MS005712.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS005712.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NDR1/HIN1-like protein 12
Location	scaffold254: 1026162 .. 1026752 (-)
Sequence length	591
RNA-Seq Expression	MS005712.1
Synteny	MS005712.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACAAAAGCAAGGCCAAATCTCTCGGCACTTGCATCTTCTTCTTCTTCATAATCATCATATTAGTCATAATCATTGCTGTTGTTGTTCCTCCGACCGTCTACCGCTTCGTCGGCCCACGGTTCACGGTCGTCGACGGTGTCATGTACGGCTTCAACATGACATCTCCTCCGCACCTCTTGTTTTCCACCGCAAACTTCACCGTCCTCGTTACGAACCCCAGTAGGCAATTTTCCTTTCACTCTGACGGGTTGACCGCCACCGTGTGGTACATGAGCAAGAATATAACGACGCCACAAGTATTGCCTCCGTTGACTTTGGGGAGGCAGAGCAGCACGGTGATGTCGCTGGTTCTCAGTGGCGAGGAGGCGGTGCCGGTGTCGTCTGAGGGGGCAGACGAGTTGGCAAGGACCGAGAAAGTTGGTGGTACTATAATAATGGTGAGTGTGCAGTTGCTTGGAACACTAAGATGGGAAGATGGGGTAATAAAAACTGATGTGGGAGTGAGATGTGATGTGCCGGTGGGTGTGAAGAGTGGCTTGCTGGGTGAACTTCACTTACTCCGTTGTTTGCCTTGTCGAGTTTATATT

mRNA sequence

CACAACAAAAGCAAGGCCAAATCTCTCGGCACTTGCATCTTCTTCTTCTTCATAATCATCATATTAGTCATAATCATTGCTGTTGTTGTTCCTCCGACCGTCTACCGCTTCGTCGGCCCACGGTTCACGGTCGTCGACGGTGTCATGTACGGCTTCAACATGACATCTCCTCCGCACCTCTTGTTTTCCACCGCAAACTTCACCGTCCTCGTTACGAACCCCAGTAGGCAATTTTCCTTTCACTCTGACGGGTTGACCGCCACCGTGTGGTACATGAGCAAGAATATAACGACGCCACAAGTATTGCCTCCGTTGACTTTGGGGAGGCAGAGCAGCACGGTGATGTCGCTGGTTCTCAGTGGCGAGGAGGCGGTGCCGGTGTCGTCTGAGGGGGCAGACGAGTTGGCAAGGACCGAGAAAGTTGGTGGTACTATAATAATGGTGAGTGTGCAGTTGCTTGGAACACTAAGATGGGAAGATGGGGTAATAAAAACTGATGTGGGAGTGAGATGTGATGTGCCGGTGGGTGTGAAGAGTGGCTTGCTGGGTGAACTTCACTTACTCCGTTGTTTGCCTTGTCGAGTTTATATT

Coding sequence (CDS)

CACAACAAAAGCAAGGCCAAATCTCTCGGCACTTGCATCTTCTTCTTCTTCATAATCATCATATTAGTCATAATCATTGCTGTTGTTGTTCCTCCGACCGTCTACCGCTTCGTCGGCCCACGGTTCACGGTCGTCGACGGTGTCATGTACGGCTTCAACATGACATCTCCTCCGCACCTCTTGTTTTCCACCGCAAACTTCACCGTCCTCGTTACGAACCCCAGTAGGCAATTTTCCTTTCACTCTGACGGGTTGACCGCCACCGTGTGGTACATGAGCAAGAATATAACGACGCCACAAGTATTGCCTCCGTTGACTTTGGGGAGGCAGAGCAGCACGGTGATGTCGCTGGTTCTCAGTGGCGAGGAGGCGGTGCCGGTGTCGTCTGAGGGGGCAGACGAGTTGGCAAGGACCGAGAAAGTTGGTGGTACTATAATAATGGTGAGTGTGCAGTTGCTTGGAACACTAAGATGGGAAGATGGGGTAATAAAAACTGATGTGGGAGTGAGATGTGATGTGCCGGTGGGTGTGAAGAGTGGCTTGCTGGGTGAACTTCACTTACTCCGTTGTTTGCCTTGTCGAGTTTATATT

Protein sequence

HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHLLFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSGLLGELHLLRCLPCRVYI

Homology

[Close]

BLAST of MS005712.1 vs. NCBI nr
Match: XP_022147143.1 (uncharacterized protein LOC111016143 [Momordica charantia])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 193/197 (97.97%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL
Sbjct: 8   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 67

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           LFSTANFTVLV NPS QFSFHSDGLTATVWYMS NITTPQVLPPLTLGRQSSTVMSLVLS
Sbjct: 68  LFSTANFTVLVMNPSGQFSFHSDGLTATVWYMSMNITTPQVLPPLTLGRQSSTVMSLVLS 127

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSG 180
           GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSG
Sbjct: 128 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSG 187

Query: 181 LLGELHLLRCLPCRVYI 198
           LLGELHLLRCL CRVYI
Sbjct: 188 LLGELHLLRCLRCRVYI 204

[Close]

BLAST of MS005712.1 vs. NCBI nr
Match: XP_022146145.1 (NDR1/HIN1-like protein 12 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-25
Identity = 85/200 (42.50%), Postives = 123/200 (61.50%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++KS  +S+  CI  F ++I +V +I  +    VYR   P+FTVV   +Y  NM+SPP L
Sbjct: 34  YSKSTHRSVCACISIFLLMIGVVALILWL----VYRPTDPQFTVVSAAIYDLNMSSPP-L 93

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LTA V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 94  LSTTMQFTIITRNPNRRVSIYYDRLTAFVSYRNQQITSQVMLPPLFHEKRSTLAMSPVLG 153

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT---DVGVRCDVPVGV 180
           G  AVP S E  + L   + +G  +I + V LLG +RW+ G++KT    V VRCDV VGV
Sbjct: 154 G-GAVPTSLEVVNGLVTDQTIG--VIGLRVALLGRIRWKAGLVKTGHYSVYVRCDVLVGV 213

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G++ LL    C+V I
Sbjct: 214 KRGLVGQVPLLGSPACKVDI 225

[Close]

BLAST of MS005712.1 vs. NCBI nr
Match: XP_008437747.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >KAA0048793.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYK20746.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 9.2e-24
Identity = 83/200 (41.50%), Postives = 122/200 (61.00%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++KS  +S+  CI  F +II +V +   +    VYR + P+FTVV   +Y  NM+S P L
Sbjct: 31  YSKSTRRSVCACISIFLLIIGVVALTLWL----VYRPIDPQFTVVGAAIYDLNMSSLP-L 90

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LT  V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 91  LSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLG 150

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTD---VGVRCDVPVGV 180
           G  AV VS E A+ L   + +G  ++ + V LLG LRW+ G +KT    V V+CDV +GV
Sbjct: 151 G-GAVAVSLEVANGLVTDQTIG--VLGLRVVLLGRLRWKAGPLKTGRYAVYVKCDVLMGV 210

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G+L +L   PC+V I
Sbjct: 211 KRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of MS005712.1 vs. NCBI nr
Match: XP_004133755.1 (NDR1/HIN1-like protein 12 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 82/200 (41.00%), Postives = 121/200 (60.50%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++K   +S+  CI  F ++I +V +   +    VYR + P+FTVV   +Y  NM+S P L
Sbjct: 31  YSKRTRRSVCACISIFLLVIGVVALTLWL----VYRPIDPQFTVVGAAIYDLNMSSLP-L 90

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LT  V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 91  LSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLG 150

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT---DVGVRCDVPVGV 180
           G  AV VS E A+ L   + +G  ++ + V LLG LRW+ G +KT    V V+CDV VGV
Sbjct: 151 G-GAVAVSLEVANGLVTDQTIG--VLGLRVVLLGRLRWKAGPLKTGRYSVYVKCDVLVGV 210

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G+L +L   PC+V I
Sbjct: 211 KRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of MS005712.1 vs. NCBI nr
Match: XP_038899063.1 (NDR1/HIN1-like protein 12 [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-22
Identity = 82/197 (41.62%), Postives = 119/197 (60.41%), Query Frame = 0


Query: 2   NKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHLL 61
           +KS  +S+  CI  F +II +V +   +    VYR + P+FTVV   +Y  NM+S P LL
Sbjct: 33  SKSTRRSVCACISIFLLIIGVVALTLWL----VYRPIHPQFTVVGAAIYDLNMSSLP-LL 92

Query: 62  FSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSG 121
            +T  FT++  NP+R+ S + D L A V Y ++ IT+  +LPPL   ++S+  MS VL G
Sbjct: 93  STTMQFTIVTRNPNRRVSIYYDRLIAFVSYRNQQITSQVMLPPLVHEKRSTVAMSPVLGG 152

Query: 122 EEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTD---VGVRCDVPVGVK 181
             AV VS E A+ L   + +G  ++ + V LLG LRW+ G +KT    V V+CDV VGVK
Sbjct: 153 -GAVAVSLEVANGLVTDQAIG--VLGLRVVLLGRLRWKAGPLKTGRYAVYVKCDVLVGVK 212

Query: 182 SGLLGELHLLRCLPCRV 196
            GL+G+L +L    C+V
Sbjct: 213 RGLVGQLPMLASPACKV 221

[Close]

BLAST of MS005712.1 vs. ExPASy Swiss-Prot
Match: Q9SRN0 (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 45/154 (29.22%), Postives = 79/154 (51.30%), Query Frame = 0


Query: 13  IFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMT-SPPHLLFSTANFTVLV 72
           IF  FII + +++I  ++ P+      PRF + D  +Y FN++ +PP+LL S    T+  
Sbjct: 23  IFVLFIIFLTILLIWAILQPS-----KPRFILQDATVYAFNVSGNPPNLLTSNFQITLSS 82

Query: 73  TNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVPVSSEG 132
            NP+ +   + D L     Y S+ IT P  +PP   G +   + S  + G  +VP++   
Sbjct: 83  RNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYG-TSVPIAPFN 142

Query: 133 ADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT 166
              L  T+K  G ++++ ++  G +RW+ G   T
Sbjct: 143 GVSL-DTDKDNGVVLLI-IRADGRVRWKVGTFIT 168

[Close]

BLAST of MS005712.1 vs. ExPASy Swiss-Prot
Match: Q9SJ54 (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-07
Identity = 46/177 (25.99%), Postives = 80/177 (45.20%), Query Frame = 0


Query: 10  GTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHLLFSTANFTV 69
           G  I F  I++I + ++ +++ PT      PRF + D  +Y FN+ S P+LL S    T+
Sbjct: 23  GVIIGFIIIVLITIFLVWIILQPT-----KPRFILQDATVYAFNL-SQPNLLTSNFQITI 82

Query: 70  LVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVPVSS 129
              N + +   + D L     Y ++ IT    +PP   G +   V S  + G  +VP++ 
Sbjct: 83  ASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYG-NSVPIAP 142

Query: 130 EGADELARTEKVGGTIIMVSVQLLGTLRWEDGVI---KTDVGVRCDVPVGVKSGLLG 184
             A  L   +  G   +++     G +RW+ G +   K  + VRC   + +     G
Sbjct: 143 FNAVALGDEQNRGFVTLIIRAD--GRVRWKVGTLITGKYHLHVRCQAFINLADKAAG 190

[Close]

BLAST of MS005712.1 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.5e-05
Identity = 42/168 (25.00%), Postives = 80/168 (47.62%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFI-IIILVIIIAVVVPPTVYRFVGPR---FTVVDGVMYGFNMTS 60
           + +   +  G C+   F+ +II +I+I  V     +  V PR   F V D  +  F+ TS
Sbjct: 25  YRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS 84

Query: 61  PPHLLFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMS 120
           P ++L      TV V NP+++   + D + A  +Y  K  +T   L P   G +++TV++
Sbjct: 85  PDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFST-ITLTPFYQGHKNTTVLT 144

Query: 121 LVLSGEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIK 165
               G+  V + + G       E++ G +  + ++    +R++ G +K
Sbjct: 145 PTFQGQNLV-IFNAGQSRTLNAERISG-VYNIEIKFRLRVRFKLGDLK 189

[Close]

BLAST of MS005712.1 vs. ExPASy TrEMBL
Match: A0A6J1D0H0 (uncharacterized protein LOC111016143 OS=Momordica charantia OX=3673 GN=LOC111016143 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 193/197 (97.97%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL
Sbjct: 8   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 67

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           LFSTANFTVLV NPS QFSFHSDGLTATVWYMS NITTPQVLPPLTLGRQSSTVMSLVLS
Sbjct: 68  LFSTANFTVLVMNPSGQFSFHSDGLTATVWYMSMNITTPQVLPPLTLGRQSSTVMSLVLS 127

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSG 180
           GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSG
Sbjct: 128 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTDVGVRCDVPVGVKSG 187

Query: 181 LLGELHLLRCLPCRVYI 198
           LLGELHLLRCL CRVYI
Sbjct: 188 LLGELHLLRCLRCRVYI 204

[Close]

BLAST of MS005712.1 vs. ExPASy TrEMBL
Match: A0A6J1CWG5 (NDR1/HIN1-like protein 12 OS=Momordica charantia OX=3673 GN=LOC111015429 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 85/200 (42.50%), Postives = 123/200 (61.50%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++KS  +S+  CI  F ++I +V +I  +    VYR   P+FTVV   +Y  NM+SPP L
Sbjct: 34  YSKSTHRSVCACISIFLLMIGVVALILWL----VYRPTDPQFTVVSAAIYDLNMSSPP-L 93

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LTA V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 94  LSTTMQFTIITRNPNRRVSIYYDRLTAFVSYRNQQITSQVMLPPLFHEKRSTLAMSPVLG 153

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT---DVGVRCDVPVGV 180
           G  AVP S E  + L   + +G  +I + V LLG +RW+ G++KT    V VRCDV VGV
Sbjct: 154 G-GAVPTSLEVVNGLVTDQTIG--VIGLRVALLGRIRWKAGLVKTGHYSVYVRCDVLVGV 213

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G++ LL    C+V I
Sbjct: 214 KRGLVGQVPLLGSPACKVDI 225

[Close]

BLAST of MS005712.1 vs. ExPASy TrEMBL
Match: A0A5D3DAX9 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00030 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 83/200 (41.50%), Postives = 122/200 (61.00%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++KS  +S+  CI  F +II +V +   +    VYR + P+FTVV   +Y  NM+S P L
Sbjct: 31  YSKSTRRSVCACISIFLLIIGVVALTLWL----VYRPIDPQFTVVGAAIYDLNMSSLP-L 90

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LT  V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 91  LSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLG 150

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTD---VGVRCDVPVGV 180
           G  AV VS E A+ L   + +G  ++ + V LLG LRW+ G +KT    V V+CDV +GV
Sbjct: 151 G-GAVAVSLEVANGLVTDQTIG--VLGLRVVLLGRLRWKAGPLKTGRYAVYVKCDVLMGV 210

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G+L +L   PC+V I
Sbjct: 211 KRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of MS005712.1 vs. ExPASy TrEMBL
Match: A0A1S3AVC7 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483090 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 83/200 (41.50%), Postives = 122/200 (61.00%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++KS  +S+  CI  F +II +V +   +    VYR + P+FTVV   +Y  NM+S P L
Sbjct: 31  YSKSTRRSVCACISIFLLIIGVVALTLWL----VYRPIDPQFTVVGAAIYDLNMSSLP-L 90

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LT  V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 91  LSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLG 150

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKTD---VGVRCDVPVGV 180
           G  AV VS E A+ L   + +G  ++ + V LLG LRW+ G +KT    V V+CDV +GV
Sbjct: 151 G-GAVAVSLEVANGLVTDQTIG--VLGLRVVLLGRLRWKAGPLKTGRYAVYVKCDVLMGV 210

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G+L +L   PC+V I
Sbjct: 211 KRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of MS005712.1 vs. ExPASy TrEMBL
Match: A0A0A0L882 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.8e-24
Identity = 82/200 (41.00%), Postives = 121/200 (60.50%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHL 60
           ++K   +S+  CI  F ++I +V +   +    VYR + P+FTVV   +Y  NM+S P L
Sbjct: 31  YSKRTRRSVCACISIFLLVIGVVALTLWL----VYRPIDPQFTVVGAAIYDLNMSSLP-L 90

Query: 61  LFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLS 120
           L +T  FT++  NP+R+ S + D LT  V Y ++ IT+  +LPPL   ++S+  MS VL 
Sbjct: 91  LSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLG 150

Query: 121 GEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT---DVGVRCDVPVGV 180
           G  AV VS E A+ L   + +G  ++ + V LLG LRW+ G +KT    V V+CDV VGV
Sbjct: 151 G-GAVAVSLEVANGLVTDQTIG--VLGLRVVLLGRLRWKAGPLKTGRYSVYVKCDVLVGV 210

Query: 181 KSGLLGELHLLRCLPCRVYI 198
           K GL+G+L +L   PC+V I
Sbjct: 211 KRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of MS005712.1 vs. TAIR 10
Match: AT4G01410.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-20
Identity = 72/187 (38.50%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 12  CIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHLLFSTANFTVLV 71
           C   F I++IL II  ++    VYR   PR TVV   +Y  N T+PP L+ ++  F+VL 
Sbjct: 45  CGAIFTILVILGIIALILW--LVYRPHKPRLTVVGAAIYDLNFTAPP-LISTSVQFSVLA 104

Query: 72  TNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVPVSSEG 131
            NP+R+ S H D L+  V Y  + IT P  LPPL LG +S+ V++ V+ G   +PVS E 
Sbjct: 105 RNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAPVMGG-NGIPVSPEV 164

Query: 132 ADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT---DVGVRCDVPVGVKSGLLGELHLL 191
           A+ L   E  G  ++++ V + G LRW+ G IKT       RCDV +       G++ LL
Sbjct: 165 ANGLKNDEAYG--VVLMRVVIFGRLRWKAGAIKTGRYGFYARCDVWLRFNPSSNGQVPLL 224

Query: 192 RCLPCRV 196
               C+V
Sbjct: 225 APSTCKV 225

[Close]

BLAST of MS005712.1 vs. TAIR 10
Match: AT3G52470.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-10
Identity = 51/182 (28.02%), Postives = 84/182 (46.15%), Query Frame = 0


Query: 7   KSLGTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHLLFSTAN 66
           K     I F  I++I + ++ V++ PT      PRF + D  +Y FN+ S P+LL S   
Sbjct: 18  KLCAAIIAFIVIVLITIFLVWVILRPT-----KPRFVLQDATVYAFNL-SQPNLLTSNFQ 77

Query: 67  FTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVP 126
            T+   NP+ +   + D L     YM++ IT    +PP   G +   V S  + G  AVP
Sbjct: 78  VTIASRNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYG-TAVP 137

Query: 127 VSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVI---KTDVGVRCDVPVGVKSGLLG 186
           ++   +  L   +  G   +M+     GT+RW+   +   K  + VRC   + + +   G
Sbjct: 138 IAPYNSVALGEEKDRGFVGLMIRAD--GTVRWKVRTLITGKYHIHVRCQAFINLGNKAAG 190

[Close]

BLAST of MS005712.1 vs. TAIR 10
Match: AT3G11660.1 (NDR1/HIN1-like 1 )

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 45/154 (29.22%), Postives = 79/154 (51.30%), Query Frame = 0


Query: 13  IFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMT-SPPHLLFSTANFTVLV 72
           IF  FII + +++I  ++ P+      PRF + D  +Y FN++ +PP+LL S    T+  
Sbjct: 23  IFVLFIIFLTILLIWAILQPS-----KPRFILQDATVYAFNVSGNPPNLLTSNFQITLSS 82

Query: 73  TNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVPVSSEG 132
            NP+ +   + D L     Y S+ IT P  +PP   G +   + S  + G  +VP++   
Sbjct: 83  RNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYG-TSVPIAPFN 142

Query: 133 ADELARTEKVGGTIIMVSVQLLGTLRWEDGVIKT 166
              L  T+K  G ++++ ++  G +RW+ G   T
Sbjct: 143 GVSL-DTDKDNGVVLLI-IRADGRVRWKVGTFIT 168

[Close]

BLAST of MS005712.1 vs. TAIR 10
Match: AT2G35960.1 (NDR1/HIN1-like 12 )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 46/177 (25.99%), Postives = 80/177 (45.20%), Query Frame = 0


Query: 10  GTCIFFFFIIIILVIIIAVVVPPTVYRFVGPRFTVVDGVMYGFNMTSPPHLLFSTANFTV 69
           G  I F  I++I + ++ +++ PT      PRF + D  +Y FN+ S P+LL S    T+
Sbjct: 23  GVIIGFIIIVLITIFLVWIILQPT-----KPRFILQDATVYAFNL-SQPNLLTSNFQITI 82

Query: 70  LVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMSLVLSGEEAVPVSS 129
              N + +   + D L     Y ++ IT    +PP   G +   V S  + G  +VP++ 
Sbjct: 83  ASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYG-NSVPIAP 142

Query: 130 EGADELARTEKVGGTIIMVSVQLLGTLRWEDGVI---KTDVGVRCDVPVGVKSGLLG 184
             A  L   +  G   +++     G +RW+ G +   K  + VRC   + +     G
Sbjct: 143 FNAVALGDEQNRGFVTLIIRAD--GRVRWKVGTLITGKYHLHVRCQAFINLADKAAG 190

[Close]

BLAST of MS005712.1 vs. TAIR 10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 49.7 bits (117), Expect = 3.2e-06
Identity = 42/168 (25.00%), Postives = 80/168 (47.62%), Query Frame = 0


Query: 1   HNKSKAKSLGTCIFFFFI-IIILVIIIAVVVPPTVYRFVGPR---FTVVDGVMYGFNMTS 60
           + +   +  G C+   F+ +II +I+I  V     +  V PR   F V D  +  F+ TS
Sbjct: 25  YRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS 84

Query: 61  PPHLLFSTANFTVLVTNPSRQFSFHSDGLTATVWYMSKNITTPQVLPPLTLGRQSSTVMS 120
           P ++L      TV V NP+++   + D + A  +Y  K  +T   L P   G +++TV++
Sbjct: 85  PDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFST-ITLTPFYQGHKNTTVLT 144

Query: 121 LVLSGEEAVPVSSEGADELARTEKVGGTIIMVSVQLLGTLRWEDGVIK 165
               G+  V + + G       E++ G +  + ++    +R++ G +K
Sbjct: 145 PTFQGQNLV-IFNAGQSRTLNAERISG-VYNIEIKFRLRVRFKLGDLK 189

The following BLAST results are available for this feature:

BLAST of MS005712.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147143.1	2.7e-100	97.97	uncharacterized protein LOC111016143 [Momordica charantia]	[more]
XP_022146145.1	3.7e-25	42.50	NDR1/HIN1-like protein 12 [Momordica charantia]	[more]
XP_008437747.1	9.2e-24	41.50	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >KAA0048793.1 NDR1/HIN1-like...	[more]
XP_004133755.1	1.2e-23	41.00	NDR1/HIN1-like protein 12 [Cucumis sativus]	[more]
XP_038899063.1	2.3e-22	41.62	NDR1/HIN1-like protein 12 [Benincasa hispida]	[more]

BLAST of MS005712.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN0	2.5e-08	29.22	NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1	[more]
Q9SJ54	2.8e-07	25.99	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]
Q9SJ52	4.5e-05	25.00	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]

BLAST of MS005712.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0H0	1.3e-100	97.97	uncharacterized protein LOC111016143 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1CWG5	1.8e-25	42.50	NDR1/HIN1-like protein 12 OS=Momordica charantia OX=3673 GN=LOC111015429 PE=4 SV...	[more]
A0A5D3DAX9	4.5e-24	41.50	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AVC7	4.5e-24	41.50	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483090 PE=4 SV=1	[more]
A0A0A0L882	5.8e-24	41.00	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116630 PE=4 ...	[more]

BLAST of MS005712.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01410.1	1.0e-20	38.50	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G52470.1	6.2e-10	28.02	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G11660.1	1.8e-09	29.22	NDR1/HIN1-like 1	[more]
AT2G35960.1	2.0e-08	25.99	NDR1/HIN1-like 12	[more]
AT2G35980.1	3.2e-06	25.00	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 68..143 e-value: 1.7E-7 score: 31.7
None	No IPR available	PANTHER	PTHR31415:SF62	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 11..194
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 11..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS005712	MS005712	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS005712.1-cds	MS005712.1-cds-scaffold254:1026162..1026752	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS005712.1	MS005712.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism