MS004843.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS004843.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Wound-responsive family protein
Location	scaffold176: 917948 .. 918187 (-)
Sequence length	240
RNA-Seq Expression	MS004843.1
Synteny	MS004843.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTATCTTGGTCGGGTGTGGATGGCGGCGAGTGTAGCCGTAGTTCAGGGCCAAACGGACGGCCGGTACAGGTCGACGAATGGAGCCGTTTCTCTCCGGCAAAACCTTAGGGTTTTCTCTGGGGAAAGCACGGCGGATCTCCGCCCAATATCAACCGCGACGATTAATTCGGACGAGCAGAAGCAAGCCGATGAGTCTCTTCGCCGAGTTATGTACTTGAACTGCTGGGGGCAGGGC

mRNA sequence

ATGAGTTATCTTGGTCGGGTGTGGATGGCGGCGAGTGTAGCCGTAGTTCAGGGCCAAACGGACGGCCGGTACAGGTCGACGAATGGAGCCGTTTCTCTCCGGCAAAACCTTAGGGTTTTCTCTGGGGAAAGCACGGCGGATCTCCGCCCAATATCAACCGCGACGATTAATTCGGACGAGCAGAAGCAAGCCGATGAGTCTCTTCGCCGAGTTATGTACTTGAACTGCTGGGGGCAGGGC

Coding sequence (CDS)

ATGAGTTATCTTGGTCGGGTGTGGATGGCGGCGAGTGTAGCCGTAGTTCAGGGCCAAACGGACGGCCGGTACAGGTCGACGAATGGAGCCGTTTCTCTCCGGCAAAACCTTAGGGTTTTCTCTGGGGAAAGCACGGCGGATCTCCGCCCAATATCAACCGCGACGATTAATTCGGACGAGCAGAAGCAAGCCGATGAGTCTCTTCGCCGAGTTATGTACTTGAACTGCTGGGGGCAGGGC

Protein sequence

MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQNLRVFSGESTADLRPISTATINSDEQKQADESLRRVMYLNCWGQG

Homology

[Close]

BLAST of MS004843.1 vs. NCBI nr
Match: KAG6604822.1 (Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1   MSYLGRVWMAASVAVVQ-GQTDGRYRSTNGAVSLRQNLRVFSGESTA---DLRPISTATI 60
           MSYLGRVWMAASVAVV  GQ+DGR+ S  G ++L +N      E+TA   DLR  STAT 
Sbjct: 279 MSYLGRVWMAASVAVVHGGQSDGRHGSAEGILTLHRN-----AETTAVAVDLRQFSTATS 338

Query: 61  NS----DEQKQADESLRRVMYLNCWGQG 81
           +S    DE+ QADESLRRVMY NCWGQG
Sbjct: 339 HSNRDGDEKGQADESLRRVMYFNCWGQG 361

[Close]

BLAST of MS004843.1 vs. NCBI nr
Match: KAG7034937.1 (hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQ-GQTDGRYRSTNGAVSLRQNLRVFSGESTA---DLRPISTATI 60
          MSYLGRVWMAASVAVV  GQ+DGR+ S  G ++L +N      E+TA   DLR  STAT 
Sbjct: 1  MSYLGRVWMAASVAVVHGGQSDGRHGSAEGILTLHRN-----AETTAVAVDLRQFSTATS 60

Query: 61 NS----DEQKQADESLRRVMYLNCWGQG 81
          +S    DE+ QADESLRRVMY NCWGQG
Sbjct: 61 HSNRDGDEKGQADESLRRVMYFNCWGQG 83

[Close]

BLAST of MS004843.1 vs. NCBI nr
Match: KAE8075854.1 (hypothetical protein FH972_014541 [Carpinus fangiana])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQNLR-VFSGESTADLRPIS------- 60
          MSYL R+WMAASVAVVQG TD   +   G  SL+   R  FSG  +ADLRPIS       
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 ---TATINSDEQ-KQADESLRRVMYLNCWGQG 81
               + ++DE+ +QA+ESLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of MS004843.1 vs. NCBI nr
Match: KAB1209973.1 (hypothetical protein CJ030_MR6G020117 [Morella rubra])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQNLR-VFSGESTADLRPIS------- 60
          MSY+ RVWMAASVAVVQG  D   +  +G  SL+   R  FSG  ++D+RP+S       
Sbjct: 1  MSYINRVWMAASVAVVQGHRDQGCKLKSGVDSLQHGRRKFFSGNDSSDIRPLSGMMGSDL 60

Query: 61 ---TATINSDE-QKQADESLRRVMYLNCWGQG 81
                 +SDE ++QADESLRRVMYLNCWGQG
Sbjct: 61 DGFLGNTDSDERRRQADESLRRVMYLNCWGQG 92

[Close]

BLAST of MS004843.1 vs. NCBI nr
Match: KAA0047914.1 (wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 54/90 (60.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MSYLG---RVWMAASVAVVQ-GQTD-GRYRSTNGAVSLRQNLRVFSGESTA-DLRPISTA 60
          MSYLG   R+WM ASVAVVQ GQ+D G + +T G VSL Q LRV S E+TA +LRPIS+A
Sbjct: 1  MSYLGLGRRMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60

Query: 61 TINSDE----QKQADESLRRVMYLNCWGQG 81
               E    +   +ESLRRVMYLNCWGQG
Sbjct: 61 WNQEGEDIKREANGEESLRRVMYLNCWGQG 90

[Close]

BLAST of MS004843.1 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.5e-14
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQNLR-VFSGESTADLRPIS------- 60
          MSYL R+WMAASVAVVQG TD   +   G  SL+   R  FSG  +ADLRPIS       
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 ---TATINSDEQ-KQADESLRRVMYLNCWGQG 81
               + ++DE+ +QA+ESLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of MS004843.1 vs. ExPASy TrEMBL
Match: A0A2N9HZV9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.4e-14
Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLR-QNLRVFSGESTADLRPISTATINSD 60
          MSYL RVWMAA VAVVQG+TD  ++  +G  S++ +  ++FSG  T+DLRP+S   I SD
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLS-GMIGSD 60

Query: 61 EQ------------KQADESLRRVMYLNCWGQG 81
           Q              ADESLRRVMYLNCWGQG
Sbjct: 61 FQGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

[Close]

BLAST of MS004843.1 vs. ExPASy TrEMBL
Match: A0A6A1VB48 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQNLR-VFSGESTADLRPIS------- 60
          MSY+ RVWMAASVAVVQG  D   +  +G  SL+   R  FSG  ++D+RP+S       
Sbjct: 1  MSYINRVWMAASVAVVQGHRDQGCKLKSGVDSLQHGRRKFFSGNDSSDIRPLSGMMGSDL 60

Query: 61 ---TATINSDE-QKQADESLRRVMYLNCWGQG 81
                 +SDE ++QADESLRRVMYLNCWGQG
Sbjct: 61 DGFLGNTDSDERRRQADESLRRVMYLNCWGQG 92

[Close]

BLAST of MS004843.1 vs. ExPASy TrEMBL
Match: A0A5A7TY19 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001960 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 54/90 (60.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MSYLG---RVWMAASVAVVQ-GQTD-GRYRSTNGAVSLRQNLRVFSGESTA-DLRPISTA 60
          MSYLG   R+WM ASVAVVQ GQ+D G + +T G VSL Q LRV S E+TA +LRPIS+A
Sbjct: 1  MSYLGLGRRMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60

Query: 61 TINSDE----QKQADESLRRVMYLNCWGQG 81
               E    +   +ESLRRVMYLNCWGQG
Sbjct: 61 WNQEGEDIKREANGEESLRRVMYLNCWGQG 90

[Close]

BLAST of MS004843.1 vs. ExPASy TrEMBL
Match: A0A5C7HEP4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020504 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQ-NLRVFSGESTADLRPISTATINSD 60
          M YL RVWMAASVAVVQG TD  Y+  +G   L     R+FS + ++DLRP+S   I SD
Sbjct: 1  MWYLNRVWMAASVAVVQGHTDQGYKMKSGLAYLHHGKKRLFSSKDSSDLRPLS-GMIGSD 60

Query: 61 -------EQKQADESLRRVMYLNCWGQG 81
                  + Q DESLRRVMYLNCWGQG
Sbjct: 61 ISGVIGSHETQDDESLRRVMYLNCWGQG 87

[Close]

BLAST of MS004843.1 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 38/90 (42.22%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 1  MSYLGRVWMAASVAVVQGQTDGRYRSTNGAVSLRQNLRVFSGESTADLRPISTATINSD- 60
          MSYL +VWMAAS   VQG  D   +  +G  S  +  R  S    +DLRP++ A +  D 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLS----SDLRPLAAADLTGDS 60

Query: 61 ---------EQKQADESLRRVMYLNCWGQG 81
                        DESLR+VMYLNCW QG
Sbjct: 61 LPSEERRRTSSSTPDESLRQVMYLNCWAQG 86

[Close]

BLAST of MS004843.1 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 1  MSYLGRVWM-AASVAVVQGQTD------GRYRSTNGAVSLRQNLRVFSGESTADLRPIST 60
          MS   + WM AAS+  V+   D        Y   +    LR NLR     S +  + +S+
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLR-----SVSQAKKLSS 60

Query: 61 ATIN-SDEQKQADESLRRVMYLNCWG 79
          ++I+ +++ KQA+ESLR VMYL+CWG
Sbjct: 61 SSIDYTNKTKQAEESLRTVMYLSCWG 81

[Close]

BLAST of MS004843.1 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 1  MSYLGRVW-MAASVAVVQGQTD--GRYRSTNGAVSLRQNLR-----VFSGE--STADLRP 60
          MS   + W +A S+  V+   D  G  R      S+ Q+LR     V  G+  S++ +  
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 ISTATINSDEQKQADESLRRVMYLNCWG 79
            T++  S++ K+A+ESLR VMYL+CWG
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWG 88

The following BLAST results are available for this feature:

BLAST of MS004843.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604822.1	2.4e-15	62.50	Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034937.1	2.4e-15	62.50	hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8075854.1	1.3e-13	55.43	hypothetical protein FH972_014541 [Carpinus fangiana]	[more]
KAB1209973.1	2.3e-13	53.26	hypothetical protein CJ030_MR6G020117 [Morella rubra]	[more]
KAA0047914.1	2.3e-13	60.00	wound-responsive family protein [Cucumis melo var. makuwa]	[more]

BLAST of MS004843.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004843.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6RB28	6.5e-14	55.43	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1	[more]
A0A2N9HZV9	8.4e-14	53.76	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1	[more]
A0A6A1VB48	1.1e-13	53.26	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1	[more]
A0A5A7TY19	1.1e-13	60.00	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5C7HEP4	1.4e-13	55.68	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020504 PE=4 SV=1	[more]

BLAST of MS004843.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	1.7e-11	42.22	Wound-responsive family protein	[more]
AT4G10265.1	1.4e-05	37.21	Wound-responsive family protein	[more]
AT4G10270.1	6.0e-04	35.23	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..79 e-value: 6.8E-13 score: 49.4
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..80
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS004843	MS004843	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS004843.1-cds	MS004843.1-cds-scaffold176:917948..918187	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS004843.1	MS004843.1-protein	polypeptide