MS004840.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS004840.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	scaffold176: 909681 .. 910913 (+)
Sequence length	1233
RNA-Seq Expression	MS004840.1
Synteny	MS004840.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTTTCTTACACAAAGCAATTAACCTTTTATGTGAACCATGGCAACCACGAGCAGGCTCTTGCTCTTTTCCACCACATGCAGGCCTCGCTCGCCCTTGGTTTAGACGCCCACGTCTTCTCTCTCACTCTTAAGTCCTGCACCGCCATCCAACGACCCCATTTGGGCATTGCCATTCACGCCCATGCCGCTAAGTCCTCCCTGCTCTCAAGCCCATTTGTTGCTTCTGCGCTAGTTGACATGTACGGTAAATGCATCTCGGTTTCACTCGCACGAAAGCTGTTCGATGAAATCCCCCAGAGAAGTGTCGTCGTGTGGAATGCCATTTTATCACTATACGCGCACGCAAATATGTTATCTGATGCTTTGCGGTTGTTTGAAGCTATGGATGTGCAACCAAATACTTCGTCTTTCAATTCAATTATAGCCGGGTTGTCGGAATTGGAAGATGGATTCAAGGCCATTGCTTTCTACCGAAAAATGCAACAATTTGGGTTGAAGCCTAATCTAATTACCCTTCTTGCTTTATTGCCTGCATGTGTTGGAGTGGCCGCTTTGGACTTGATCAAACAAATTCACGGTTTTGCTATGAGAAGTGACATCAGTAGTCATCTCCAGTTAGGCAGTGGCCTTGTTGAGGCATATGGACGATGCGGATGTCTCTCTTATGCACACAACGTGTTTGATAGTATGAAGGAAAGAGATGTAGTAGCATGGAGCAGTTTGATATCAGCACATGCTCTTCATGGGGAGGCCAGAACTGCTTTAAACATTTTTCAACAGATGGAGTTGGCTGAAGTACATCCTGACGAGATTACGTTCATTGGGGTGTTGAAAGCTTGCAGTCACGTGGGGTTAGCTGATAAAGCTTTGGATTATTTTAGTCGTATGCAGAGAGATTATGGTCTAAAAGCGAGCAGCGATCATTATTCTTGTCTAGTAGATGTATTGGGCAGAGCTGGGAGATTGCACGAGGCATTTGACATCATTCGTGAGATGCCGGTGAGGGTGACGGCTAAAGCTTGGGGCGCCCTTCTTGGGGCTTGTCGAATTTATGGAGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGAGATAGAGCCTGAGAATGCTGCCAATTATGTCCTGTTGGCTAAAATGTATGCGAGTGTAGGGAGGCATGAGGAGGCTCAAAGAATGAGAAGAGAAATGAAAGAGAGGAGAGTTAAGGTAGTACCTGGTAGCAGT

mRNA sequence

TTGCTTTCTTACACAAAGCAATTAACCTTTTATGTGAACCATGGCAACCACGAGCAGGCTCTTGCTCTTTTCCACCACATGCAGGCCTCGCTCGCCCTTGGTTTAGACGCCCACGTCTTCTCTCTCACTCTTAAGTCCTGCACCGCCATCCAACGACCCCATTTGGGCATTGCCATTCACGCCCATGCCGCTAAGTCCTCCCTGCTCTCAAGCCCATTTGTTGCTTCTGCGCTAGTTGACATGTACGGTAAATGCATCTCGGTTTCACTCGCACGAAAGCTGTTCGATGAAATCCCCCAGAGAAGTGTCGTCGTGTGGAATGCCATTTTATCACTATACGCGCACGCAAATATGTTATCTGATGCTTTGCGGTTGTTTGAAGCTATGGATGTGCAACCAAATACTTCGTCTTTCAATTCAATTATAGCCGGGTTGTCGGAATTGGAAGATGGATTCAAGGCCATTGCTTTCTACCGAAAAATGCAACAATTTGGGTTGAAGCCTAATCTAATTACCCTTCTTGCTTTATTGCCTGCATGTGTTGGAGTGGCCGCTTTGGACTTGATCAAACAAATTCACGGTTTTGCTATGAGAAGTGACATCAGTAGTCATCTCCAGTTAGGCAGTGGCCTTGTTGAGGCATATGGACGATGCGGATGTCTCTCTTATGCACACAACGTGTTTGATAGTATGAAGGAAAGAGATGTAGTAGCATGGAGCAGTTTGATATCAGCACATGCTCTTCATGGGGAGGCCAGAACTGCTTTAAACATTTTTCAACAGATGGAGTTGGCTGAAGTACATCCTGACGAGATTACGTTCATTGGGGTGTTGAAAGCTTGCAGTCACGTGGGGTTAGCTGATAAAGCTTTGGATTATTTTAGTCGTATGCAGAGAGATTATGGTCTAAAAGCGAGCAGCGATCATTATTCTTGTCTAGTAGATGTATTGGGCAGAGCTGGGAGATTGCACGAGGCATTTGACATCATTCGTGAGATGCCGGTGAGGGTGACGGCTAAAGCTTGGGGCGCCCTTCTTGGGGCTTGTCGAATTTATGGAGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGAGATAGAGCCTGAGAATGCTGCCAATTATGTCCTGTTGGCTAAAATGTATGCGAGTGTAGGGAGGCATGAGGAGGCTCAAAGAATGAGAAGAGAAATGAAAGAGAGGAGAGTTAAGGTAGTACCTGGTAGCAGT

Coding sequence (CDS)

TTGCTTTCTTACACAAAGCAATTAACCTTTTATGTGAACCATGGCAACCACGAGCAGGCTCTTGCTCTTTTCCACCACATGCAGGCCTCGCTCGCCCTTGGTTTAGACGCCCACGTCTTCTCTCTCACTCTTAAGTCCTGCACCGCCATCCAACGACCCCATTTGGGCATTGCCATTCACGCCCATGCCGCTAAGTCCTCCCTGCTCTCAAGCCCATTTGTTGCTTCTGCGCTAGTTGACATGTACGGTAAATGCATCTCGGTTTCACTCGCACGAAAGCTGTTCGATGAAATCCCCCAGAGAAGTGTCGTCGTGTGGAATGCCATTTTATCACTATACGCGCACGCAAATATGTTATCTGATGCTTTGCGGTTGTTTGAAGCTATGGATGTGCAACCAAATACTTCGTCTTTCAATTCAATTATAGCCGGGTTGTCGGAATTGGAAGATGGATTCAAGGCCATTGCTTTCTACCGAAAAATGCAACAATTTGGGTTGAAGCCTAATCTAATTACCCTTCTTGCTTTATTGCCTGCATGTGTTGGAGTGGCCGCTTTGGACTTGATCAAACAAATTCACGGTTTTGCTATGAGAAGTGACATCAGTAGTCATCTCCAGTTAGGCAGTGGCCTTGTTGAGGCATATGGACGATGCGGATGTCTCTCTTATGCACACAACGTGTTTGATAGTATGAAGGAAAGAGATGTAGTAGCATGGAGCAGTTTGATATCAGCACATGCTCTTCATGGGGAGGCCAGAACTGCTTTAAACATTTTTCAACAGATGGAGTTGGCTGAAGTACATCCTGACGAGATTACGTTCATTGGGGTGTTGAAAGCTTGCAGTCACGTGGGGTTAGCTGATAAAGCTTTGGATTATTTTAGTCGTATGCAGAGAGATTATGGTCTAAAAGCGAGCAGCGATCATTATTCTTGTCTAGTAGATGTATTGGGCAGAGCTGGGAGATTGCACGAGGCATTTGACATCATTCGTGAGATGCCGGTGAGGGTGACGGCTAAAGCTTGGGGCGCCCTTCTTGGGGCTTGTCGAATTTATGGAGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGAGATAGAGCCTGAGAATGCTGCCAATTATGTCCTGTTGGCTAAAATGTATGCGAGTGTAGGGAGGCATGAGGAGGCTCAAAGAATGAGAAGAGAAATGAAAGAGAGGAGAGTTAAGGTAGTACCTGGTAGCAGT

Protein sequence

LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLSDALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS

Homology

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BLAST of MS004840.1 vs. NCBI nr
Match: XP_022140575.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Momordica charantia])

HSP 1 Score: 801.6 bits (2069), Expect = 3.2e-228
Identity = 408/411 (99.27%), Postives = 410/411 (99.76%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH
Sbjct: 11  LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 70

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS
Sbjct: 71  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 130

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
           DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLI+LLALLPAC
Sbjct: 131 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLISLLALLPAC 190

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS
Sbjct: 191 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 250

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD
Sbjct: 251 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 310

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVR TAKAWGALLGACRIYGELELAEI
Sbjct: 311 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRATAKAWGALLGACRIYGELELAEI 370

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKM+ASVGRHEEAQRMRREMKERRVKVVPGSS
Sbjct: 371 AGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMKERRVKVVPGSS 421

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BLAST of MS004840.1 vs. NCBI nr
Match: XP_031743918.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >XP_031743919.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >XP_031743920.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >XP_031743921.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >KGN46687.1 hypothetical protein Csa_020798 [Cucumis sativus])

HSP 1 Score: 727.6 bits (1877), Expect = 5.9e-206
Identity = 366/411 (89.05%), Postives = 389/411 (94.65%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQL+FY NHGNHEQ L+LFHHMQASLALGLDAHVFSL LKSCTA++RPHLGIAIH
Sbjct: 8   LLSYTKQLSFYANHGNHEQTLSLFHHMQASLALGLDAHVFSLVLKSCTALRRPHLGIAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+AKSSLLSSPFVA ALVDMYGK +SV+LARKLFDEIP RSVVVWN +LSLY HANML 
Sbjct: 68  AHSAKSSLLSSPFVACALVDMYGKSLSVTLARKLFDEIPHRSVVVWNVMLSLYVHANMLF 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
            AL+LFEAMDV PN SSFN+I+AGLS+LEDGFKAIAFYR+MQQ GLKPNLITLLALLPA 
Sbjct: 128 GALQLFEAMDVPPNASSFNAIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVA+LDLIKQIHGFAMR+DI +HLQL SGLVEAYGRCGCLSYAHNVFD+M ERDVVAWS
Sbjct: 188 VGVASLDLIKQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYAHNVFDNMTERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEA TALNIFQQME  +V PDEITFIGVLKACSHVGLA++ALDYF+RMQRD
Sbjct: 248 SLISAHALHGEASTALNIFQQMESCKVQPDEITFIGVLKACSHVGLANEALDYFNRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVDVL RAGRLHEA+DIIREMPVRVTAKAWGALLGACRIYGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDVLSRAGRLHEAYDIIREMPVRVTAKAWGALLGACRIYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS
Sbjct: 368 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 418

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BLAST of MS004840.1 vs. NCBI nr
Match: XP_008448216.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis melo] >XP_016900559.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis melo] >XP_016900560.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis melo] >XP_016900561.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis melo] >XP_016900562.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis melo] >XP_016900563.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis melo])

HSP 1 Score: 718.0 bits (1852), Expect = 4.6e-203
Identity = 362/411 (88.08%), Postives = 385/411 (93.67%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           L+SY+KQL+FY  HG+HEQ L+LFHHMQASLAL LDAHVFSL LKSCTA++RPHLGIAIH
Sbjct: 8   LVSYSKQLSFYAKHGSHEQTLSLFHHMQASLALALDAHVFSLVLKSCTALRRPHLGIAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+AKSSLLSSPFVA ALVDMYGK +SVSLARKLFDEIP RSVVVWN +LSLY H+NML 
Sbjct: 68  AHSAKSSLLSSPFVACALVDMYGKSLSVSLARKLFDEIPHRSVVVWNVMLSLYVHSNMLF 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
            AL+LFEAMDV PN SSFN I+AGLS+LEDGFKAIAFYR+MQQ GLKPNLITLLALLPA 
Sbjct: 128 GALQLFEAMDVPPNASSFNPIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVA+LDLIKQIHGFAMR+DI  HLQL SGLVEAYGRCGCLSYAHNVFD+M ERDVVAWS
Sbjct: 188 VGVASLDLIKQIHGFAMRNDIGGHLQLSSGLVEAYGRCGCLSYAHNVFDNMTERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEA TALNIFQQMEL++V PD ITFIGVLKACSHVGLAD+ALDYF+RMQRD
Sbjct: 248 SLISAHALHGEASTALNIFQQMELSKVQPDAITFIGVLKACSHVGLADEALDYFNRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVDVL RAGRLHEA DIIREMPVRVTAKAWGALLGACRIYGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDVLSRAGRLHEAHDIIREMPVRVTAKAWGALLGACRIYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS
Sbjct: 368 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 418

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BLAST of MS004840.1 vs. NCBI nr
Match: XP_038902010.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Benincasa hispida])

HSP 1 Score: 713.4 bits (1840), Expect = 1.1e-201
Identity = 360/411 (87.59%), Postives = 385/411 (93.67%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQL+FY NHGNHEQAL+LFHHMQ SLAL LDAHVFSL LKSCTAI+R +LG AIH
Sbjct: 8   LLSYTKQLSFYANHGNHEQALSLFHHMQTSLALDLDAHVFSLVLKSCTAIRRSYLGTAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+ KSSLLSSPFVA ALVDMYGK +S+SLARKLFDEIP RSVVVWNA+LSLYAH+NML 
Sbjct: 68  AHSVKSSLLSSPFVACALVDMYGKSLSISLARKLFDEIPHRSVVVWNAMLSLYAHSNMLF 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
           DALRLFEA+DV PNTSSFN IIAGLS+LEDGFKAIAFYR+MQQ+GLKPNLITLLALLP  
Sbjct: 128 DALRLFEAIDVPPNTSSFNPIIAGLSKLEDGFKAIAFYRQMQQYGLKPNLITLLALLPTS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVA+LDLIKQIHGFAMRSD+  + QL  GLVEAYGRCGCLSYAHNVFD+M ERDVVAWS
Sbjct: 188 VGVASLDLIKQIHGFAMRSDMGCNPQLSCGLVEAYGRCGCLSYAHNVFDNMTERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEARTALNIFQQMEL +V PDEITFIGVLKACSHVGLAD+ALDYFSRMQRD
Sbjct: 248 SLISAHALHGEARTALNIFQQMELGKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+A+SDHYSCLVDVL RAGRL+EA+ IIREMPVR TAKAWGALLGACRIYG+LELAEI
Sbjct: 308 YGLQANSDHYSCLVDVLSRAGRLYEAYGIIREMPVRATAKAWGALLGACRIYGDLELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMK+RRVKVVPGSS
Sbjct: 368 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKKRRVKVVPGSS 418

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BLAST of MS004840.1 vs. NCBI nr
Match: KAG6570852.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 713.4 bits (1840), Expect = 1.1e-201
Identity = 363/411 (88.32%), Postives = 380/411 (92.46%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQL+FY NHGNHEQALALFHHMQASLAL LDAHVFSL LKSCTAI+RP LG AIH
Sbjct: 8   LLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPQLGTAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AHA KSSLLSSPFVA ALVDMYGK +SVSLARKLFDEIP R+VV WNA+LSLY H+NML 
Sbjct: 68  AHATKSSLLSSPFVACALVDMYGKSMSVSLARKLFDEIPHRTVVAWNAMLSLYTHSNMLP 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
           DALRLFEAMDV PNTSSFN IIAGL  L+DGFKAIAFYRKMQQ GLKPNLITLLALLPA 
Sbjct: 128 DALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAIAFYRKMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVAALDLIKQIHGFAMR+D+  H QLGSGLVEAYGRCGCL+YAHNVFD M ERDVVAWS
Sbjct: 188 VGVAALDLIKQIHGFAMRNDLGCHPQLGSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEARTALNIFQQMEL +V PDEITFIGVLKACSHVGLAD+ALDYFSRMQRD
Sbjct: 248 SLISAHALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVD L RAGRLHEA++IIREMPVRVTAKAWGALLGACR YGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALF+IEPENAANYVLL KMYASVGRHEEAQR+R EMKERRVK VPGSS
Sbjct: 368 AGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSS 416

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BLAST of MS004840.1 vs. ExPASy Swiss-Prot
Match: Q9LR72 (Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E3 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 9.5e-151
Identity = 272/412 (66.02%), Postives = 321/412 (77.91%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           L+S TKQL+ Y N GNHEQAL LF  M +S AL LDAHVFSL LKSC A  RP LG ++H
Sbjct: 12  LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+ KS+ LS+PFV  AL+DMYGKC+SVS ARKLFDEIPQR+ VVWNA++S Y H   + 
Sbjct: 72  AHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVK 131

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDG-FKAIAFYRKMQQFGLKPNLITLLALLPA 180
           +A+ L+EAMDV PN SSFN+II GL   EDG ++AI FYRKM +F  KPNLITLLAL+ A
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSA 191

Query: 181 CVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAW 240
           C  + A  LIK+IH +A R+ I  H QL SGLVEAYGRCG + Y   VFDSM++RDVVAW
Sbjct: 192 CSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAW 251

Query: 241 SSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQR 300
           SSLISA+ALHG+A +AL  FQ+MELA+V PD+I F+ VLKACSH GLAD+AL YF RMQ 
Sbjct: 252 SSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQG 311

Query: 301 DYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAE 360
           DYGL+AS DHYSCLVDVL R GR  EA+ +I+ MP + TAK WGALLGACR YGE+ELAE
Sbjct: 312 DYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAE 371

Query: 361 IAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           IA + L  +EPEN ANYVLL K+Y SVGR EEA+R+R +MKE  VKV PGSS
Sbjct: 372 IAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423

[Close]

BLAST of MS004840.1 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.7e-76
Identity = 144/376 (38.30%), Postives = 231/376 (61.44%), Query Frame = 0


Query: 36  DAHVFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVDMYGKCISVSLARKLF 95
           D   F    KSC ++   +LG  +H H  K          +AL+DMY K   +  A K+F
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVF 167

Query: 96  DEIPQRSVVVWNAILSLYAHANMLSDALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAI 155
           DE+ +R V+ WN++LS YA    +  A  LF  M +     S+ ++I+G + +    +A+
Sbjct: 168 DEMYERDVISWNSLLSGYARLGQMKKAKGLFHLM-LDKTIVSWTAMISGYTGIGCYVEAM 227

Query: 156 AFYRKMQQFGLKPNLITLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAY 215
            F+R+MQ  G++P+ I+L+++LP+C  + +L+L K IH +A R        + + L+E Y
Sbjct: 228 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 287

Query: 216 GRCGCLSYAHNVFDSMKERDVVAWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFI 275
            +CG +S A  +F  M+ +DV++WS++IS +A HG A  A+  F +M+ A+V P+ ITF+
Sbjct: 288 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 347

Query: 276 GVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPV 335
           G+L ACSHVG+  + L YF  M++DY ++   +HY CL+DVL RAG+L  A +I + MP+
Sbjct: 348 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 407

Query: 336 RVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRM 395
           +  +K WG+LL +CR  G L++A +A   L E+EPE+  NYVLLA +YA +G+ E+  R+
Sbjct: 408 KPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRL 467

Query: 396 RREMKERRVKVVPGSS 412
           R+ ++   +K  PG S
Sbjct: 468 RKMIRNENMKKTPGGS 482

[Close]

BLAST of MS004840.1 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 280.0 bits (715), Expect = 4.2e-74
Identity = 149/414 (35.99%), Postives = 241/414 (58.21%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           ++S+   L+ +   G H++A+ +F  +   L    D    S  L S    +  ++G  IH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 276

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
            +  K  LL    V SA++DMYGK   V     LF++       V NA ++  +   ++ 
Sbjct: 277 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 336

Query: 121 DALRLFEAMDVQP---NTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALL 180
            AL +FE    Q    N  S+ SIIAG ++     +A+  +R+MQ  G+KPN +T+ ++L
Sbjct: 337 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 396

Query: 181 PACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVV 240
           PAC  +AAL   +  HGFA+R  +  ++ +GS L++ Y +CG ++ +  VF+ M  +++V
Sbjct: 397 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 456

Query: 241 AWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRM 300
            W+SL++  ++HG+A+  ++IF+ +    + PD I+F  +L AC  VGL D+   YF  M
Sbjct: 457 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 516

Query: 301 QRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELEL 360
             +YG+K   +HYSC+V++LGRAG+L EA+D+I+EMP    +  WGALL +CR+   ++L
Sbjct: 517 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 576

Query: 361 AEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AEIA + LF +EPEN   YVLL+ +YA+ G   E   +R +M+   +K  PG S
Sbjct: 577 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

[Close]

BLAST of MS004840.1 vs. ExPASy Swiss-Prot
Match: Q9C501 (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E57 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 7.5e-71
Identity = 141/378 (37.30%), Postives = 226/378 (59.79%), Query Frame = 0


Query: 39  VFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVDMYGKCIS-VSLARKLFDE 98
           ++ L LKS   +        +H H  KS       V +AL+  Y   +S ++LAR+LFDE
Sbjct: 128 IYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDE 187

Query: 99  IPQRSVVVWNAILSLYAHANMLSDALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAF 158
           + +R+VV W A+LS YA +  +S+A+ LFE M  + +  S+N+I+A  ++     +A++ 
Sbjct: 188 MSERNVVSWTAMLSGYARSGDISNAVALFEDMP-ERDVPSWNAILAACTQNGLFLEAVSL 247

Query: 159 YRKM-QQFGLKPNLITLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYG 218
           +R+M  +  ++PN +T++ +L AC     L L K IH FA R D+SS + + + LV+ YG
Sbjct: 248 FRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYG 307

Query: 219 RCGCLSYAHNVFDSMKERDVVAWSSLISAHALHGEARTALNIFQQM---ELAEVHPDEIT 278
           +CG L  A +VF    ++ + AW+S+I+  ALHG +  A+ +F++M    + ++ PD IT
Sbjct: 308 KCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHIT 367

Query: 279 FIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREM 338
           FIG+L AC+H GL  K   YF  M   +G++   +HY CL+D+LGRAGR  EA +++  M
Sbjct: 368 FIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTM 427

Query: 339 PVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQ 398
            ++     WG+LL AC+I+G L+LAE+A K L  + P N     ++A +Y  +G  EEA+
Sbjct: 428 KMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEAR 487

Query: 399 RMRREMKERRVKVVPGSS 412
           R R+ +K +     PG S
Sbjct: 488 RARKMIKHQNAYKPPGWS 504

[Close]

BLAST of MS004840.1 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.8e-70
Identity = 150/399 (37.59%), Postives = 226/399 (56.64%), Query Frame = 0


Query: 15  GNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRP--HL--GIAIHAHAAKSSLLS 74
           G+ E+ L L+  M   + +  D   ++  LK+C A +    HL  G  IHAH  +    S
Sbjct: 157 GHGEEVLGLYWKMN-RIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 216

Query: 75  SPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLSDALRLFEAMD 134
             ++ + LVDMY +   V  A  +F  +P R+VV W+A+++ YA      +ALR F  M 
Sbjct: 217 HVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 276

Query: 135 VQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPACVGVAALDLIK 194
            +   SS                              PN +T++++L AC  +AAL+  K
Sbjct: 277 RETKDSS------------------------------PNSVTMVSVLQACASLAALEQGK 336

Query: 195 QIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWSSLISAHALHG 254
            IHG+ +R  + S L + S LV  YGRCG L     VFD M +RDVV+W+SLIS++ +HG
Sbjct: 337 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 396

Query: 255 EARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHY 314
             + A+ IF++M      P  +TF+ VL ACSH GL ++    F  M RD+G+K   +HY
Sbjct: 397 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY 456

Query: 315 SCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEP 374
           +C+VD+LGRA RL EA  ++++M      K WG+LLG+CRI+G +ELAE A + LF +EP
Sbjct: 457 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 516

Query: 375 ENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPG 410
           +NA NYVLLA +YA     +E +R+++ ++ R ++ +PG
Sbjct: 517 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524

[Close]

BLAST of MS004840.1 vs. ExPASy TrEMBL
Match: A0A6J1CFE4 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Momordica charantia OX=3673 GN=LOC111011197 PE=4 SV=1)

HSP 1 Score: 801.6 bits (2069), Expect = 1.5e-228
Identity = 408/411 (99.27%), Postives = 410/411 (99.76%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH
Sbjct: 11  LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 70

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS
Sbjct: 71  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 130

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
           DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLI+LLALLPAC
Sbjct: 131 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLISLLALLPAC 190

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS
Sbjct: 191 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 250

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD
Sbjct: 251 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 310

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVR TAKAWGALLGACRIYGELELAEI
Sbjct: 311 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRATAKAWGALLGACRIYGELELAEI 370

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKM+ASVGRHEEAQRMRREMKERRVKVVPGSS
Sbjct: 371 AGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMKERRVKVVPGSS 421

[Close]

BLAST of MS004840.1 vs. ExPASy TrEMBL
Match: A0A0A0KE48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124020 PE=4 SV=1)

HSP 1 Score: 727.6 bits (1877), Expect = 2.8e-206
Identity = 366/411 (89.05%), Postives = 389/411 (94.65%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQL+FY NHGNHEQ L+LFHHMQASLALGLDAHVFSL LKSCTA++RPHLGIAIH
Sbjct: 8   LLSYTKQLSFYANHGNHEQTLSLFHHMQASLALGLDAHVFSLVLKSCTALRRPHLGIAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+AKSSLLSSPFVA ALVDMYGK +SV+LARKLFDEIP RSVVVWN +LSLY HANML 
Sbjct: 68  AHSAKSSLLSSPFVACALVDMYGKSLSVTLARKLFDEIPHRSVVVWNVMLSLYVHANMLF 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
            AL+LFEAMDV PN SSFN+I+AGLS+LEDGFKAIAFYR+MQQ GLKPNLITLLALLPA 
Sbjct: 128 GALQLFEAMDVPPNASSFNAIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVA+LDLIKQIHGFAMR+DI +HLQL SGLVEAYGRCGCLSYAHNVFD+M ERDVVAWS
Sbjct: 188 VGVASLDLIKQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYAHNVFDNMTERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEA TALNIFQQME  +V PDEITFIGVLKACSHVGLA++ALDYF+RMQRD
Sbjct: 248 SLISAHALHGEASTALNIFQQMESCKVQPDEITFIGVLKACSHVGLANEALDYFNRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVDVL RAGRLHEA+DIIREMPVRVTAKAWGALLGACRIYGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDVLSRAGRLHEAYDIIREMPVRVTAKAWGALLGACRIYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS
Sbjct: 368 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 418

[Close]

BLAST of MS004840.1 vs. ExPASy TrEMBL
Match: A0A1S4DX62 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucumis melo OX=3656 GN=LOC103490472 PE=4 SV=1)

HSP 1 Score: 718.0 bits (1852), Expect = 2.2e-203
Identity = 362/411 (88.08%), Postives = 385/411 (93.67%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           L+SY+KQL+FY  HG+HEQ L+LFHHMQASLAL LDAHVFSL LKSCTA++RPHLGIAIH
Sbjct: 8   LVSYSKQLSFYAKHGSHEQTLSLFHHMQASLALALDAHVFSLVLKSCTALRRPHLGIAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+AKSSLLSSPFVA ALVDMYGK +SVSLARKLFDEIP RSVVVWN +LSLY H+NML 
Sbjct: 68  AHSAKSSLLSSPFVACALVDMYGKSLSVSLARKLFDEIPHRSVVVWNVMLSLYVHSNMLF 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
            AL+LFEAMDV PN SSFN I+AGLS+LEDGFKAIAFYR+MQQ GLKPNLITLLALLPA 
Sbjct: 128 GALQLFEAMDVPPNASSFNPIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVA+LDLIKQIHGFAMR+DI  HLQL SGLVEAYGRCGCLSYAHNVFD+M ERDVVAWS
Sbjct: 188 VGVASLDLIKQIHGFAMRNDIGGHLQLSSGLVEAYGRCGCLSYAHNVFDNMTERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEA TALNIFQQMEL++V PD ITFIGVLKACSHVGLAD+ALDYF+RMQRD
Sbjct: 248 SLISAHALHGEASTALNIFQQMELSKVQPDAITFIGVLKACSHVGLADEALDYFNRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVDVL RAGRLHEA DIIREMPVRVTAKAWGALLGACRIYGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDVLSRAGRLHEAHDIIREMPVRVTAKAWGALLGACRIYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS
Sbjct: 368 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 418

[Close]

BLAST of MS004840.1 vs. ExPASy TrEMBL
Match: A0A6J1FYR9 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita moschata OX=3662 GN=LOC111449013 PE=4 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 6.1e-201
Identity = 361/411 (87.83%), Postives = 379/411 (92.21%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQL+FY NHGNHEQALALFHHMQASLAL LDAHVFSL LKSCTAI+RPHLG AIH
Sbjct: 8   LLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHLGTAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AHA KSSLLSSPFVA ALVDMYGK +SV LARKLFDEIP R+VV WNA+LSLY H+NML 
Sbjct: 68  AHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLP 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
           DALRLFEAMDV PNTSSFN IIAGL  L+DGFKAIAFYRKMQQ GLKPNLITLLALLPA 
Sbjct: 128 DALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAIAFYRKMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVAALDLIKQIHGFAMR+D+  H QL SGLVEAYGRCGCL+YAHNVFD M ERDVVAWS
Sbjct: 188 VGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISA+ALHGEARTALNIFQQMEL +V PDEITFIGVLKACSHVGLAD+ALDYFSRMQRD
Sbjct: 248 SLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVD L RAGRLHEA++IIREMPVRVTAKAWGALLGACR YGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALF+IEPENAANYVLL KMYASVGRHEEAQR+R EMKERRVK VPGSS
Sbjct: 368 AGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSS 416

[Close]

BLAST of MS004840.1 vs. ExPASy TrEMBL
Match: A0A6J1J925 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita maxima OX=3661 GN=LOC111484567 PE=4 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.3e-195
Identity = 354/411 (86.13%), Postives = 375/411 (91.24%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           LLSYTKQL+FY NHGNHEQALALF HMQASLAL LDAHVFSL LKSCTAI+RP LG AIH
Sbjct: 8   LLSYTKQLSFYANHGNHEQALALFLHMQASLALALDAHVFSLVLKSCTAIRRPLLGTAIH 67

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AHA KSSLLS+PFVA ALVDMYGK +SV LARKLFDEIPQR+VV WN +LSLY H+NML 
Sbjct: 68  AHATKSSLLSNPFVACALVDMYGKSMSVPLARKLFDEIPQRTVVAWNTMLSLYTHSNMLP 127

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPAC 180
           DALRLFEAMDV PNTSSFN IIAGL  L+DGFKAI+FYRKMQQ GLKPNLITLLALLPA 
Sbjct: 128 DALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAISFYRKMQQCGLKPNLITLLALLPAS 187

Query: 181 VGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWS 240
           VGVAALDLIKQIHGFAMR+D+  H QL SGLVEAYGRCGCL+YAHNVFD M ERDVVAWS
Sbjct: 188 VGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWS 247

Query: 241 SLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRD 300
           SLISAHALHGEARTALNIFQQM L +V PDEITFIGVLKACS+VGLAD+AL YFSRMQRD
Sbjct: 248 SLISAHALHGEARTALNIFQQMALCKVQPDEITFIGVLKACSYVGLADEALYYFSRMQRD 307

Query: 301 YGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEI 360
           YGL+ASSDHYSCLVD L RAGRLHEA++IIREMPVRVTAKAWGALLGACR YGELELAEI
Sbjct: 308 YGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELELAEI 367

Query: 361 AGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AGKALF+IEPENAANYVLL KMYASVGRHEEAQR+R EMKERRV+ VPGSS
Sbjct: 368 AGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVQAVPGSS 416

[Close]

BLAST of MS004840.1 vs. TAIR 10
Match: AT1G03510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 534.6 bits (1376), Expect = 6.8e-152
Identity = 272/412 (66.02%), Postives = 321/412 (77.91%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           L+S TKQL+ Y N GNHEQAL LF  M +S AL LDAHVFSL LKSC A  RP LG ++H
Sbjct: 12  LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
           AH+ KS+ LS+PFV  AL+DMYGKC+SVS ARKLFDEIPQR+ VVWNA++S Y H   + 
Sbjct: 72  AHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVK 131

Query: 121 DALRLFEAMDVQPNTSSFNSIIAGLSELEDG-FKAIAFYRKMQQFGLKPNLITLLALLPA 180
           +A+ L+EAMDV PN SSFN+II GL   EDG ++AI FYRKM +F  KPNLITLLAL+ A
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSA 191

Query: 181 CVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAW 240
           C  + A  LIK+IH +A R+ I  H QL SGLVEAYGRCG + Y   VFDSM++RDVVAW
Sbjct: 192 CSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAW 251

Query: 241 SSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQR 300
           SSLISA+ALHG+A +AL  FQ+MELA+V PD+I F+ VLKACSH GLAD+AL YF RMQ 
Sbjct: 252 SSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQG 311

Query: 301 DYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAE 360
           DYGL+AS DHYSCLVDVL R GR  EA+ +I+ MP + TAK WGALLGACR YGE+ELAE
Sbjct: 312 DYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAE 371

Query: 361 IAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           IA + L  +EPEN ANYVLL K+Y SVGR EEA+R+R +MKE  VKV PGSS
Sbjct: 372 IAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423

[Close]

BLAST of MS004840.1 vs. TAIR 10
Match: AT2G20540.1 (mitochondrial editing factor 21 )

HSP 1 Score: 287.3 bits (734), Expect = 1.9e-77
Identity = 144/376 (38.30%), Postives = 231/376 (61.44%), Query Frame = 0


Query: 36  DAHVFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVDMYGKCISVSLARKLF 95
           D   F    KSC ++   +LG  +H H  K          +AL+DMY K   +  A K+F
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVF 167

Query: 96  DEIPQRSVVVWNAILSLYAHANMLSDALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAI 155
           DE+ +R V+ WN++LS YA    +  A  LF  M +     S+ ++I+G + +    +A+
Sbjct: 168 DEMYERDVISWNSLLSGYARLGQMKKAKGLFHLM-LDKTIVSWTAMISGYTGIGCYVEAM 227

Query: 156 AFYRKMQQFGLKPNLITLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAY 215
            F+R+MQ  G++P+ I+L+++LP+C  + +L+L K IH +A R        + + L+E Y
Sbjct: 228 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 287

Query: 216 GRCGCLSYAHNVFDSMKERDVVAWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFI 275
            +CG +S A  +F  M+ +DV++WS++IS +A HG A  A+  F +M+ A+V P+ ITF+
Sbjct: 288 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 347

Query: 276 GVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPV 335
           G+L ACSHVG+  + L YF  M++DY ++   +HY CL+DVL RAG+L  A +I + MP+
Sbjct: 348 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 407

Query: 336 RVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRM 395
           +  +K WG+LL +CR  G L++A +A   L E+EPE+  NYVLLA +YA +G+ E+  R+
Sbjct: 408 KPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRL 467

Query: 396 RREMKERRVKVVPGSS 412
           R+ ++   +K  PG S
Sbjct: 468 RKMIRNENMKKTPGGS 482

[Close]

BLAST of MS004840.1 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 280.0 bits (715), Expect = 3.0e-75
Identity = 149/414 (35.99%), Postives = 241/414 (58.21%), Query Frame = 0


Query: 1   LLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHLGIAIH 60
           ++S+   L+ +   G H++A+ +F  +   L    D    S  L S    +  ++G  IH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 276

Query: 61  AHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLS 120
            +  K  LL    V SA++DMYGK   V     LF++       V NA ++  +   ++ 
Sbjct: 277 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 336

Query: 121 DALRLFEAMDVQP---NTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALL 180
            AL +FE    Q    N  S+ SIIAG ++     +A+  +R+MQ  G+KPN +T+ ++L
Sbjct: 337 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 396

Query: 181 PACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVV 240
           PAC  +AAL   +  HGFA+R  +  ++ +GS L++ Y +CG ++ +  VF+ M  +++V
Sbjct: 397 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 456

Query: 241 AWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRM 300
            W+SL++  ++HG+A+  ++IF+ +    + PD I+F  +L AC  VGL D+   YF  M
Sbjct: 457 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 516

Query: 301 QRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELEL 360
             +YG+K   +HYSC+V++LGRAG+L EA+D+I+EMP    +  WGALL +CR+   ++L
Sbjct: 517 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 576

Query: 361 AEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSS 412
           AEIA + LF +EPEN   YVLL+ +YA+ G   E   +R +M+   +K  PG S
Sbjct: 577 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

[Close]

BLAST of MS004840.1 vs. TAIR 10
Match: AT1G33350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 269.2 bits (687), Expect = 5.3e-72
Identity = 141/378 (37.30%), Postives = 226/378 (59.79%), Query Frame = 0


Query: 39  VFSLTLKSCTAIQRPHLGIAIHAHAAKSSLLSSPFVASALVDMYGKCIS-VSLARKLFDE 98
           ++ L LKS   +        +H H  KS       V +AL+  Y   +S ++LAR+LFDE
Sbjct: 128 IYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDE 187

Query: 99  IPQRSVVVWNAILSLYAHANMLSDALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAF 158
           + +R+VV W A+LS YA +  +S+A+ LFE M  + +  S+N+I+A  ++     +A++ 
Sbjct: 188 MSERNVVSWTAMLSGYARSGDISNAVALFEDMP-ERDVPSWNAILAACTQNGLFLEAVSL 247

Query: 159 YRKM-QQFGLKPNLITLLALLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYG 218
           +R+M  +  ++PN +T++ +L AC     L L K IH FA R D+SS + + + LV+ YG
Sbjct: 248 FRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYG 307

Query: 219 RCGCLSYAHNVFDSMKERDVVAWSSLISAHALHGEARTALNIFQQM---ELAEVHPDEIT 278
           +CG L  A +VF    ++ + AW+S+I+  ALHG +  A+ +F++M    + ++ PD IT
Sbjct: 308 KCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHIT 367

Query: 279 FIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREM 338
           FIG+L AC+H GL  K   YF  M   +G++   +HY CL+D+LGRAGR  EA +++  M
Sbjct: 368 FIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTM 427

Query: 339 PVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQ 398
            ++     WG+LL AC+I+G L+LAE+A K L  + P N     ++A +Y  +G  EEA+
Sbjct: 428 KMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEAR 487

Query: 399 RMRREMKERRVKVVPGSS 412
           R R+ +K +     PG S
Sbjct: 488 RARKMIKHQNAYKPPGWS 504

[Close]

BLAST of MS004840.1 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 267.3 bits (682), Expect = 2.0e-71
Identity = 150/399 (37.59%), Postives = 226/399 (56.64%), Query Frame = 0


Query: 15  GNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRP--HL--GIAIHAHAAKSSLLS 74
           G+ E+ L L+  M   + +  D   ++  LK+C A +    HL  G  IHAH  +    S
Sbjct: 157 GHGEEVLGLYWKMN-RIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 216

Query: 75  SPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAHANMLSDALRLFEAMD 134
             ++ + LVDMY +   V  A  +F  +P R+VV W+A+++ YA      +ALR F  M 
Sbjct: 217 HVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 276

Query: 135 VQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLITLLALLPACVGVAALDLIK 194
            +   SS                              PN +T++++L AC  +AAL+  K
Sbjct: 277 RETKDSS------------------------------PNSVTMVSVLQACASLAALEQGK 336

Query: 195 QIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERDVVAWSSLISAHALHG 254
            IHG+ +R  + S L + S LV  YGRCG L     VFD M +RDVV+W+SLIS++ +HG
Sbjct: 337 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 396

Query: 255 EARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFSRMQRDYGLKASSDHY 314
             + A+ IF++M      P  +TF+ VL ACSH GL ++    F  M RD+G+K   +HY
Sbjct: 397 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY 456

Query: 315 SCLVDVLGRAGRLHEAFDIIREMPVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEP 374
           +C+VD+LGRA RL EA  ++++M      K WG+LLG+CRI+G +ELAE A + LF +EP
Sbjct: 457 ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEP 516

Query: 375 ENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPG 410
           +NA NYVLLA +YA     +E +R+++ ++ R ++ +PG
Sbjct: 517 KNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524

The following BLAST results are available for this feature:

BLAST of MS004840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140575.1	3.2e-228	99.27	putative pentatricopeptide repeat-containing protein At1g03510 [Momordica charan...	[more]
XP_031743918.1	5.9e-206	89.05	putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus]...	[more]
XP_008448216.1	4.6e-203	88.08	PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Cucum...	[more]
XP_038902010.1	1.1e-201	87.59	putative pentatricopeptide repeat-containing protein At1g03510 [Benincasa hispid...	[more]
KAG6570852.1	1.1e-201	88.32	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of MS004840.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR72	9.5e-151	66.02	Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis th...	[more]
Q9SIL5	2.7e-76	38.30	Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX...	[more]
Q9LNU6	4.2e-74	35.99	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX...	[more]
Q9C501	7.5e-71	37.30	Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana OX...	[more]
Q9STF3	2.8e-70	37.59	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]

BLAST of MS004840.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFE4	1.5e-228	99.27	putative pentatricopeptide repeat-containing protein At1g03510 OS=Momordica char...	[more]
A0A0A0KE48	2.8e-206	89.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124020 PE=4 SV=1	[more]
A0A1S4DX62	2.2e-203	88.08	putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucumis melo O...	[more]
A0A6J1FYR9	6.1e-201	87.83	putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita mosc...	[more]
A0A6J1J925	1.3e-195	86.13	putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita maxi...	[more]

BLAST of MS004840.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03510.1	6.8e-152	66.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G20540.1	1.9e-77	38.30	mitochondrial editing factor 21	[more]
AT1G20230.1	3.0e-75	35.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G33350.1	5.3e-72	37.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G46790.1	2.0e-71	37.59	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 104..129 e-value: 7.4E-4 score: 17.5 coord: 237..271 e-value: 3.4E-4 score: 18.6 coord: 137..169 e-value: 7.2E-5 score: 20.7 coord: 310..333 e-value: 1.4E-4 score: 19.8 coord: 273..304 e-value: 0.0028 score: 15.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 137..166 e-value: 0.0086 score: 16.3 coord: 376..403 e-value: 0.025 score: 14.8 coord: 104..129 e-value: 6.1E-4 score: 19.9 coord: 11..28 e-value: 1.2 score: 9.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 234..282 e-value: 4.3E-7 score: 30.0
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 302..333 e-value: 2.2E-5 score: 24.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 235..269 score: 9.920034
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 134..168 score: 9.96388
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 372..406 score: 9.284279
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 3..208 e-value: 4.8E-29 score: 103.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 211..408 e-value: 2.2E-37 score: 131.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 106..396
None	No IPR available	PANTHER	PTHR24015:SF858	OS03G0852000 PROTEIN	coord: 1..411
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 1..411

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS004840	MS004840	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS004840.1-cds	MS004840.1-cds-scaffold176:909681..910913	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS004840.1	MS004840.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding