MS002751.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002751.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
Location	scaffold66: 268941 .. 273473 (-)
Sequence length	1062
RNA-Seq Expression	MS002751.1
Synteny	MS002751.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTTGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACAATGCCAGCTCGGGAAGTTCTTGTTGCCCTTGCTGAGAAGTTCAGGTGGGCATTTCAGGAGTAGCCTAATGGGGCTTTTATAGAATTTGAATTGTCCTTTTTGTGTGCGTGTGTGTGTGTGTGTTTTTTTTTGAAAGGCAGGATCGAATTTTGAAAAGAATATTCTTTTTATGTTGTTGTAGTGAATCAATAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTATGGTGGTTCTGTTCTGTACTAGTACTAGACCTTGATATAGTGTGTAGTGGTATTTTGCTAATTATTATGATTGTTATTTCGTAGGTTTGGAATTGGTTCCAAAATAGACGTTATGCTATCAGAGCAAAGTCAACCAAGGCTCCTGGAAAGTTAGCAGTTTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCACAATCCATAGTTGTTCCTGCTCCTGCACCAGTAGGTATTAAAGAAAACATTGTTATGTTTTATAAGTTTAAAACATTTCATTTTCTTATCCTGTTTTTTCTTCTTTATTATCTGTTTGGTGTCAGCTTCTTTTTTACAAAATTTTACTCTAGTAGTAGAATGGTATTCATGTTAAAGCCTGTGTCTGGGTTTCCATCGTGAAGATTTTTGAAACTTTTCCTCTTTTGACAAAGCTGTGGGGAGGTATATGTGAAATCTTGGGAGCTTTTATAGCCTTTGCCTTTGTATGGGGAGGGAGGGAGGGGGGTAGTTTTTAACTAATCTTCATTATAGGCTAGCAATTAGGTGTTTATTGTGAGTATTCTTTTTTTAATCTACTTTCTCATTTTTGGAACAGATTGTTCATGGCATATGCTTTAGGCAGCAAGTTATGGTGGTTTTGGAAAACCTTATTCCACTATTCTTGTTGTTAATTTCTCCATGATATTTTGTCGTTTCTTTTTTCCTATAAATATTGGGTTGGCTATTTTGTTTCCTATGCCCAATAATTTGTAGCATGATATGGTGTGAAAAGCTAAGAAGCATGGACACTATAGTTTGGATAGCATGCCTGTTTTCAATGCGTATCGAATCATACATGAACATGTGCTGAACACTCATTGAGCATTTGTTTATTTATTCGTTTTGAAAAAGGGAAACAACAAACTCTTTTTAAGCATATAAGTAGACAGGCGTTGTTGATTTTAGATTTACTTTTCTATAATATATTAACTCATAGAAACATGTTAAGTTTGTTTTCAGTTTTATTTATTTATTTATTTATATTTTTTTAATATTTTGATATAAGACATTTGTATCACTAAAACTAAAAAAACAATAGCTAAGTACTCAAACCACGTACTTTATTGATGCCAACATCGTAATTTTTTTAAACCAACATCTGTGCCAAATTCCAGGCTCTGTGAAGGGTGCTCCGGACAATCCATTATCGGAGTTTGAAGCTAAATCTGCTAGGGATGGTGCATGGTTAGTATAGCTTGTCTTCAAATGTAGTAATAGTGGTGTGAAATGTGAATTAGCCGGTCTTCATGCTTTAGGATGATAAACTTCTTCATCATAGGTGTAGATGAGCAATTGGAATTTCGTACATACACGTGAATACACCTGATACAAGAAATTAACAATATATTCTTTTTAACTGTTCATATGTTCAGGTATGACGTTGCTACCTTCTTATCCCATAAATCTGTGGAAAGTGGTGACCCGGTAATTTGCACTCATTCCCTTCCCTTGCACGCAAATCATTATTTAAGGAAGCATTATGTTCCCTTTCTTCCCCCTTCAATCTATTTGTTGCTCTCTTTTTCACACTTTAGTTATTTGAGCTTTTATCATAAAAATGAACATGTAATTATTAAGCCAATTAGTTCTTGAATGGCCACTTCCACTTTCTCCATTTTTAGGAAAACATTGTAAGAAGTGGTCATACTCCAAGTAAAAAAAATTTCCTGTCTCATATCCTGATGCTTGGGCATAATGTCAGAGGCCTTTGGATCCAATAGTGTGGTCACAAATTCAAAACCTTTTGGATTACATTTCTCAATGTTACCAACTTCTCTTAGTCTTTTTATGTTGTTTGGTAAGGTATTGATCCTGGTTTCAAACTCAATAGCCTGAAATTAGAATTATTGGGATTCTGGGTGTTACGAAGAATGAATTGTAACATTTACATTGTCTATTTTGACTTGTGACAGTTAGAATTACCCTGTATTTGTCTTCCCCCAAACCTTTTCTCCCTCCCTATTTTCGGAGGTTTTATTGACTATGCAGAAGTATTTAAGGTTAAGCAACAACACCTTATCTGACTGATATTTTGGCCATTCTCAAATTGGTTCAAGATCTTATTTGATTGCAATTCAAAATTGTGGCTCTCATTTAGAAAAGAAATCCTTGTTTTGATTTGCATGCTTTTGTCTGTCTCCCCGTATTACCTAAAAATTGTTGTTTGTCAGGAAGTATTAGTTAGATTTGCTGGTTTTGGATCGGAGGAAGATGAGTGGGTTAATATCCGAAGGAACATTAGACCTCGTTCTCTTCCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGTAAAAGTAAAACCTGGGCTTTGCATCTCCTTCGTGGAGCAATCAATTCAGTTTATCTCTTTACCTGATCTATATGTTCGACATATAATTCATGACTACCTTGTAAAACCACTCCCCTCCAAGAGGGCATGAAACGGTCTATGACATTCTCACTGAAAAATTTAACAACACATTCTACAAGTTGTTATAGAATAACATCTTTTATTAGAAATTATTGGGAACTATTTCTGATCTTCAAAACTTTCAGGAGGGTAAAGAGCAAGCACTTTACTTTGATGCCCACGTGCTCGATACACAGAGAAGAAGACATGATGTACGAGGTTGTCGCTGCAGATTTTTGGTCCGTTATGATCATGATCAATCTGAGGTGTGTGAAGTTCTCAAGTTTTGTTGGGTTCTTTTGGTTGTTTGTATTCGCACTCCTAGCCCCATCATCCAACCTGGGGGCAGGGGGATTGATGCAATGAACACAAACATCAATATAATCATTGGTTTTTTGTGCTGACATTGTCTGTTTTGCATTGCATTAGAAATGAATCTCCCTTTTTTTAGTATTATATTGTTTTCATTCTTGTTAATTTCACACGAACTGAAGACTTCAGCTTTGAAGTGGGGAGAATTTGGGAATTTAGAGTGTTGTTAATGGCTCTGCTGCTGTGAGTTCTGTTTCCAGTTCAAATGAAAATAATCCTCCTCTCTTTCTTTGGAGTTGTAGGGACCAGGCTCGTAGTTGGTTTTCTTCAGGTTGATAGGTTCAATGGTTGCTTAGTAATAAGTGGGAATTTTGTTATTTCATGCTTAAATATAAACAAAACAAACAGTTAAATTTAAAGTTCTATCTCATATCCTTAAGGATAGAATTATAATTCAGATGTCGGTTAGATTTCTGCTGGGAGTGGAGAATAATAGTTACAGATGAATAACCTTTCGTAATAGGTAGAAATTCCAGAAAAGTTATGATGTGCTTAATACCAACAAACTTGGAGGAACCTTCCAATATCATCAGGCCAAATATATTTGTTATCTTTTATGTTGGAGGAGTATATGACAATACACAAGCTCTCATAGTATCTCTTTTAGGTATGTAAATGATGATATTTTTTTATTTTTTTTATTTTTTTATTTTTGGATAAGAAACTGGGATAAATTTCATTATCAAAAGAAGCTCATACAAAAAGGGAATGAGCTTAATCCCATATGGCCACCGGTTACGAAAAAGAGATGTCAGTAGGCAGTGATATGTACAAAGGTATAGTTACAAAATCTTTAGACAAATGATGATAGCTAAGTTTTTTTTTTCCTCTGATTTTTGTTAATTGATCGATCGCAAATTAATCTTCTCATGTAGAATTTAGCTGTGTATTTGATTTGTTTAACTTCCTCTGCTAAACAATTTCCCCATTTTGCAAACAGAACACATTGTGATATTAACATAAACGTTTGATTTAATCAGGCATGGAGCTTTGTTTGGGATTTTACAATTGACTTGGTTTGCTCTAAATAAATGTTAGGAAATTGTCCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTATAGGCTGCAACAGCTTCATGCTGTAAATGAAGCGGCATCCATGGAGCCCCCAAAGTCTGGCATGGATTCTGTACTGCTCAGCGGTCCAAGGCTAAATTTTGAGGGAACACAAAAGCCACTCGGCAAGGATGCAACCATGGTTGCACCAAATGCAAATTTGAATGTAAACGTCCAAGCCCAAACTATTACTCAGGAAGTAAGGAATATCGAAACTAGCAGCACTCCAATCTCATTCAACTCTGGTAATCCCGCAGGTAGCTCTGCTTTCTTGAGTGGTATCGCGACGACCTCTGTTTCTGGTGGGTTGGGAGACAATGTGTCTGATGGGAAGTTACTTAGT

mRNA sequence

AAGGTTGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACAATGCCAGCTCGGGAAGTTCTTGTTGCCCTTGCTGAGAAGTTCAGTGAATCAATAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGACGTTATGCTATCAGAGCAAAGTCAACCAAGGCTCCTGGAAAGTTAGCAGTTTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCACAATCCATAGTTGTTCCTGCTCCTGCACCAGTAGGCTCTGTGAAGGGTGCTCCGGACAATCCATTATCGGAGTTTGAAGCTAAATCTGCTAGGGATGGTGCATGGTATGACGTTGCTACCTTCTTATCCCATAAATCTGTGGAAAGTGGTGACCCGGAAGTATTAGTTAGATTTGCTGGTTTTGGATCGGAGGAAGATGAGTGGGTTAATATCCGAAGGAACATTAGACCTCGTTCTCTTCCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAAGCACTTTACTTTGATGCCCACGTGCTCGATACACAGAGAAGAAGACATGATGTACGAGGTTGTCGCTGCAGATTTTTGGTCCGTTATGATCATGATCAATCTGAGGAAATTGTCCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTATAGGCTGCAACAGCTTCATGCTGTAAATGAAGCGGCATCCATGGAGCCCCCAAAGTCTGGCATGGATTCTGTACTGCTCAGCGGTCCAAGGCTAAATTTTGAGGGAACACAAAAGCCACTCGGCAAGGATGCAACCATGGTTGCACCAAATGCAAATTTGAATGTAAACGTCCAAGCCCAAACTATTACTCAGGAAGTAAGGAATATCGAAACTAGCAGCACTCCAATCTCATTCAACTCTGGTAATCCCGCAGGTAGCTCTGCTTTCTTGAGTGGTATCGCGACGACCTCTGTTTCTGGTGGGTTGGGAGACAATGTGTCTGATGGGAAGTTACTTAGT

Coding sequence (CDS)

AAGGTTGCGGAGATGGAAGCTATATTGCAAGGACACAATAATACAATGCCAGCTCGGGAAGTTCTTGTTGCCCTTGCTGAGAAGTTCAGTGAATCAATAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGACGTTATGCTATCAGAGCAAAGTCAACCAAGGCTCCTGGAAAGTTAGCAGTTTCTCCAATTGTCCAAATTGAGTCAACTCCCGTGAGAAATGTGCCACAATCCATAGTTGTTCCTGCTCCTGCACCAGTAGGCTCTGTGAAGGGTGCTCCGGACAATCCATTATCGGAGTTTGAAGCTAAATCTGCTAGGGATGGTGCATGGTATGACGTTGCTACCTTCTTATCCCATAAATCTGTGGAAAGTGGTGACCCGGAAGTATTAGTTAGATTTGCTGGTTTTGGATCGGAGGAAGATGAGTGGGTTAATATCCGAAGGAACATTAGACCTCGTTCTCTTCCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAAGCACTTTACTTTGATGCCCACGTGCTCGATACACAGAGAAGAAGACATGATGTACGAGGTTGTCGCTGCAGATTTTTGGTCCGTTATGATCATGATCAATCTGAGGAAATTGTCCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTATAGGCTGCAACAGCTTCATGCTGTAAATGAAGCGGCATCCATGGAGCCCCCAAAGTCTGGCATGGATTCTGTACTGCTCAGCGGTCCAAGGCTAAATTTTGAGGGAACACAAAAGCCACTCGGCAAGGATGCAACCATGGTTGCACCAAATGCAAATTTGAATGTAAACGTCCAAGCCCAAACTATTACTCAGGAAGTAAGGAATATCGAAACTAGCAGCACTCCAATCTCATTCAACTCTGGTAATCCCGCAGGTAGCTCTGCTTTCTTGAGTGGTATCGCGACGACCTCTGTTTCTGGTGGGTTGGGAGACAATGTGTCTGATGGGAAGTTACTTAGT

Protein sequence

KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQAQTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS

Homology

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BLAST of MS002751.1 vs. NCBI nr
Match: XP_022142790.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Momordica charantia])

HSP 1 Score: 695.7 bits (1794), Expect = 2.1e-196
Identity = 353/354 (99.72%), Postives = 354/354 (100.00%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW
Sbjct: 78  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA
Sbjct: 258 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 317

Query: 301 QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS 355
           QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS
Sbjct: 318 QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS 371

[Close]

BLAST of MS002751.1 vs. NCBI nr
Match: XP_038878066.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 623.2 bits (1606), Expect = 1.3e-174
Identity = 316/365 (86.58%), Postives = 330/365 (90.41%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEMEAILQGHNNTMPAREVLVALAEKFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMEAILQGHNNTMPAREVLVALAEKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           +TKAPGKLAVSPIVQIESTPVRNVPQ+IVVPAP PVGS KGAP+NPLSEFEAKS RDGAW
Sbjct: 78  TTKAPGKLAVSPIVQIESTPVRNVPQTIVVPAPVPVGSAKGAPENPLSEFEAKSGRDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAAS+EP KS MDSVLLSG R+NFE TQKPL KD T+V PNAN N+NV A
Sbjct: 258 YRLQQLHAVNEAASIEPSKSSMDSVLLSGQRINFETTQKPLNKDTTLVIPNANANINVHA 317

Query: 301 QTITQEVRNIETS-----------STPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSD 355
           QT TQE RN ET+           S P +FNSGNPAG SAF  GI T +VSGG  DNVSD
Sbjct: 318 QTNTQEARNTETNSAPTTFNSGIHSAPTTFNSGNPAGGSAFSVGIVTNTVSGGSADNVSD 377

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BLAST of MS002751.1 vs. NCBI nr
Match: KAE8650545.1 (hypothetical protein Csa_011086 [Cucumis sativus])

HSP 1 Score: 618.6 bits (1594), Expect = 3.3e-173
Identity = 308/354 (87.01%), Postives = 329/354 (92.94%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEMEAILQGHNNTMPAREVLVALA+KFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMEAILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           ++KAPGKLAVSP+VQIESTPVRNVPQ++VVPAPAPVGS KGAP+NPLSEFEAKS RDGAW
Sbjct: 78  TSKAPGKLAVSPVVQIESTPVRNVPQTVVVPAPAPVGSAKGAPENPLSEFEAKSGRDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAAS+EP KSGMDSVLLSG R+NFE +Q PL KDA +V PNAN ++N  A
Sbjct: 258 YRLQQLHAVNEAASIEPSKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHA 317

Query: 301 QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS 355
           QT TQE RN ET++ P +FNS N AGSSAF SGI T +VS G  DNVSDGKLLS
Sbjct: 318 QTSTQEARNTETNTAPTTFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 371

[Close]

BLAST of MS002751.1 vs. NCBI nr
Match: XP_038878067.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 617.8 bits (1592), Expect = 5.6e-173
Identity = 313/361 (86.70%), Postives = 326/361 (90.30%), Query Frame = 0


Query: 5   MEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKA 64
           MEAILQGHNNTMPAREVLVALAEKFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK+TKA
Sbjct: 1   MEAILQGHNNTMPAREVLVALAEKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKA 60

Query: 65  PGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAWYDVA 124
           PGKLAVSPIVQIESTPVRNVPQ+IVVPAP PVGS KGAP+NPLSEFEAKS RDGAWYDVA
Sbjct: 61  PGKLAVSPIVQIESTPVRNVPQTIVVPAPVPVGSAKGAPENPLSEFEAKSGRDGAWYDVA 120

Query: 125 TFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 184
           TFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF
Sbjct: 121 TFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 180

Query: 185 QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 244
           QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ
Sbjct: 181 QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 240

Query: 245 QLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQAQTIT 304
           QLHAVNEAAS+EP KS MDSVLLSG R+NFE TQKPL KD T+V PNAN N+NV AQT T
Sbjct: 241 QLHAVNEAASIEPSKSSMDSVLLSGQRINFETTQKPLNKDTTLVIPNANANINVHAQTNT 300

Query: 305 QEVRNIETS-----------STPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLL 355
           QE RN ET+           S P +FNSGNPAG SAF  GI T +VSGG  DNVSDGKLL
Sbjct: 301 QEARNTETNSAPTTFNSGIHSAPTTFNSGNPAGGSAFSVGIVTNTVSGGSADNVSDGKLL 360

[Close]

BLAST of MS002751.1 vs. NCBI nr
Match: XP_031739398.1 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Cucumis sativus])

HSP 1 Score: 613.2 bits (1580), Expect = 1.4e-171
Identity = 305/350 (87.14%), Postives = 325/350 (92.86%), Query Frame = 0


Query: 5   MEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKA 64
           MEAILQGHNNTMPAREVLVALA+KFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK++KA
Sbjct: 1   MEAILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKA 60

Query: 65  PGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAWYDVA 124
           PGKLAVSP+VQIESTPVRNVPQ++VVPAPAPVGS KGAP+NPLSEFEAKS RDGAWYDVA
Sbjct: 61  PGKLAVSPVVQIESTPVRNVPQTVVVPAPAPVGSAKGAPENPLSEFEAKSGRDGAWYDVA 120

Query: 125 TFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 184
           TFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF
Sbjct: 121 TFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 180

Query: 185 QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 244
           QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ
Sbjct: 181 QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 240

Query: 245 QLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQAQTIT 304
           QLHAVNEAAS+EP KSGMDSVLLSG R+NFE +Q PL KDA +V PNAN ++N  AQT T
Sbjct: 241 QLHAVNEAASIEPSKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHAQTST 300

Query: 305 QEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS 355
           QE RN ET++ P +FNS N AGSSAF SGI T +VS G  DNVSDGKLLS
Sbjct: 301 QEARNTETNTAPTTFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 350

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BLAST of MS002751.1 vs. ExPASy Swiss-Prot
Match: Q8RWJ7 (Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE=2 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-96
Identity = 191/323 (59.13%), Postives = 228/323 (70.59%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +V EMEAIL  HN  MP R +L ALA+KFSES ERKGK+ VQ KQ+WNWFQNRRYA+RA+
Sbjct: 18  EVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRAR 77

Query: 61  STKAPGKLAVSPIVQIE-STPVRNVPQSIVVP------------APAPVGS-----VKGA 120
             KAPGKL VS + +++    +R+V Q + VP             PAP GS     ++  
Sbjct: 78  GNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSG 137

Query: 121 PDNPLSEFEAKSARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRP 180
            DN   EFEAKSARDGAWYDV  FL+H+++E GDPEV VRFAGF  EEDEW+N+++++R 
Sbjct: 138 SDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQ 197

Query: 181 RSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHD 240
           RSLPCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HD
Sbjct: 198 RSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHD 257

Query: 241 QSEEIVQLRKICRRPETDYRLQQLH-AVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPL 294
           QSEEIV LRKICRRPETDYRLQQLH AVN+ A+    +          P L+  G   P+
Sbjct: 258 QSEEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTP-LSLPGATVPI 317

[Close]

BLAST of MS002751.1 vs. ExPASy Swiss-Prot
Match: Q9XI47 (Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=SHH1 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-42
Identity = 103/245 (42.04%), Postives = 147/245 (60.00%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNR-RYAIRA 60
           ++ +ME + +   +    ++    +A  FS S+ R GK ++  KQV  WFQ + ++  + 
Sbjct: 18  EIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQP 77

Query: 61  KSTKAPGKLAVSPIVQIE-----STPVRNVPQSIVVPAPAPVGSVKG-APDNPLSEFEAK 120
           KS   P     SP +QI      S+   N   +  V     V + KG A D     FEAK
Sbjct: 78  KSKTLP-----SPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAK 137

Query: 121 SARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECV 180
           SARD AWYDV++FL+++ + +G+ EV VRF+GF +  DEWVN++ ++R RS+P E SEC 
Sbjct: 138 SARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECG 197

Query: 181 AVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKI 239
            V  GDL+LCFQE ++QALY D HVL+ +R  HD   C C FLVRY+ D +EE + L +I
Sbjct: 198 RVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERI 257

[Close]

BLAST of MS002751.1 vs. ExPASy TrEMBL
Match: A0A6J1CLX5 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012828 PE=4 SV=1)

HSP 1 Score: 695.7 bits (1794), Expect = 1.0e-196
Identity = 353/354 (99.72%), Postives = 354/354 (100.00%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW
Sbjct: 78  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA
Sbjct: 258 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 317

Query: 301 QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS 355
           QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS
Sbjct: 318 QTITQEVRNIETSSTPISFNSGNPAGSSAFLSGIATTSVSGGLGDNVSDGKLLS 371

[Close]

BLAST of MS002751.1 vs. ExPASy TrEMBL
Match: A0A5A7UUV7 (SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00380 PE=4 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.8e-170
Identity = 306/365 (83.84%), Postives = 328/365 (89.86%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEME ILQGHNNTMPAREVLVALA+KFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMETILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           ++KAPGKLAVSP+VQIESTPVRNVPQ++VVPAP PVG+ K AP+NPLSEFEAKS RDGAW
Sbjct: 78  TSKAPGKLAVSPVVQIESTPVRNVPQTVVVPAPTPVGTAKSAPENPLSEFEAKSGRDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAAS+EP KSGMDSVLLSG R+NFE  Q PL KDA +V PNAN ++N  A
Sbjct: 258 YRLQQLHAVNEAASIEPSKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHA 317

Query: 301 QTITQEVRNIETSSTPISFNSGNP-----------AGSSAFLSGIATTSVSGGLGDNVSD 355
           QT TQE RN ET++ PI+F+SGN            AGSSAF SGI T +VSGG  DNVSD
Sbjct: 318 QTSTQEARNTETNTAPITFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSD 377

[Close]

BLAST of MS002751.1 vs. ExPASy TrEMBL
Match: A0A1S3C274 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.8e-170
Identity = 306/365 (83.84%), Postives = 328/365 (89.86%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEME ILQGHNNTMPAREVLVALA+KFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMETILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           ++KAPGKLAVSP+VQIESTPVRNVPQ++VVPAP PVG+ K AP+NPLSEFEAKS RDGAW
Sbjct: 78  TSKAPGKLAVSPVVQIESTPVRNVPQTVVVPAPTPVGTAKSAPENPLSEFEAKSGRDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAAS+EP KSGMDSVLLSG R+NFE  Q PL KDA +V PNAN ++N  A
Sbjct: 258 YRLQQLHAVNEAASIEPSKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHA 317

Query: 301 QTITQEVRNIETSSTPISFNSGNP-----------AGSSAFLSGIATTSVSGGLGDNVSD 355
           QT TQE RN ET++ PI+F+SGN            AGSSAF SGI T +VSGG  DNVSD
Sbjct: 318 QTSTQEARNTETNTAPITFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSD 377

[Close]

BLAST of MS002751.1 vs. ExPASy TrEMBL
Match: A0A5D3CH38 (Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001130 PE=4 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 2.4e-169
Identity = 305/365 (83.56%), Postives = 327/365 (89.59%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +VAEME ILQGHNNTMPAREVLVALA+KFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK
Sbjct: 18  EVAEMETILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAK 77

Query: 61  STKAPGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAW 120
           ++KAPGKLAVSP+VQIESTPVRNVPQ++VVPAP PVG+ K AP+NPLSEFEAKS RDGAW
Sbjct: 78  TSKAPGKLAVSPVVQIESTPVRNVPQTVVVPAPTPVGTAKSAPENPLSEFEAKSGRDGAW 137

Query: 121 YDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 180
           YDVATFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL
Sbjct: 138 YDVATFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDL 197

Query: 181 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETD 240
           ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDH+QSEEIVQLRKICRRPETD
Sbjct: 198 ILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHNQSEEIVQLRKICRRPETD 257

Query: 241 YRLQQLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQA 300
           YRLQQLHAVNEAAS+EP KSGMDSVLLSG R+NFE  Q PL KDA +V PNAN + N  A
Sbjct: 258 YRLQQLHAVNEAASIEPSKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHTNAHA 317

Query: 301 QTITQEVRNIETSSTPISFNSGNP-----------AGSSAFLSGIATTSVSGGLGDNVSD 355
           QT TQE RN ET++ PI+F+SGN            AGSSAF SGI T +VSGG  DNVSD
Sbjct: 318 QTSTQEARNTETNTAPITFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSD 377

[Close]

BLAST of MS002751.1 vs. ExPASy TrEMBL
Match: A0A1S3C2X6 (protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496064 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.2e-168
Identity = 303/361 (83.93%), Postives = 324/361 (89.75%), Query Frame = 0


Query: 5   MEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAKSTKA 64
           ME ILQGHNNTMPAREVLVALA+KFSES+ERKGKIAVQMKQVWNWFQNRRYAIRAK++KA
Sbjct: 1   METILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKA 60

Query: 65  PGKLAVSPIVQIESTPVRNVPQSIVVPAPAPVGSVKGAPDNPLSEFEAKSARDGAWYDVA 124
           PGKLAVSP+VQIESTPVRNVPQ++VVPAP PVG+ K AP+NPLSEFEAKS RDGAWYDVA
Sbjct: 61  PGKLAVSPVVQIESTPVRNVPQTVVVPAPTPVGTAKSAPENPLSEFEAKSGRDGAWYDVA 120

Query: 125 TFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 184
           TFLSH+SVESGDPEVLVRF+GFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF
Sbjct: 121 TFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 180

Query: 185 QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 244
           QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ
Sbjct: 181 QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 240

Query: 245 QLHAVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPLGKDATMVAPNANLNVNVQAQTIT 304
           QLHAVNEAAS+EP KSGMDSVLLSG R+NFE  Q PL KDA +V PNAN ++N  AQT T
Sbjct: 241 QLHAVNEAASIEPSKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTST 300

Query: 305 QEVRNIETSSTPISFNSGNP-----------AGSSAFLSGIATTSVSGGLGDNVSDGKLL 355
           QE RN ET++ PI+F+SGN            AGSSAF SGI T +VSGG  DNVSDGKLL
Sbjct: 301 QEARNTETNTAPITFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLL 360

[Close]

BLAST of MS002751.1 vs. TAIR 10
Match: AT3G18380.1 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 354.8 bits (909), Expect = 8.3e-98
Identity = 191/323 (59.13%), Postives = 228/323 (70.59%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +V EMEAIL  HN  MP R +L ALA+KFSES ERKGK+ VQ KQ+WNWFQNRRYA+RA+
Sbjct: 18  EVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRAR 77

Query: 61  STKAPGKLAVSPIVQIE-STPVRNVPQSIVVP------------APAPVGS-----VKGA 120
             KAPGKL VS + +++    +R+V Q + VP             PAP GS     ++  
Sbjct: 78  GNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSG 137

Query: 121 PDNPLSEFEAKSARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRP 180
            DN   EFEAKSARDGAWYDV  FL+H+++E GDPEV VRFAGF  EEDEW+N+++++R 
Sbjct: 138 SDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQ 197

Query: 181 RSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHD 240
           RSLPCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HD
Sbjct: 198 RSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHD 257

Query: 241 QSEEIVQLRKICRRPETDYRLQQLH-AVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPL 294
           QSEEIV LRKICRRPETDYRLQQLH AVN+ A+    +          P L+  G   P+
Sbjct: 258 QSEEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTP-LSLPGATVPI 317

[Close]

BLAST of MS002751.1 vs. TAIR 10
Match: AT3G18380.2 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 350.1 bits (897), Expect = 2.0e-96
Identity = 191/324 (58.95%), Postives = 228/324 (70.37%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +V EMEAIL  HN  MP R +L ALA+KFSES ERKGK+ VQ KQ+WNWFQNRRYA+RA+
Sbjct: 18  EVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRAR 77

Query: 61  STKAPGKLAVSPIVQIE-STPVRNVPQSIVVP------------APAPVGS-----VKGA 120
             KAPGKL VS + +++    +R+V Q + VP             PAP GS     ++  
Sbjct: 78  GNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSG 137

Query: 121 PDNPLSEFEAKSARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRP 180
            DN   EFEAKSARDGAWYDV  FL+H+++E GDPEV VRFAGF  EEDEW+N+++++R 
Sbjct: 138 SDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQ 197

Query: 181 RSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHD 240
           RSLPCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HD
Sbjct: 198 RSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHD 257

Query: 241 QSE-EIVQLRKICRRPETDYRLQQLH-AVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKP 294
           QSE EIV LRKICRRPETDYRLQQLH AVN+ A+    +          P L+  G   P
Sbjct: 258 QSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTP-LSLPGATVP 317

[Close]

BLAST of MS002751.1 vs. TAIR 10
Match: AT3G18380.3 (sequence-specific DNA binding transcription factors;sequence-specific DNA binding )

HSP 1 Score: 350.1 bits (897), Expect = 2.0e-96
Identity = 189/321 (58.88%), Postives = 227/321 (70.72%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNRRYAIRAK 60
           +V EMEAIL  HN  MP R +L ALA+KFSES ERKGK+ VQ KQ+WNWFQNRRYA+RA+
Sbjct: 18  EVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRAR 77

Query: 61  STKAPGKLAVSPIVQIE-STPVRNVPQSIVV--------------PAPAPVGSVKGAPDN 120
             KAPGKL VS + +++    +R+V Q + V              PAP+  G ++   DN
Sbjct: 78  GNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSVPGVMRSGSDN 137

Query: 121 PLSEFEAKSARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSL 180
              EFEAKSARDGAWYDV  FL+H+++E GDPEV VRFAGF  EEDEW+N+++++R RSL
Sbjct: 138 SYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSL 197

Query: 181 PCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSE 240
           PCE+SECVAVL GDL+LCFQEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSE
Sbjct: 198 PCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSE 257

Query: 241 -EIVQLRKICRRPETDYRLQQLH-AVNEAASMEPPKSGMDSVLLSGPRLNFEGTQKPL-- 294
            EIV LRKICRRPETDYRLQQLH AVN+ A+    +          P L+  G   P+  
Sbjct: 258 QEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQIPALDAAAKTP-LSLPGATVPIVA 317

[Close]

BLAST of MS002751.1 vs. TAIR 10
Match: AT1G15215.2 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 175.3 bits (443), Expect = 9.0e-44
Identity = 103/245 (42.04%), Postives = 147/245 (60.00%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNR-RYAIRA 60
           ++ +ME + +   +    ++    +A  FS S+ R GK ++  KQV  WFQ + ++  + 
Sbjct: 18  EIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQP 77

Query: 61  KSTKAPGKLAVSPIVQIE-----STPVRNVPQSIVVPAPAPVGSVKG-APDNPLSEFEAK 120
           KS   P     SP +QI      S+   N   +  V     V + KG A D     FEAK
Sbjct: 78  KSKTLP-----SPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAK 137

Query: 121 SARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECV 180
           SARD AWYDV++FL+++ + +G+ EV VRF+GF +  DEWVN++ ++R RS+P E SEC 
Sbjct: 138 SARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECG 197

Query: 181 AVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKI 239
            V  GDL+LCFQE ++QALY D HVL+ +R  HD   C C FLVRY+ D +EE + L +I
Sbjct: 198 RVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERI 257

[Close]

BLAST of MS002751.1 vs. TAIR 10
Match: AT1G15215.3 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-39
Identity = 95/232 (40.95%), Postives = 137/232 (59.05%), Query Frame = 0


Query: 1   KVAEMEAILQGHNNTMPAREVLVALAEKFSESIERKGKIAVQMKQVWNWFQNR-RYAIRA 60
           ++ +ME + +   +    ++    +A  FS S+ R GK ++  KQV  WFQ + ++  + 
Sbjct: 18  EIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQP 77

Query: 61  KSTKAPGKLAVSPIVQIE-----STPVRNVPQSIVVPAPAPVGSVKG-APDNPLSEFEAK 120
           KS   P     SP +QI      S+   N   +  V     V + KG A D     FEAK
Sbjct: 78  KSKTLP-----SPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAK 137

Query: 121 SARDGAWYDVATFLSHKSVESGDPEVLVRFAGFGSEEDEWVNIRRNIRPRSLPCESSECV 180
           SARD AWYDV++FL+++ + +G+ EV VRF+GF +  DEWVN++ ++R RS+P E SEC 
Sbjct: 138 SARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECG 197

Query: 181 AVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSE 226
            V  GDL+LCFQE ++QALY D HVL+ +R  HD   C C FLVRY+ D +E
Sbjct: 198 RVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTE 244

The following BLAST results are available for this feature:

BLAST of MS002751.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142790.1	2.1e-196	99.72	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Momordica charantia]	[more]
XP_038878066.1	1.3e-174	86.58	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 [Benincasa hispida]	[more]
KAE8650545.1	3.3e-173	87.01	hypothetical protein Csa_011086 [Cucumis sativus]	[more]
XP_038878067.1	5.6e-173	86.70	protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2 [Benincasa hispida]	[more]
XP_031739398.1	1.4e-171	87.14	protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Cucumis sativus]	[more]

BLAST of MS002751.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWJ7	1.2e-96	59.13	Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE...	[more]
Q9XI47	1.3e-42	42.04	Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=SHH1 PE...	[more]

BLAST of MS002751.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLX5	1.0e-196	99.72	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Momordica charantia OX=3673 ...	[more]
A0A5A7UUV7	2.8e-170	83.84	SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C274	2.8e-170	83.84	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3CH38	2.4e-169	83.56	Protein SAWADEE HOMEODOMAIN-like protein 2 isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A1S3C2X6	1.2e-168	83.93	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of MS002751.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18380.1	8.3e-98	59.13	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT3G18380.2	2.0e-96	58.95	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT3G18380.3	2.0e-96	58.88	sequence-specific DNA binding transcription factors;sequence-specific DNA bindin...	[more]
AT1G15215.2	9.0e-44	42.04	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT1G15215.3	5.1e-39	40.95	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 107..166 e-value: 9.4E-30 score: 104.6
None	No IPR available	GENE3D	2.30.30.140		coord: 167..239 e-value: 9.4E-38 score: 129.8
None	No IPR available	PANTHER	PTHR33827:SF7	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 2..310
IPR032001	SAWADEE domain	PFAM	PF16719	SAWADEE	coord: 108..234 e-value: 5.1E-40 score: 136.7
IPR039276	Protein SAWADEE HOMEODOMAIN HOMOLOG 1/2	PANTHER	PTHR33827	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 2..310
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 1..60 score: 9.685213
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 2..58 e-value: 0.00663468 score: 32.6005
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 5..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002751	MS002751	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002751.1-cds	MS002751.1-cds-scaffold66:268941..269327	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:270472..270591	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:270839..270982	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:271729..271780	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:271969..272038	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:272961..273114	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:273202..273247	CDS
MS002751.1-cds	MS002751.1-cds-scaffold66:273385..273473	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002751.1	MS002751.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding