MS004151.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS004151.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S25
Location	scaffold92: 353445 .. 354933 (+)
Sequence length	291
RNA-Seq Expression	MS004151.1
Synteny	MS004151.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCGAAACCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGGTGAGATTCTTGGAACTATATTTTCGACATTATTTCAATTCCTAGCCATATCATTTTAGTTGAGTTTGCATTTCTTTTTTTAGGTTTTATATAGTCTTATGGTTACAGTGTTTTCCTGAACTTTCTGCCGTGGATTGTTGTTTAAGTTCATCTATGATACTGTGATGCGTTGTGGGAAAAGGATTTCTAACACTTCTACTAAATAATGGTTTCGTTTCGAACTTCATGAGAACAATGAGGATACATCGAAATAACTATACAGGAAAATTAGTGTTATGGGCACCATTCACTTATGATTTTGGATGTGATTCCACCCCTTTTTTTAAGAAATAGTAATTGTGATATCAGGAGAGTATCTCCTGTTTCTATTTCTACCTTGCAACTGTAAAATTTTGATTCTTATTGCTAAGATTATGCAGTTTTCTCATTTATAATTCTGTTTGTCAATATTTATACAACAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTATTCGACCAAGGAACTTATGACAAGCTTCTCGTAGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGGTAAGTTTCTCAACCTCTTCTCAACCATAATGTTGAACATATATTTTGTTTGGCTTGCATTCGCAATGATGTTATTCTAGTTAGCATACTCCTGATACGAACAATAACCATACCTTTTTCATGTCTTCAAATTTCTGTTTAAATTGTTTATTCAATCTATCTGACTGTTTGTGTTCCCCAGGGTAGGAAAGTGGCCATATAATTGATCGAAAAATCTCCCTTTCCTTCCCCCTTCCCTCTATTACCTTCAATTTGTGGATTCTTGTTTTGCTGAAAATTGTGTCTTTGGATACCTGATTGTCTTTATGTTTTCAGAAAATCAATTGGTAATCAGGCTGGGACATTTTTCATGTACAGTATGCATCTTTCTGGTTAAATTCCTAACTCAAAAAATAGACACTATATTGGTCAAAAAGACATGGATTCTATCGAGAAACCACAGGCCCAAATTCCTTTTGAGAACCTATGTAGCTGTGTTAGGATATCAAATCTAACGATTTATGAGACTAATGGGGTTCTATTACTTTATATAGGAACTCTCAACATCAATTCTATAAAACATAATGGCCTAAGATTTCTTTGTATGAGGAAAAACAAAACAAAATAGAAATATTACATTCCAGGTCCTCTGTTTTTATTGTTTTGGAACATATTTGTTGCATCACACCACGTCTTTTTAGTATTGAGTTCATCTAACTTGTGTTTGATAAATGATTATCTGCCATTCCGATTTTCAGATCAATGGATCTCTAGCACGAAGAGCCATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCCACCAATACC

mRNA sequence

GCCTCGAAACCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTATTCGACCAAGGAACTTATGACAAGCTTCTCGTAGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCTCTAGCACGAAGAGCCATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCCACCAATACC

Coding sequence (CDS)

GCCTCGAAACCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTATTCGACCAAGGAACTTATGACAAGCTTCTCGTAGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCTCTAGCACGAAGAGCCATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTGTCTGCTCATGCCAGCCAGGAGATCTACACAAGGGCCACCAATACC

Protein sequence

ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT

Homology

[Close]

BLAST of MS004151.1 vs. NCBI nr
Match: XP_022150617.1 (40S ribosomal protein S25-2-like [Momordica charantia])

HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. NCBI nr
Match: XP_016900931.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_038878537.1 40S ribosomal protein S25-2 [Benincasa hispida] >TYK10188.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-42
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. NCBI nr
Match: XP_022961406.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S ribosomal protein S25-2-like [Cucurbita maxima] >XP_023545343.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo] >KAG6590412.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023962.1 40S ribosomal protein S25-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-41
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. NCBI nr
Match: XP_022945101.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S ribosomal protein S25-2 [Cucurbita maxima] >XP_023541368.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo] >KAG7012952.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 3.1e-41
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. NCBI nr
Match: KAG6573888.1 (40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.3 bits (451), Expect = 3.1e-41
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 86  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 145

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 146 INGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 182

[Close]

BLAST of MS004151.1 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.2e-41
Identity = 86/97 (88.66%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL+TPSILSDR+R
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 72  INGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.1e-40
Identity = 85/97 (87.63%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL+TPS+LSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           I+GSLAR+AI+DLMARG IRMVSAHASQ+IYTRATNT
Sbjct: 72  ISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 8.0e-40
Identity = 83/97 (85.57%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+TPSILSDR+R
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 72  INGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 8.8e-39
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+TPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 97
           INGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 72  INGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of MS004151.1 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-36
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+TPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRAT 96
           INGSLAR+AI+DLM +G IRMVS H+SQ+I TRAT
Sbjct: 72  INGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of MS004151.1 vs. ExPASy TrEMBL
Match: A0A6J1DB76 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111018712 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy TrEMBL
Match: A0A5D3CG38 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003330 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy TrEMBL
Match: A0A1S4DY71 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103492227 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy TrEMBL
Match: A0A6J1HUK6 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467942 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.9e-42
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. ExPASy TrEMBL
Match: A0A6J1HAA0 (40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111461987 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.9e-42
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 72  INGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-42
Identity = 86/97 (88.66%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL+TPSILSDR+R
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 72  INGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 164.1 bits (414), Expect = 5.7e-41
Identity = 83/97 (85.57%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+TPSILSDR+R
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 72  INGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of MS004151.1 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-40
Identity = 85/97 (87.63%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL+TPSILSDR+R
Sbjct: 12  SSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAI++LMA+GLIRMVSAH+SQ+IYTRATNT
Sbjct: 72  INGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of MS004151.1 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 160.6 bits (405), Expect = 6.3e-40
Identity = 83/96 (86.46%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+TPSILSDRLR
Sbjct: 12  SSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATN 97
           INGSLARRAI++LMA+G IRMVSAH+SQ+IYTRAT+
Sbjct: 72  INGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of MS004151.1 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 158.3 bits (399), Expect = 3.1e-39
Identity = 82/97 (84.54%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   ASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLR 60
           +SKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL+TPSILSDR+R
Sbjct: 12  SSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMR 71

Query: 61  INGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 98
           INGSLARRAI++LMA+G+IRMV+AH+SQ+IYTRATNT
Sbjct: 72  INGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of MS004151.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150617.1	2.8e-42	100.00	40S ribosomal protein S25-2-like [Momordica charantia]	[more]
XP_016900931.1	6.3e-42	98.97	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_038878537.1 40S r...	[more]
XP_022961406.1	1.8e-41	97.94	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S riboso...	[more]
XP_022945101.1	3.1e-41	96.91	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S riboso...	[more]
KAG6573888.1	3.1e-41	96.91	40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS004151.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	3.2e-41	88.66	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
P46301	6.1e-40	87.63	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9T029	8.0e-40	85.57	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q8GYL5	8.8e-39	86.46	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9SIW5	1.4e-36	83.16	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of MS004151.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB76	1.4e-42	100.00	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111018712 PE=3 SV...	[more]
A0A5D3CG38	3.0e-42	98.97	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4DY71	3.0e-42	98.97	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103492227 PE=3 SV=1	[more]
A0A6J1HUK6	8.9e-42	97.94	40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467942 PE=3 SV=1	[more]
A0A6J1HAA0	8.9e-42	97.94	40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111461987 PE=3 SV=...	[more]

BLAST of MS004151.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	2.3e-42	88.66	Ribosomal protein S25 family protein	[more]
AT4G39200.1	5.7e-41	85.57	Ribosomal protein S25 family protein	[more]
AT2G21580.2	1.3e-40	87.63	Ribosomal protein S25 family protein	[more]
AT4G34555.1	6.3e-40	86.46	Ribosomal protein S25 family protein	[more]
AT4G39200.2	3.1e-39	84.54	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 2..94 e-value: 1.9E-41 score: 140.3
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 2..97
None	No IPR available	GENE3D	3.30.63.20		coord: 10..97 e-value: 7.9E-41 score: 140.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 2..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS004151	MS004151	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS004151.1-cds	MS004151.1-cds-scaffold92:353445..353489	CDS
MS004151.1-cds	MS004151.1-cds-scaffold92:353951..354085	CDS
MS004151.1-cds	MS004151.1-cds-scaffold92:354823..354933	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS004151.1	MS004151.1-protein	polypeptide