MS003113.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS003113.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal RNA-processing protein 8
Location	scaffold234: 499498 .. 502167 (-)
Sequence length	852
RNA-Seq Expression	MS003113.1
Synteny	MS003113.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATGAGGGTCGCTCAAGCAGAAAGAGGAAGAGGGCGAAGCGTCGTGGAGAGGACAAAAACAAAGATTTCACGAATAATATTGCGGATACTGCTCGACCTAGTAGTCGAAAAGACATCGTTGTTTCTGGTTCTTCCGGCGGGAAAAAATTCGAGAGAGTTTCCGGTTCGTCTAGTTTTCTCGATAAGGTTTGACTTCTATTCGATACTGACCTTATTTTGAAATCAATTTTACTTGGGAACTTAAGGGTTAGTTGAATGCACTGTGGTCGGGTGATGATGCAGATGCGGGCTCGTTTGTCAGGAGGGCATTTCAGGATGATTAATGAGAAGCTGTATACCTGCACGTAAATGGCTATTTCTCTTGTTCTTTTAGTTTCTTTTCTCCCCCTTGTGTTGCCAGTCTTTACTGCTTGGTTTGTGAGTTCAATTTTGAATCGAATTGCCCTTGGATTGAGAAGTTACTTTGAATTTTTGTTATCTCGTATAATTTTCAAATTTCAGCTTTTTTATTAACCGAGACTTGAAACAGAACTCTTAACTTAAATTTTGTTTAGTTCATTACAAAGTCAGACCCACATTCTCTCAAGCCAGTTGATCTTATTTTGGCGTTTCTATCTTTCAGAGGGGAAGAGGCACTTAATTATTTCAAAGAAGATCAGGTTCTGTTTGATGTGGTAAGTTCTTCTGTTCCTACTTCCTGAACTCCTAAACGTAGATTCTGTTTCCATTTAAGAATTCCTTTTTTTCACACAACACACTCACAGCAGAAGTTCATCTCTCTGTCTCTCTTTCTCTCTTTCTCTCTCTTCACAACAAAGTATTTTCAATAGATGAAACCTTAACATTGACTATATAATCATATAATATGGAATTTCTATATACTGATCTCCGATGAAGTTTTAGGAGGTGAATTTCGTTTCACAGGGCCTGGGACTAGGGTTAACTAACATTTTGATGGCTAGTATCATACAGGATATCAAGAGCAAATGTCGCATTGGCCTGAGCAGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCATGATCCCTCATTTATTGTGGCTGATTTTGGCTGTGGTGAGGATTAAGAATAATCTGTTATCTTCCCCTGATTCTCCTTGATAAATATTATATGTACTTGATCCTTTAAGAACATTCATTCTTATCAGTTCGTTTTTCTTATCTTTTTTTTTTTCTCCCTGAATCACAGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCGTTTGATCTGGTTTCCAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATGTATGTACTATATTTGAACTTAATGTTGTGAAGATGCATTGAGACATATGAATGAAATTCATGCATGAAAGTTAGCTATACACTTGTCGGATATCTTGCATCCATCTTATAAATTTGCATCATTAAGGCTGAGTTATCATTCTGTACTTTGTAGTTTTCAACAACTAGAAAGTTGTTCAGAAGATTCTCCATTCTTATGGGTTTTTTCTTTTTTATTATTATTTTTTTATACATTTGGTGATATATTGATTAAGTTCAACCATGGGAGAATAAATCATGGTGAATTGTTATTAGTGATTGAAGGGACACAAAGATGATGACCACTTGTATAACACTTAAATGTCAACAATCACAATCATTATTACAAACAGCTATAACTTAGACTAATTGAAGATATAATTGATTTCATTTCAATAGGTGCAGTTTTAGAATGATAATAGTTATCTATATTGTAAAATTTTGAGGACTTGACTAGATTGTTGGATAACTGATATGTCAGTTCTTTGAAACATATGTGGCCTTTTGTTTTCCAATCATGTTATTTGAGCAGTCACTGTTGCTATTTGGCTCTCTCAATAATCCCCGCTGTTGATGATATTAGACATGCCCATAGGAGCATTACATTACATCCATCCCTTCATTTGTCTGTTCATGAGATTCATATTAGACTCATTAGCTTTTGTCTTCAAGTATGAAAGAGACCTCTGAACGCTGGTTAATGTTTATGTCTACTGGCACTGCAGACACCTCTTGATTCTTCATCTGTGGATGTCGCCGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGAAAGTTACTTGGCGGAAGCACGGAGAGTACTTAAACCACGGTTCGTGGAACTTTTGGTTCTCAATTAGTATTATAGCCTGATAATAATTGTTTTTTCACTTGGCGGCTGAACTTTTAGTTTCTTCATGCAGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAGTTCATAAAGGCTGTTTGTGATCTAGGTTTCGTCTCAGCCTTAAAGGTATACTTATCTTCCATTATTTAGCTAGCATAATCTGTTTCTTCTGGCTGCTAATTTCTAAATACCATGTACAGGACTTCTCAAATAAGATGTTTATCTTGTTATACTTCAAGAAAAAGGTTTGCATATGTTCAGAGTAACTTTGTCCTCACATTGAAATGCCAACTGTTCGTTCTTGCATATCATATTTGTAATCCTCAACCACTTGATGCTTCTTTGGCCTCTTTTATGCAGGATGAGAAAATTTTGAAGGGGAAGGATGTCGATTGGCCCGAGCTAAAACCTTGTTTATACAAACGTCGC

mRNA sequence

ATGGCGGATGAGGGTCGCTCAAGCAGAAAGAGGAAGAGGGCGAAGCGTCGTGGAGAGGACAAAAACAAAGATTTCACGAATAATATTGCGGATACTGCTCGACCTAGTAGTCGAAAAGACATCGTTGTTTCTGGTTCTTCCGGCGGGAAAAAATTCGAGAGAGTTTCCGGTTCGTCTAGTTTTCTCGATAAGATGCGGGCTCGTTTGTCAGGAGGGCATTTCAGGATGATTAATGAGAAGCTGTATACCTGCACAGGGGAAGAGGCACTTAATTATTTCAAAGAAGATCAGGTTCTGTTTGATGTGTATCATACAGGATATCAAGAGCAAATGTCGCATTGGCCTGAGCAGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCATGATCCCTCATTTATTGTGGCTGATTTTGGCTGTGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCGTTTGATCTGGTTTCCAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATACACCTCTTGATTCTTCATCTGTGGATGTCGCCGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGAAAGTTACTTGGCGGAAGCACGGAGAGTACTTAAACCACGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAGTTCATAAAGGCTGTTTGTGATCTAGGTTTCGTCTCAGCCTTAAAGGACTTCTCAAATAAGATGTTTATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTTGAAGGGGAAGGATGTCGATTGGCCCGAGCTAAAACCTTGTTTATACAAACGTCGC

Coding sequence (CDS)

ATGGCGGATGAGGGTCGCTCAAGCAGAAAGAGGAAGAGGGCGAAGCGTCGTGGAGAGGACAAAAACAAAGATTTCACGAATAATATTGCGGATACTGCTCGACCTAGTAGTCGAAAAGACATCGTTGTTTCTGGTTCTTCCGGCGGGAAAAAATTCGAGAGAGTTTCCGGTTCGTCTAGTTTTCTCGATAAGATGCGGGCTCGTTTGTCAGGAGGGCATTTCAGGATGATTAATGAGAAGCTGTATACCTGCACAGGGGAAGAGGCACTTAATTATTTCAAAGAAGATCAGGTTCTGTTTGATGTGTATCATACAGGATATCAAGAGCAAATGTCGCATTGGCCTGAGCAGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCATGATCCCTCATTTATTGTGGCTGATTTTGGCTGTGGGGACGCACGCCTTGCAAAGAATGTGAAGAATAAAGTTTTCTCGTTTGATCTGGTTTCCAAAGATCCTTCCGTTATTGCTTGTGATATGTCAAATACACCTCTTGATTCTTCATCTGTGGATGTCGCCGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGAAAGTTACTTGGCGGAAGCACGGAGAGTACTTAAACCACGTGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAATGGAGGAGCCGACCCCAAAAAGTTCATAAAGGCTGTTTGTGATCTAGGTTTCGTCTCAGCCTTAAAGGACTTCTCAAATAAGATGTTTATCTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTTGAAGGGGAAGGATGTCGATTGGCCCGAGCTAAAACCTTGTTTATACAAACGTCGC

Protein sequence

MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSSFLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVNLIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLGFVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR

Homology

[Close]

BLAST of MS003113.1 vs. NCBI nr
Match: XP_022134543.1 (ribosomal RNA-processing protein 8 isoform X1 [Momordica charantia])

HSP 1 Score: 572.0 bits (1473), Expect = 2.8e-159
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKF+RVSGSSS
Sbjct: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN
Sbjct: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG
Sbjct: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 284

[Close]

BLAST of MS003113.1 vs. NCBI nr
Match: XP_038889651.1 (ribosomal RNA-processing protein 8 [Benincasa hispida])

HSP 1 Score: 512.7 bits (1319), Expect = 2.0e-141
Identity = 253/284 (89.08%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRSS+KRKRAKRRG +KNKD TNN+ DT  P SR+DIVVS SS GK  ++VSGSSS
Sbjct: 1   MADEGRSSKKRKRAKRRGSNKNKDSTNNLPDTTAP-SRQDIVVSPSSDGKS-QKVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYFKED+VLFDVYHTGYQEQM+HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKVLFDVYHTGYQEQMTHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           F+SALKDFSNKMFILLYFKKKD+K  +GKD+DWP+LKPCLYKRR
Sbjct: 241 FISALKDFSNKMFILLYFKKKDDKTSEGKDIDWPQLKPCLYKRR 282

[Close]

BLAST of MS003113.1 vs. NCBI nr
Match: XP_022993338.1 (ribosomal RNA-processing protein 8-like [Cucurbita maxima])

HSP 1 Score: 511.9 bits (1317), Expect = 3.5e-141
Identity = 256/285 (89.82%), Postives = 264/285 (92.63%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRS+RKRKRAKRRG DKNK FTN+I D   PS R DIVVS SS GKK  R SGSSS
Sbjct: 1   MADEGRSNRKRKRAKRRGSDKNKGFTNSIPDVTEPSGR-DIVVSTSSDGKKSRRASGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYLAEARRVLKPRGWLLISEVKSRFDPSNGGADP KF++AVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPNKFVRAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKD-VDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEKI  GKD VDWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKISNGKDIVDWPQLKPCLYKRR 284

[Close]

BLAST of MS003113.1 vs. NCBI nr
Match: XP_008458812.1 (PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037588.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa] >TYK09324.1 ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 510.8 bits (1314), Expect = 7.8e-141
Identity = 252/284 (88.73%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRSS+KRKRAKRRG DKNKD T N+ D    SS +DIVVS SS GKK +RVSGSSS
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSS-QDIVVSSSSDGKKTQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYFKED++LFD+YHTGYQEQM+HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYLAEARRVLKPRGWLLISEVKSRFDPSNGGADP+KFIKAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEK  +GKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of MS003113.1 vs. NCBI nr
Match: XP_022938486.1 (ribosomal RNA-processing protein 8-like [Cucurbita moschata])

HSP 1 Score: 509.6 bits (1311), Expect = 1.7e-140
Identity = 251/284 (88.38%), Postives = 263/284 (92.61%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRS++KRKRAKRR  DKNKDFTN+I D   PS  +DIVVS SS GKK  R SGSSS
Sbjct: 1   MADEGRSNKKRKRAKRRRSDKNKDFTNSIPDATEPSG-QDIVVSTSSDGKKSRRASGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYL EARRVLKPRGWLLISEVKSRFDPSNGGADP +F++AVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLTEARRVLKPRGWLLISEVKSRFDPSNGGADPNEFVRAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEKI  GKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKISNGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of MS003113.1 vs. ExPASy Swiss-Prot
Match: Q84JC0 (Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.7e-98
Identity = 183/287 (63.76%), Postives = 218/287 (75.96%), Query Frame = 0


Query: 3   DEGRSSRKRKRAKRRGEDKNKD-----FTNNIADTARPSSRKDIVVSGSSGGKKFERVSG 62
           +E ++SR RKR ++R    +K+        N  +       K+    GSS   K  +   
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPK--- 63

Query: 63  SSSFLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQ 122
            S+FLD +R RLSGG FRM+NEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QMS+WPE 
Sbjct: 64  PSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPEL 123

Query: 123 PVNLIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDS 182
           PVN II WL  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSVIACDMSNT L+S
Sbjct: 124 PVNSIINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLES 183

Query: 183 SSVDVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVC 242
           SSVDVAVFCLSLMG NY SY+ EA RVL+P G LLI+EVKSRFDP+NGGADPK F+KAVC
Sbjct: 184 SSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVC 243

Query: 243 DLGFVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           DLGF S LKDFSNKMFIL +FKKK++     K + WPELK CLYKRR
Sbjct: 244 DLGFTSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

[Close]

BLAST of MS003113.1 vs. ExPASy Swiss-Prot
Match: O43159 (Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 6.6e-50
Identity = 118/280 (42.14%), Postives = 157/280 (56.07%), Query Frame = 0


Query: 8   SRK--RKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSSFLDKM 67
           SRK  R R K +   KNK     + D A P+         S   +     + + +   +M
Sbjct: 184 SRKQWRNRQKNKRRCKNKFQPPQVPDQA-PAEAPTEKTEVSPVPRTDSHEARAGALRARM 243

Query: 68  RARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVNLIIKW 127
             RL G  FR +NE+LY+     A   F+ED   F +YH G+Q Q+  WP QPV+ I + 
Sbjct: 244 AQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARD 303

Query: 128 LKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVF 187
           L++   S +VADFGCGD RLA +++N V  FDL S DP V  CDM+  PL+  SVDVAVF
Sbjct: 304 LRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVF 363

Query: 188 CLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLGFVSAL 247
           CLSLMG N   +L EA RVLKP G L ++EV SRF+      D + F++AV  LGF    
Sbjct: 364 CLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVS 423

Query: 248 KDFSNKMFILLYFKKKDEKILKGK-DVDWPELKPCLYKRR 285
           KD +N  F L  F+K    ++  K  +   +L+PCLYKRR
Sbjct: 424 KDLTNSHFFLFDFQKTGPPLVGPKAQLSGLQLQPCLYKRR 456

[Close]

BLAST of MS003113.1 vs. ExPASy Swiss-Prot
Match: Q9DB85 (Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.0e-47
Identity = 118/280 (42.14%), Postives = 153/280 (54.64%), Query Frame = 0


Query: 8   SRK--RKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSSFLDKM 67
           SRK  R R K +   KNK       + A P +  +         K   + S + +   +M
Sbjct: 185 SRKQWRNRQKNKRRHKNKFRPLQTPEQAPPKASIE-ETEVPPVPKSDSQESRAGALRARM 244

Query: 68  RARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVNLIIKW 127
             RL G  FR +NE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I K 
Sbjct: 245 TQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKD 304

Query: 128 LKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVF 187
           L++   S +VADFGCGD RLA +V+N V  FDL S DP V  CDM+  PL+  SVDVAVF
Sbjct: 305 LRQKPASLVVADFGCGDCRLASSVRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVF 364

Query: 188 CLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLGFVSAL 247
           CLSLMG N   +L EA RVLK  G L ++EV SRF+      D + F+ AV  LGF    
Sbjct: 365 CLSLMGTNIRDFLEEANRVLKTGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKIIY 424

Query: 248 KDFSNKMFILLYFKKKDEKILKGK-DVDWPELKPCLYKRR 285
           KD +N  F L  F+K     +  K  +   +L+PCLYKRR
Sbjct: 425 KDLTNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKRR 457

[Close]

BLAST of MS003113.1 vs. ExPASy Swiss-Prot
Match: Q5U4F0 (Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.2e-47
Identity = 113/277 (40.79%), Postives = 152/277 (54.87%), Query Frame = 0


Query: 9   RKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSSFLDKMRAR 68
           R R++ KRR ++K +          + S  +  V        +  R   + +   +M  R
Sbjct: 190 RNRQKNKRRHKNKFRPLETQDQVPLKASIEETEVPPAPKSDSQETR---AGALRARMTQR 249

Query: 69  LSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVNLIIKWLKE 128
           L G  FR +NE+LY+     A   F+ED   F +YH G+Q Q+  WP  PV+ I K L++
Sbjct: 250 LDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVDRIAKDLRQ 309

Query: 129 HDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLS 188
              S +VADFGCGD RLA +V+N V  FDL + DP V  CDM+  PL+  SVDVAVFCLS
Sbjct: 310 KPASLVVADFGCGDCRLASSVRNPVHCFDLAALDPRVTVCDMAQVPLEDESVDVAVFCLS 369

Query: 189 LMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLGFVSALKDF 248
           LMG N   +L EA RVLKP G L ++EV SRF+      D + F+ AV  LGF    KD 
Sbjct: 370 LMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DIRTFLGAVTKLGFKVIYKDL 429

Query: 249 SNKMFILLYFKKKDEKILKGK-DVDWPELKPCLYKRR 285
           +N  F L  F+K     +  K  +   +L+PCLYK R
Sbjct: 430 TNSHFFLFDFEKTGPPRVGPKAQLSGLKLQPCLYKHR 457

[Close]

BLAST of MS003113.1 vs. ExPASy Swiss-Prot
Match: O44410 (Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.8e-47
Identity = 107/280 (38.21%), Postives = 158/280 (56.43%), Query Frame = 0


Query: 7   SSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSSFLDKMR 66
           SS +  + KR+   K K F   +A  A  +   D+  +                 + + +
Sbjct: 83  SSDENTKKKRKRGPKKKKFKPEVAGKAAETENDDVAAAPEEADP-----------IAEAK 142

Query: 67  ARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVNLIIKWL 126
            RL  G FR +NEKLYTCTG EA ++FKED   FD+YH G+ +Q+  WP  P+  II+WL
Sbjct: 143 KRLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRWL 202

Query: 127 KEHDPSFIVADFGCGDARLAKNV--KNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAV 186
           +       V D GCG+A++A+ V  K+K+ SFDLV+ +  V +CDMS  P + SS D+ +
Sbjct: 203 QSKPDQQSVFDLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIVI 262

Query: 187 FCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLGFVSA 246
           +CLSLMG N   ++ EARRVLK  G L I+EV SRF         K+F +A+  +GF  +
Sbjct: 263 YCLSLMGTNLYDFIREARRVLKIGGILKIAEVTSRF------VSIKQFCEAITKMGFEQS 322

Query: 247 LKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
            +      F+++ FKK ++  ++ K     +LKPCLYK+R
Sbjct: 323 HRRELTDYFMMMEFKKVEK--VEQKRPYGLKLKPCLYKKR 343

[Close]

BLAST of MS003113.1 vs. ExPASy TrEMBL
Match: A0A6J1C2A0 (Ribosomal RNA-processing protein 8 OS=Momordica charantia OX=3673 GN=LOC111006762 PE=3 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 1.4e-159
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKF+RVSGSSS
Sbjct: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN
Sbjct: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG
Sbjct: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 284

[Close]

BLAST of MS003113.1 vs. ExPASy TrEMBL
Match: A0A6J1K1X6 (Ribosomal RNA-processing protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111489378 PE=3 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.7e-141
Identity = 256/285 (89.82%), Postives = 264/285 (92.63%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRS+RKRKRAKRRG DKNK FTN+I D   PS R DIVVS SS GKK  R SGSSS
Sbjct: 1   MADEGRSNRKRKRAKRRGSDKNKGFTNSIPDVTEPSGR-DIVVSTSSDGKKSRRASGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYLAEARRVLKPRGWLLISEVKSRFDPSNGGADP KF++AVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPNKFVRAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKD-VDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEKI  GKD VDWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKISNGKDIVDWPQLKPCLYKRR 284

[Close]

BLAST of MS003113.1 vs. ExPASy TrEMBL
Match: A0A5A7T472 (Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00030 PE=3 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.8e-141
Identity = 252/284 (88.73%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRSS+KRKRAKRRG DKNKD T N+ D    SS +DIVVS SS GKK +RVSGSSS
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSS-QDIVVSSSSDGKKTQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYFKED++LFD+YHTGYQEQM+HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYLAEARRVLKPRGWLLISEVKSRFDPSNGGADP+KFIKAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEK  +GKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of MS003113.1 vs. ExPASy TrEMBL
Match: A0A1S3C8U7 (Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.8e-141
Identity = 252/284 (88.73%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRSS+KRKRAKRRG DKNKD T N+ D    SS +DIVVS SS GKK +RVSGSSS
Sbjct: 1   MADEGRSSKKRKRAKRRGTDKNKDSTYNLPDATELSS-QDIVVSSSSDGKKTQRVSGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYFKED++LFD+YHTGYQEQM+HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFKEDKLLFDMYHTGYQEQMTHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDS+SV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSASV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYLAEARRVLKPRGWLLISEVKSRFDPSNGGADP+KFIKAVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPQKFIKAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEK  +GKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKTSEGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of MS003113.1 vs. ExPASy TrEMBL
Match: A0A6J1FDA4 (Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111444708 PE=3 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 8.4e-141
Identity = 251/284 (88.38%), Postives = 263/284 (92.61%), Query Frame = 0


Query: 1   MADEGRSSRKRKRAKRRGEDKNKDFTNNIADTARPSSRKDIVVSGSSGGKKFERVSGSSS 60
           MADEGRS++KRKRAKRR  DKNKDFTN+I D   PS  +DIVVS SS GKK  R SGSSS
Sbjct: 1   MADEGRSNKKRKRAKRRRSDKNKDFTNSIPDATEPSG-QDIVVSTSSDGKKSRRASGSSS 60

Query: 61  FLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQPVN 120
           FLDKMRARLSGGHFRM+NEKLYTCTGEEALNYF EDQVLFDVYHTGYQEQM HWPE PVN
Sbjct: 61  FLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVN 120

Query: 121 LIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180
           LIIKWLKEHDPSFIVADFGCGDARL+KNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV
Sbjct: 121 LIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSV 180

Query: 181 DVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVCDLG 240
           DVAVFCLSLMGVNY SYL EARRVLKPRGWLLISEVKSRFDPSNGGADP +F++AVC+LG
Sbjct: 181 DVAVFCLSLMGVNYASYLTEARRVLKPRGWLLISEVKSRFDPSNGGADPNEFVRAVCELG 240

Query: 241 FVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           FVSALKDFSNKMFILLYFKKKDEKI  GKD+DWP+LKPCLYKRR
Sbjct: 241 FVSALKDFSNKMFILLYFKKKDEKISNGKDIDWPQLKPCLYKRR 283

[Close]

BLAST of MS003113.1 vs. TAIR 10
Match: AT5G40530.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 360.5 bits (924), Expect = 1.2e-99
Identity = 183/287 (63.76%), Postives = 218/287 (75.96%), Query Frame = 0


Query: 3   DEGRSSRKRKRAKRRGEDKNKD-----FTNNIADTARPSSRKDIVVSGSSGGKKFERVSG 62
           +E ++SR RKR ++R    +K+        N  +       K+    GSS   K  +   
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPK--- 63

Query: 63  SSSFLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQ 122
            S+FLD +R RLSGG FRM+NEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QMS+WPE 
Sbjct: 64  PSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPEL 123

Query: 123 PVNLIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDS 182
           PVN II WL  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSVIACDMSNT L+S
Sbjct: 124 PVNSIINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLES 183

Query: 183 SSVDVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVC 242
           SSVDVAVFCLSLMG NY SY+ EA RVL+P G LLI+EVKSRFDP+NGGADPK F+KAVC
Sbjct: 184 SSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVC 243

Query: 243 DLGFVSALKDFSNKMFILLYFKKKDEKILKGKDVDWPELKPCLYKRR 285
           DLGF S LKDFSNKMFIL +FKKK++     K + WPELK CLYKRR
Sbjct: 244 DLGFTSVLKDFSNKMFILFHFKKKEQMNSNQKIIKWPELKACLYKRR 287

[Close]

BLAST of MS003113.1 vs. TAIR 10
Match: AT5G40530.2 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 321.6 bits (823), Expect = 6.2e-88
Identity = 171/287 (59.58%), Postives = 203/287 (70.73%), Query Frame = 0


Query: 3   DEGRSSRKRKRAKRRGEDKNKD-----FTNNIADTARPSSRKDIVVSGSSGGKKFERVSG 62
           +E ++SR RKR ++R    +K+        N  +       K+    GSS   K  +   
Sbjct: 4   EENKTSRNRKRKRQRNPKPSKEEPIETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPK--- 63

Query: 63  SSSFLDKMRARLSGGHFRMINEKLYTCTGEEALNYFKEDQVLFDVYHTGYQEQMSHWPEQ 122
            S+FLD +R RLSGG FRM+NEKLYTC+G+EAL+YFKED  +FD+YHTGYQ+QMS+WPE 
Sbjct: 64  PSNFLDALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPEL 123

Query: 123 PVNLIIKWLKEHDPSFIVADFGCGDARLAKNVKNKVFSFDLVSKDPSVIACDMSNTPLDS 182
           PVN II WL  +  S +VADFGCGDAR+AK+VKNKVFSFDLVSK+PSVIACDMSNT L+S
Sbjct: 124 PVNSIINWLLSNSSSLVVADFGCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTSLES 183

Query: 183 SSVDVAVFCLSLMGVNYESYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPKKFIKAVC 242
           SSVDVAVFCLSLMG NY SY+ EA RVL+P G LLI+EVKSRFDP+NGGADPK F+KAVC
Sbjct: 184 SSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGADPKDFVKAVC 243

Query: 243 DLGFVSALK-----------------------DFSNKMFILLYFKKK 262
           DLGF S LK                       DFSNKMFIL +FKKK
Sbjct: 244 DLGFTSVLKVQSFLLLFFISTIRKKLIWFFEQDFSNKMFILFHFKKK 287

The following BLAST results are available for this feature:

BLAST of MS003113.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134543.1	2.8e-159	99.65	ribosomal RNA-processing protein 8 isoform X1 [Momordica charantia]	[more]
XP_038889651.1	2.0e-141	89.08	ribosomal RNA-processing protein 8 [Benincasa hispida]	[more]
XP_022993338.1	3.5e-141	89.82	ribosomal RNA-processing protein 8-like [Cucurbita maxima]	[more]
XP_008458812.1	7.8e-141	88.73	PREDICTED: ribosomal RNA-processing protein 8 isoform X1 [Cucumis melo] >KAA0037...	[more]
XP_022938486.1	1.7e-140	88.38	ribosomal RNA-processing protein 8-like [Cucurbita moschata]	[more]

BLAST of MS003113.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JC0	1.7e-98	63.76	Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 ...	[more]
O43159	6.6e-50	42.14	Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2	[more]
Q9DB85	4.0e-47	42.14	Ribosomal RNA-processing protein 8 OS=Mus musculus OX=10090 GN=Rrp8 PE=1 SV=1	[more]
Q5U4F0	5.2e-47	40.79	Ribosomal RNA-processing protein 8 OS=Rattus norvegicus OX=10116 GN=Rrp8 PE=1 SV...	[more]
O44410	6.8e-47	38.21	Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans OX=6239 GN=T07A9.8 ...	[more]

BLAST of MS003113.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2A0	1.4e-159	99.65	Ribosomal RNA-processing protein 8 OS=Momordica charantia OX=3673 GN=LOC11100676...	[more]
A0A6J1K1X6	1.7e-141	89.82	Ribosomal RNA-processing protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111489378 P...	[more]
A0A5A7T472	3.8e-141	88.73	Ribosomal RNA-processing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C8U7	3.8e-141	88.73	Ribosomal RNA-processing protein 8 OS=Cucumis melo OX=3656 GN=LOC103498109 PE=3 ...	[more]
A0A6J1FDA4	8.4e-141	88.38	Ribosomal RNA-processing protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111444708...	[more]

BLAST of MS003113.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40530.1	1.2e-99	63.76	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]
AT5G40530.2	6.2e-88	59.58	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007823	Ribosomal RNA processing protein 8	PFAM	PF05148	Methyltransf_8	coord: 63..284 e-value: 4.8E-77 score: 258.7
IPR007823	Ribosomal RNA processing protein 8	PANTHER	PTHR12787	UNCHARACTERIZED	coord: 9..284
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 117..284 e-value: 5.4E-56 score: 191.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	CDD	cd02440	AdoMet_MTases	coord: 135..214 e-value: 8.05107E-5 score: 39.3355
IPR042036	Ribosomal RNA-processing protein 8, N-terminal domain	GENE3D	1.10.10.2150		coord: 65..115 e-value: 1.2E-25 score: 91.4
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 100..222

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS003113	MS003113	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS003113.1-cds	MS003113.1-cds-scaffold234:499498..499566	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:499682..499726	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:499801..499915	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:500007..500113	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:500857..500951	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:501085..501199	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:501488..501539	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:501818..501879	CDS
MS003113.1-cds	MS003113.1-cds-scaffold234:501976..502167	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS003113.1	MS003113.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008168	methyltransferase activity