MS003763.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS003763.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	scaffold127: 269684 .. 270381 (-)
Sequence length	453
RNA-Seq Expression	MS003763.1
Synteny	MS003763.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGGTCATCAGGAGATTGGATATGCAACGTTTGCCAAAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGTGGTTACCCCAAGTATGGCGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCCGGAGACTGGTACTGCTCCACCGTCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTGGTGCATTTAAGTCTGTCTATGCCGGTGATTATGGCACCTACATGATGGGTTCCGATCAGTATGCCTCAGATGCAAGTGTCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGGTACACATAACAATAAACTTTACAGTAAAAGTTGATCGTAAATTACAAAAGCCATTGAAATGAGTATATCTTTTCAAGTTATTATTGCATGTTTTGAAAGAGACACAAATGCAGATAGATAGAGTCTGCATCAATTCACCCCTGCCTTATTTTCCTTCAAATTCCCAGAAAAAAGGATCATGCTGATATTATATACTAAAAGGATTGGTCAGCTCAACTAATTTTTTTTACGTTCTTTTGGACAGATTGGGATGCGGAGTACACAATTATGCAAGCAGGTTGGAGTGTTTTAAATGCAAAACACCAAGGGATTTTGGTAAGTTTATATCAATTAGACATTTACTTATGTTATCTGCCCCT

mRNA sequence

ATGAGCTGGTCATCAGGAGATTGGATATGCAACGTTTGCCAAAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGTGGTTACCCCAAGTATGGCGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCCGGAGACTGGTACTGCTCCACCGTCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTGGTGCATTTAAGTCTGTCTATGCCGGTGATTATGGCACCTACATGATGGGTTCCGATCAGTATGCCTCAGATGCAAGTGTCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGATTGGGATGCGGAGTACACAATTATGCAAGCAGGTTGGAGTGTTTTAAATGCAAAACACCAAGGGATTTTGGTAAGTTTATATCAATTAGACATTTACTTATGTTATCTGCCCCT

Coding sequence (CDS)

ATGAGCTGGTCATCAGGAGATTGGATATGCAACGTTTGCCAAAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGTGGTTACCCCAAGTATGGCGGCCCAGACCCTTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCCGGAGACTGGTACTGCTCCACCGTCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTGGTGCATTTAAGTCTGTCTATGCCGGTGATTATGGCACCTACATGATGGGTTCCGATCAGTATGCCTCAGATGCAAGTGTCCCACCTGGATGGAAATCTGGAGACTGGATTTGCCCTAGATTGGGATGCGGAGTACACAATTATGCAAGCAGGTTGGAGTGTTTTAAATGCAAAACACCAAGGGATTTTGGTAAGTTTATATCAATTAGACATTTACTTATGTTATCTGCCCCT

Protein sequence

MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFGKFISIRHLLMLSAP

Homology

[Close]

BLAST of MS003763.1 vs. NCBI nr
Match: XP_022144861.1 (zinc finger Ran-binding domain-containing protein 2-like [Momordica charantia] >XP_022144862.1 zinc finger Ran-binding domain-containing protein 2-like [Momordica charantia])

HSP 1 Score: 320.5 bits (820), Expect = 7.9e-84
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG
Sbjct: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120

Query: 121 YASRLECFKCKTPRDFG 138
           YASRLECFKCKTPRDFG
Sbjct: 121 YASRLECFKCKTPRDFG 137

[Close]

BLAST of MS003763.1 vs. NCBI nr
Match: XP_011656267.2 (zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus] >XP_011656275.1 zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]

BLAST of MS003763.1 vs. NCBI nr
Match: XP_008465020.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 189 YASRMECFKCKTPRDFG 205

[Close]

BLAST of MS003763.1 vs. NCBI nr
Match: XP_008465021.2 (PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of MS003763.1 vs. NCBI nr
Match: XP_004150016.3 (zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus] >KAA0046754.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa] >TYK29693.1 zinc finger Ran-binding domain-containing protein 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]

BLAST of MS003763.1 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 33/130 (25.38%), Postives = 53/130 (40.77%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYN-KTEVLAGDWYCSTVNCGAHNY 65
           GDW C +C   NF++R +C RC +P       +T S     +   G+ Y +  +    NY
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANY 404

Query: 66  ASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHNYASR 125
               +       +S      G   +     +        +++GDW C   GCG HN+A  
Sbjct: 405 GGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFAKN 464

Query: 126 LECFKCKTPR 135
           + C +C   R
Sbjct: 465 VCCLRCGASR 474

[Close]

BLAST of MS003763.1 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.0e-06
Identity = 33/89 (37.08%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 50  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WK 109
           GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEA-----KMMKAGGTEIGKTLAEKSRGLFS 70

Query: 110 SGDWICPRLGCGVHNYASRLECFKCKTPR 135
           + DW C    CG  N+A R EC  C TP+
Sbjct: 71  ANDWQCKT--CGNVNWARRSECNMCNTPK 92

[Close]

BLAST of MS003763.1 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 32/89 (35.96%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 50  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WK 109
           GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEA-----KMMKAGGTEIGKTLAEKSRGLFS 70

Query: 110 SGDWICPRLGCGVHNYASRLECFKCKTPR 135
           + DW C    C   N+A R EC  C TP+
Sbjct: 71  ANDWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of MS003763.1 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 32/89 (35.96%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 50  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WK 109
           GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEA-----KMMKAGGTEIGKTLAEKSRGLFS 70

Query: 110 SGDWICPRLGCGVHNYASRLECFKCKTPR 135
           + DW C    C   N+A R EC  C TP+
Sbjct: 71  ANDWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of MS003763.1 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 32/89 (35.96%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 50  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WK 109
           GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + 
Sbjct: 11  GDWICPDKKCGNVNFARRTSCNRCGREKTTEA-----KMMKAGGTEIGKTLAEKSRGLFS 70

Query: 110 SGDWICPRLGCGVHNYASRLECFKCKTPR 135
           + DW C    C   N+A R EC  C TP+
Sbjct: 71  ANDWQCKT--CSNVNWARRSECNMCNTPK 92

[Close]

BLAST of MS003763.1 vs. ExPASy TrEMBL
Match: A0A6J1CUX1 (zinc finger Ran-binding domain-containing protein 2-like OS=Momordica charantia OX=3673 GN=LOC111014441 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.8e-84
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG
Sbjct: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120

Query: 121 YASRLECFKCKTPRDFG 138
           YASRLECFKCKTPRDFG
Sbjct: 121 YASRLECFKCKTPRDFG 137

[Close]

BLAST of MS003763.1 vs. ExPASy TrEMBL
Match: A0A5D3E0T0 (Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00450 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.4e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 1   MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 61  AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 120

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 121 YASRMECFKCKTPRDFG 137

[Close]

BLAST of MS003763.1 vs. ExPASy TrEMBL
Match: A0A0A0LWE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.4e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of MS003763.1 vs. ExPASy TrEMBL
Match: A0A1S3CPF6 (uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.4e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 69  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 128

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 129 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 188

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 189 YASRMECFKCKTPRDFG 205

[Close]

BLAST of MS003763.1 vs. ExPASy TrEMBL
Match: A0A1S3CMY6 (uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502740 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.4e-80
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CG
Sbjct: 70  MSWSAGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEALAGDWYCTTVSCG 129

Query: 61  AHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHN 120
           AHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+PPGWKSGDWICPR+GCGVHN
Sbjct: 130 AHNYASRPNCFRCGAFKSVYPGDYGAYMMGSDQYGSDASIPPGWKSGDWICPRMGCGVHN 189

Query: 121 YASRLECFKCKTPRDFG 138
           YASR+ECFKCKTPRDFG
Sbjct: 190 YASRMECFKCKTPRDFG 206

[Close]

BLAST of MS003763.1 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-57
Identity = 90/139 (64.75%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCG 60
           MSW+ GDW+C  CQ+ NFKKRE+C +CGYPK+GG D STY YN+TEV+AGDWYC  +NCG
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCG 60

Query: 61  AHNYASRPNCFRCGAFKSVYAGD-YGTYMMGSDQYASD-ASVPPGWKSGDWICPRLGCGV 120
           +HNYASR +C+RCG  K  Y    YG  M+    Y +D A+ PPGWK+GDW+CPR+GCGV
Sbjct: 61  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVA---YGNDGAACPPGWKTGDWVCPRVGCGV 120

Query: 121 HNYASRLECFKCKTPRDFG 138
           HNYASR ECFKCKT RD+G
Sbjct: 121 HNYASRAECFKCKTTRDYG 136

[Close]

BLAST of MS003763.1 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-34
Identity = 67/154 (43.51%), Postives = 89/154 (57.79%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCG-------------YPKYGGPDPSTYSYNK-TEVLAGD 65
           GDW C  C ++NF++R++C RCG             +  +GG   S + +   ++V  GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 66  WYCSTVNCGAHNYASRPNCFRCGAFK-SVYAGDYGTYMMGSDQYASD--ASVPPG----- 125
           WYC+  NCG HN+ASR  CF+CG FK    AG  G  + G   + +D   S  PG     
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124

Query: 126 -WKSGDWICPRLGCGVHNYASRLECFKCKTPRDF 137
            WKSGDWIC R+GC  HN+ASR+ECF+C  PRDF
Sbjct: 125 SWKSGDWICTRIGCNEHNFASRMECFRCNAPRDF 158

[Close]

BLAST of MS003763.1 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 59/159 (37.11%), Postives = 85/159 (53.46%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCGYPKYGG------------PDPSTYSYNK-TEVLAGDW 65
           GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +V  GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 66  YCSTVNCGAHNYASRPNCFRCGAFKSVYAGD----------------YGTYMMGSDQYAS 125
           YC+  +CG HN+A+R +CF+CGA K  ++                   G +  G      
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

Query: 126 DASVPPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRD 136
             +    WKSGDWICPR GC  HN+ASR ECF+C  P++
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of MS003763.1 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-18
Identity = 52/149 (34.90%), Postives = 68/149 (45.64%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYA 65
           GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW C+   C  +NYA
Sbjct: 7   GDWECLGCRNRNYAFRSFCNRCKQPRL-IMDNNTSPNSKWLPRIGDWICT--GCTNNNYA 66

Query: 66  SRPNCFRCGAFKSVYA------------------------GDYGTYMMGSDQYASDASVP 125
           SR  C +CG  K V A                         D    ++      + ASV 
Sbjct: 67  SREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSNATNQASVH 126

Query: 126 PGWKSGDWICPRLGCGVHNYASRLECFKC 131
             W+SGDWIC    CG HNY+SR++C KC
Sbjct: 127 KEWRSGDWIC---RCGFHNYSSRIQCKKC 149

[Close]

BLAST of MS003763.1 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04
Identity = 21/69 (30.43%), Postives = 29/69 (42.03%), Query Frame = 0


Query: 6   GDWICNVCQNVNFKKREACHRCG-YPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNY 65
           GDW C  C+ +NF K   C RC  + +           +   +  GDW C T  C   N+
Sbjct: 236 GDWYCTECKFLNFAKNIRCLRCDVFSEERLKQLKEEQKDHLPLKKGDWICQT--CNFLNF 295

Query: 66  ASRPNCFRC 74
           +    C RC
Sbjct: 296 SKNTRCLRC 302

The following BLAST results are available for this feature:

BLAST of MS003763.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144861.1	7.9e-84	100.00	zinc finger Ran-binding domain-containing protein 2-like [Momordica charantia] >...	[more]
XP_011656267.2	6.9e-80	92.70	zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus]...	[more]
XP_008465020.2	6.9e-80	92.70	PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]	[more]
XP_008465021.2	6.9e-80	92.70	PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]	[more]
XP_004150016.3	6.9e-80	92.70	zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]...	[more]

BLAST of MS003763.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	2.1e-07	25.38	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q5ZLX5	9.0e-06	37.08	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
O95218	4.5e-05	35.96	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	4.5e-05	35.96	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	4.5e-05	35.96	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]

BLAST of MS003763.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUX1	3.8e-84	100.00	zinc finger Ran-binding domain-containing protein 2-like OS=Momordica charantia ...	[more]
A0A5D3E0T0	3.4e-80	92.70	Zinc finger Ran-binding domain-containing protein 2-like isoform X3 OS=Cucumis m...	[more]
A0A0A0LWE1	3.4e-80	92.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306810 PE=4 SV=1	[more]
A0A1S3CPF6	3.4e-80	92.70	uncharacterized protein LOC103502740 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CMY6	3.4e-80	92.70	uncharacterized protein LOC103502740 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS003763.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	1.4e-57	64.75	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	2.1e-34	43.51	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	2.2e-31	37.11	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	6.2e-18	34.90	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	2.3e-04	30.43	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 6..30 e-value: 3.3E-6 score: 36.6 coord: 50..76 e-value: 2.2E-4 score: 30.6 coord: 107..133 e-value: 8.6E-9 score: 45.2
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 49..77 e-value: 2.8E-6 score: 26.5 coord: 5..32 e-value: 6.8E-7 score: 28.5 coord: 105..134 e-value: 1.4E-8 score: 33.9
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 109..130
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 52..73
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 8..27
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 48..79 score: 9.009686
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 105..136 score: 10.0034
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 4..33 score: 9.224238
None	No IPR available	GENE3D	4.10.1060.10		coord: 98..136 e-value: 4.1E-13 score: 50.4 coord: 39..78 e-value: 5.5E-11 score: 43.5 coord: 1..35 e-value: 3.6E-11 score: 44.1
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 1..139
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..139
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 102..137
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 43..78
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..34

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS003763	MS003763	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS003763.1-cds	MS003763.1-cds-scaffold127:269684..269798	CDS
MS003763.1-cds	MS003763.1-cds-scaffold127:270044..270381	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS003763.1	MS003763.1-protein	polypeptide