MS002743.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002743.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	signaling peptide TAXIMIN 2-like
Location	scaffold66: 197096 .. 197798 (+)
Sequence length	210
RNA-Seq Expression	MS002743.1
Synteny	MS002743.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAGGCCATTAGGGTTCTTGATTGGCCTTCCTTTTGCCTTTGTTTCCTTGCTTCTCTCCCTCGTTGGTGCTATTCTTTGGATCTTTTGGTGAGTTTTCTCTCTTTTCTTTTCTTCGTTCCTTTCGTAATAAACACTAAAAGCCCGTTTGATAACATTCATGTTTCTTGACTCTTACTATCCATGAATTCAAGTATGATAAAAAAAACCATCTTTTTTTAAACAAATTGGAGAACAGGAAAGAAGAAACTTGTTTTGGTTGTTTCTAAACTTTCTATACAATTTTGATAATGTTTCCAAAAAACGAGAAACAAGAAACATAGTTAGTTGCAAAAAACTTAAATTTTTTAAGAAAATTGGGAGCGAGAATGTTATACAAAACGGGCCCTAAATTACCCATCTTTCCAATTCTCATTTTCGACGTGGAAATCATCAAATTCATCTGTCTTCTAAAAAATTCTCGTCGTTGAGTTTTATGTTTGTCTGTTTGTTTTTGCAGAAAATAGTTTTCCAAATTGCTTTAATTTATTGAAAGATGAATTGATTTATTAATGATTGGTGTATGATTTTGATGATTGGGTAGGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTATGTTTTGCAGTACTTACAGATTTGGCAATCAGCCTTGTGAAGCTTCCCATCGACATAATGGAATGGTTCATTGATTTGATTCCTTTT

mRNA sequence

TGCAGGCCATTAGGGTTCTTGATTGGCCTTCCTTTTGCCTTTGTTTCCTTGCTTCTCTCCCTCGTTGGTGCTATTCTTTGGATCTTTTGGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTATGTTTTGCAGTACTTACAGATTTGGCAATCAGCCTTGTGAAGCTTCCCATCGACATAATGGAATGGTTCATTGATTTGATTCCTTTT

Coding sequence (CDS)

TGCAGGCCATTAGGGTTCTTGATTGGCCTTCCTTTTGCCTTTGTTTCCTTGCTTCTCTCCCTCGTTGGTGCTATTCTTTGGATCTTTTGGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTATGTTTTGCAGTACTTACAGATTTGGCAATCAGCCTTGTGAAGCTTCCCATCGACATAATGGAATGGTTCATTGATTTGATTCCTTTT

Protein sequence

CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDIMEWFIDLIPF

Homology

[Close]

BLAST of MS002743.1 vs. NCBI nr
Match: XP_004146276.1 (signaling peptide TAXIMIN 1-like [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFA +SL+LS +GA+LWIFWS+LSCICPCCVCFAVL+DL+ISL+KLPID+
Sbjct: 4  CRPLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDV 63

Query: 61 MEWFIDLIP 70
          M+WF+ LIP
Sbjct: 64 MDWFVSLIP 72

[Close]

BLAST of MS002743.1 vs. NCBI nr
Match: XP_008456209.1 (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 53/68 (77.94%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 2  RPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDIM 61
          +PLGFLIGLPF+F+SL+LS +GA+LWIFWS+LSCICPCCVCFAVL+D +ISL+KLPI++M
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 62 EWFIDLIP 70
          +WFIDLIP
Sbjct: 64 DWFIDLIP 71

[Close]

BLAST of MS002743.1 vs. NCBI nr
Match: XP_010098442.1 (uncharacterized protein LOC21395386 [Morus notabilis] >EXB75033.1 hypothetical protein L484_012157 [Morus notabilis])

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-20
Identity = 49/69 (71.01%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFAF+SLL+SLVG ++WI  S+LSC+CPCC+CFA + ++AIS+VKLP+ I
Sbjct: 7  CRPLGFLIGLPFAFLSLLISLVGVVVWIIGSVLSCMCPCCICFAGIANMAISIVKLPVKI 66

Query: 61 MEWFIDLIP 70
          +EWF+DLIP
Sbjct: 67 IEWFVDLIP 75

[Close]

BLAST of MS002743.1 vs. NCBI nr
Match: XP_035543682.1 (signaling peptide TAXIMIN 2-like [Juglans regia])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFAFVSL+LSLVGA++W   S+L+C+CPCC+C A L +LA+SLVKLPI I
Sbjct: 4  CRPLGFLIGLPFAFVSLILSLVGAVVWTIGSVLTCLCPCCICCAGLANLAVSLVKLPIKI 63

Query: 61 MEWFIDLIP 70
          ++WFIDLIP
Sbjct: 64 IKWFIDLIP 72

[Close]

BLAST of MS002743.1 vs. NCBI nr
Match: KAB5534589.1 (hypothetical protein DKX38_017675 [Salix brachista] >KAG5235431.1 signaling peptide TAXIMIN [Salix suchowensis])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFA V+L+LSLVGA++W+  ++LSC+CPCC+CFA L + A+SLVKLP+ +
Sbjct: 4  CRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLPVKV 63

Query: 61 MEWFIDLIP 70
          M+WFIDLIP
Sbjct: 64 MKWFIDLIP 72

[Close]

BLAST of MS002743.1 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-20
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFL+GLPFAF+SLLLS++G I+WI   +LSCICPCC+C  VL ++AI L+K PI +
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 61 MEWFIDLIP 70
          MEWF+  IP
Sbjct: 66 MEWFMSKIP 74

[Close]

BLAST of MS002743.1 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-19
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFA V+L+L+LVGA++WI  ++LSC+CPCC CFA L + A+ L+KLPI +
Sbjct: 4  CRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIKV 63

Query: 61 MEWFIDLIP 70
          + WF   IP
Sbjct: 64 LRWFTHSIP 72

[Close]

BLAST of MS002743.1 vs. ExPASy TrEMBL
Match: A0A1S3C2P5 (uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 53/68 (77.94%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 2  RPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDIM 61
          +PLGFLIGLPF+F+SL+LS +GA+LWIFWS+LSCICPCCVCFAVL+D +ISL+KLPI++M
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 62 EWFIDLIP 70
          +WFIDLIP
Sbjct: 64 DWFIDLIP 71

[Close]

BLAST of MS002743.1 vs. ExPASy TrEMBL
Match: W9R7H7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012157 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 49/69 (71.01%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFAF+SLL+SLVG ++WI  S+LSC+CPCC+CFA + ++AIS+VKLP+ I
Sbjct: 7  CRPLGFLIGLPFAFLSLLISLVGVVVWIIGSVLSCMCPCCICFAGIANMAISIVKLPVKI 66

Query: 61 MEWFIDLIP 70
          +EWF+DLIP
Sbjct: 67 IEWFVDLIP 75

[Close]

BLAST of MS002743.1 vs. ExPASy TrEMBL
Match: A0A6N2MDW9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358856 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFA V+L+LSLVGA++W+  ++LSC+CPCC+CFA L + A+SLVKLP+ +
Sbjct: 4  CRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLPVKV 63

Query: 61 MEWFIDLIP 70
          M+WFIDLIP
Sbjct: 64 MKWFIDLIP 72

[Close]

BLAST of MS002743.1 vs. ExPASy TrEMBL
Match: A0A5N5KVX7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_017675 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFA V+L+LSLVGA++W+  ++LSC+CPCC+CFA L + A+SLVKLP+ +
Sbjct: 4  CRPLGFLIGLPFALVALVLSLVGAVVWVIGTVLSCLCPCCICFAGLANFAVSLVKLPVKV 63

Query: 61 MEWFIDLIP 70
          M+WFIDLIP
Sbjct: 64 MKWFIDLIP 72

[Close]

BLAST of MS002743.1 vs. ExPASy TrEMBL
Match: A0A6P9EM08 (signaling peptide TAXIMIN 2-like OS=Juglans regia OX=51240 GN=LOC118347715 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFAFVSL+LSLVGA++W   S+L+C+CPCC+C A L +LA+SLVKLPI I
Sbjct: 4  CRPLGFLIGLPFAFVSLILSLVGAVVWTIGSVLTCLCPCCICCAGLANLAVSLVKLPIKI 63

Query: 61 MEWFIDLIP 70
          ++WFIDLIP
Sbjct: 64 IKWFIDLIP 72

[Close]

BLAST of MS002743.1 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-21
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFL+GLPFAF+SLLLS++G I+WI   +LSCICPCC+C  VL ++AI L+K PI +
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 61 MEWFIDLIP 70
          MEWF+  IP
Sbjct: 66 MEWFMSKIP 74

[Close]

BLAST of MS002743.1 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-20
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  CRPLGFLIGLPFAFVSLLLSLVGAILWIFWSILSCICPCCVCFAVLTDLAISLVKLPIDI 60
          CRPLGFLIGLPFA V+L+L+LVGA++WI  ++LSC+CPCC CFA L + A+ L+KLPI +
Sbjct: 4  CRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIKV 63

Query: 61 MEWFIDLIP 70
          + WF   IP
Sbjct: 64 LRWFTHSIP 72

The following BLAST results are available for this feature:

BLAST of MS002743.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146276.1	9.5e-24	79.71	signaling peptide TAXIMIN 1-like [Cucumis sativus]	[more]
XP_008456209.1	1.4e-22	77.94	PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo]	[more]
XP_010098442.1	3.7e-20	71.01	uncharacterized protein LOC21395386 [Morus notabilis] >EXB75033.1 hypothetical p...	[more]
XP_035543682.1	1.4e-19	73.91	signaling peptide TAXIMIN 2-like [Juglans regia]	[more]
KAB5534589.1	1.4e-19	69.57	hypothetical protein DKX38_017675 [Salix brachista] >KAG5235431.1 signaling pept...	[more]

BLAST of MS002743.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82275	6.6e-20	65.22	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]
Q1G309	3.3e-19	62.32	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]

BLAST of MS002743.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2P5	6.7e-23	77.94	uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=...	[more]
W9R7H7	1.8e-20	71.01	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012157 PE=4 SV=1	[more]
A0A6N2MDW9	6.9e-20	69.57	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358856 PE=4 SV=...	[more]
A0A5N5KVX7	6.9e-20	69.57	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_017675 PE=4 SV=1	[more]
A0A6P9EM08	6.9e-20	73.91	signaling peptide TAXIMIN 2-like OS=Juglans regia OX=51240 GN=LOC118347715 PE=4 ...	[more]

BLAST of MS002743.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31090.1	4.7e-21	65.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20562.1	2.3e-20	62.32	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF10	SUBFAMILY NOT NAMED	coord: 1..69
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002743	MS002743	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002743.1-cds	MS002743.1-cds-scaffold66:197096..197184	CDS
MS002743.1-cds	MS002743.1-cds-scaffold66:197678..197798	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002743.1	MS002743.1-protein	polypeptide