MS002496.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002496.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	S-protein homolog
Location	scaffold318: 535311 .. 535736 (+)
Sequence length	426
RNA-Seq Expression	MS002496.1
Synteny	MS002496.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATCCAACAAATAGGTACGTGGCTGTCTTGTTGCTGGTCATGGTGGCTCTTGTGGGTGCATCAGGGTTACCGTTTGGAAGATGGAATGTTCACATTGTTAATAAGTTAAACAATGATGTCTTGGCTGTGCACTGCAAGTCGAAAGACAATGATTTGGGCTATCAACGTTTGGTTCCTGGAGCTGATTTCCATTGGAGCTTTCGAGTGAATGTGTGGGGAACAACCTTATTTTGGTGCAACTTACAAAAGTCAAGTGCCTATGCCTCGTTTGATACATTTTGGCCTGAGTCGAAGAATCAGTGGCTTCGTTATAGGTGCACCGATAGAACCGAGGGAAATTGCATTTGGACGGCCAAAGATGACGGAATTTACTTGAAAAACATTCCCAATAATGTTGAAGAGTTGGTTCATAAGTGGACCAGT

mRNA sequence

AAACATCCAACAAATAGGTACGTGGCTGTCTTGTTGCTGGTCATGGTGGCTCTTGTGGGTGCATCAGGGTTACCGTTTGGAAGATGGAATGTTCACATTGTTAATAAGTTAAACAATGATGTCTTGGCTGTGCACTGCAAGTCGAAAGACAATGATTTGGGCTATCAACGTTTGGTTCCTGGAGCTGATTTCCATTGGAGCTTTCGAGTGAATGTGTGGGGAACAACCTTATTTTGGTGCAACTTACAAAAGTCAAGTGCCTATGCCTCGTTTGATACATTTTGGCCTGAGTCGAAGAATCAGTGGCTTCGTTATAGGTGCACCGATAGAACCGAGGGAAATTGCATTTGGACGGCCAAAGATGACGGAATTTACTTGAAAAACATTCCCAATAATGTTGAAGAGTTGGTTCATAAGTGGACCAGT

Coding sequence (CDS)

AAACATCCAACAAATAGGTACGTGGCTGTCTTGTTGCTGGTCATGGTGGCTCTTGTGGGTGCATCAGGGTTACCGTTTGGAAGATGGAATGTTCACATTGTTAATAAGTTAAACAATGATGTCTTGGCTGTGCACTGCAAGTCGAAAGACAATGATTTGGGCTATCAACGTTTGGTTCCTGGAGCTGATTTCCATTGGAGCTTTCGAGTGAATGTGTGGGGAACAACCTTATTTTGGTGCAACTTACAAAAGTCAAGTGCCTATGCCTCGTTTGATACATTTTGGCCTGAGTCGAAGAATCAGTGGCTTCGTTATAGGTGCACCGATAGAACCGAGGGAAATTGCATTTGGACGGCCAAAGATGACGGAATTTACTTGAAAAACATTCCCAATAATGTTGAAGAGTTGGTTCATAAGTGGACCAGT

Protein sequence

KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

Homology

[Close]

BLAST of MS002496.1 vs. NCBI nr
Match: XP_022143852.1 (S-protein homolog 74-like [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 5.5e-79
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVP 60
           K+PTNRYV VLLLVMVALVGASGLP GRWNVHIVNKLNNDVLAVHCKSKDNDL YQRLVP
Sbjct: 4   KYPTNRYVVVLLLVMVALVGASGLPLGRWNVHIVNKLNNDVLAVHCKSKDNDLRYQRLVP 63

Query: 61  GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAK 120
           GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRT+GNCIWTAK
Sbjct: 64  GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTKGNCIWTAK 123

Query: 121 DDGIYLKNIPNNVEELVHKWTS 143
           DDGIYLKNIP+NVEELVHKWTS
Sbjct: 124 DDGIYLKNIPDNVEELVHKWTS 145

[Close]

BLAST of MS002496.1 vs. NCBI nr
Match: XP_022143839.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 103/149 (69.13%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 2   HPTNRYVAVLLLVMVALVGASGLPFG--------RWNVHIVNKLNNDVLAVHCKSKDNDL 61
           +PTNR+VAVLLLV  ALVGA   P G        RW+VH+VN LNN+ L VHCKSKD+DL
Sbjct: 5   YPTNRFVAVLLLVSAALVGAQTKPSGSPSLLVTQRWHVHVVNNLNNNFLDVHCKSKDDDL 64

Query: 62  GYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEG 121
           GYQRLV GADF WSF+VN WGTTLFWCNL K  AY +F+ FWPES+N WLR RC + TEG
Sbjct: 65  GYQRLVRGADFQWSFKVNFWGTTLFWCNLHKPGAYVTFEVFWPESRNAWLRNRCHNGTEG 124

Query: 122 NCIWTAKDDGIYLKNIPNNVEELVHKWTS 143
           +CIWTAKDDGIYL+NIP N EEL+HKW S
Sbjct: 125 HCIWTAKDDGIYLRNIPTNSEELIHKWIS 153

[Close]

BLAST of MS002496.1 vs. NCBI nr
Match: XP_004139726.1 (S-protein homolog 74-like [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 2.7e-41
Identity = 84/144 (58.33%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 6   RYVAVLLLVMVALVGASGLPF--------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQR 65
           R V V     +ALVGA  +P          R+ VH+VN L+N  L VHC+SKDNDLGYQ 
Sbjct: 3   RNVVVFWFATLALVGADRIPRTPFVPVNPARYYVHVVNGLSNYDLGVHCQSKDNDLGYQH 62

Query: 66  LV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCI 125
           L+  G DF W+F+VN++GTTLFWC L+K  AY SF++FWPES+N WLR RC    +GNCI
Sbjct: 63  LINRGDDFQWNFKVNIFGTTLFWCKLEKQDAYVSFESFWPESRNFWLRDRC--GPQGNCI 122

Query: 126 WTAKDDGIYLKNIPNNVEELVHKW 141
           WTAKDDGIYL+N P NV+E VHKW
Sbjct: 123 WTAKDDGIYLRNNPTNVDEYVHKW 144

[Close]

BLAST of MS002496.1 vs. NCBI nr
Match: XP_022991767.1 (S-protein homolog 74-like [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 80/140 (57.14%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 8   VAVLLLVMVALVGAS--GLPF----GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-P 67
           V VLLL MVA VGA   G+ +     R+ VH+ N L+   L VHC+SKD+DLG   L   
Sbjct: 5   VVVLLLGMVAFVGAQVPGIIYQPKPSRYYVHVANGLSTLPLTVHCQSKDDDLGIHHLPNR 64

Query: 68  GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAK 127
           G DF W+F+VN WGTTLFWC L++  AY +F+TFWPESKN WLR RC + T+G C+W AK
Sbjct: 65  GDDFQWNFKVNFWGTTLFWCRLERPDAYVTFETFWPESKNTWLRDRCRNGTQGTCLWIAK 124

Query: 128 DDGIYLKNIPNNVEELVHKW 141
           DDGIYL N P N +EL+HKW
Sbjct: 125 DDGIYLFNFPANNDELIHKW 144

[Close]

BLAST of MS002496.1 vs. NCBI nr
Match: XP_022143724.1 (S-protein homolog 1-like [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 7.3e-39
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 10  VLLLVMVALVGASGLPF----------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV 69
           VLL V+ AL  A   PF           +W+VH+VN L+N  L  HCKS+D DLG   L 
Sbjct: 6   VLLAVLAALTVAQ--PFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLN 65

Query: 70  PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTA 129
            GA+  WSF+ NVWGTTLFWC L+K    ASFD FW E  + WL YRCT+  +G CIWTA
Sbjct: 66  RGAEIQWSFKENVWGTTLFWCFLKKPGGSASFDVFWREVDHLWLHYRCTN--DGTCIWTA 125

Query: 130 KDDGIYLKNIPNNVEELVHKWTS 143
           KDDGIY++NIP+N++ELVHKWTS
Sbjct: 126 KDDGIYIRNIPDNLDELVHKWTS 144

[Close]

BLAST of MS002496.1 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 29  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSA 88
           W V +VN L   + L +HCKSK++DLG   L     F W+F  N+  +T FWC + K + 
Sbjct: 41  WQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKDNG 100

Query: 89  YASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW 141
           + + + FW +     L +RC  +   NCIWTAK DG+YL N  +  + L  KW
Sbjct: 101 HMNVNVFWDD---VILFHRCGWK---NCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of MS002496.1 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-17
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 29  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSA 88
           W V + N L   + L +HCKSK+NDLG   L     F W+F  N+  +TLFWC + K   
Sbjct: 41  WQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSKDDG 100

Query: 89  YASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS 143
           + +   FW +     L +RC  +   NC+WTAK+DG+YL N     + L  KW S
Sbjct: 101 HMNVKVFWDD---VILFHRCDWK---NCVWTAKNDGLYLWNSAIGEDVLSEKWKS 149

[Close]

BLAST of MS002496.1 vs. ExPASy Swiss-Prot
Match: Q9LW22 (S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-13
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 34  VNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDT 93
           +N  N ++L VHCKSK+ND+G + L  G    +SF+ N WGTT FWCNL K   Y  +  
Sbjct: 32  LNPKNKNILKVHCKSKNNDIGVKYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYRG 91

Query: 94  FWPESKNQWLRYRCTDRTEGNCIWTAKDDGIY 126
               +  Q +     D +  N  W A+DDGIY
Sbjct: 92  I---TAYQAIGLFAKDGSSYN--WLARDDGIY 118

[Close]

BLAST of MS002496.1 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 41/140 (29.29%), Postives = 64/140 (45.71%), Query Frame = 0


Query: 10  VLLLVMVALVGASGLPF--------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPG 69
           ++ +V+++L+G   L          G     ++   N+ +L VHCKS+D+D G+  L  G
Sbjct: 4   IIFIVLISLIGCETLQHDGKVFPMKGPLTRVVIYNDNDYLLGVHCKSRDDDHGFHILQKG 63

Query: 70  ADFHWSFRVNVWGTTLFWCNL-QKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAK 129
             + W F VN   +TL++C   Q+      FD +     +     RC      NC W AK
Sbjct: 64  GLYGWMFYVNFMNSTLYFCGFSQEQVKKGVFDIYKAVRDSS----RCR-----NCTWEAK 123

Query: 130 DDGIYLKNIPNNVEELVHKW 141
           +DGIY          L +KW
Sbjct: 124 EDGIYGYGEIPKKNPLFYKW 134

[Close]

BLAST of MS002496.1 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-10
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 20  GASGL-PFGRWN-VHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTL 79
           G  GL PF R   V + N +    L +HCKSK +DLG   +    ++H+ F+ N+W +TL
Sbjct: 18  GYGGLPPFWRATVVTMTNLIGGPPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTL 77

Query: 80  FWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDG 124
           F+C+ Q  S + SFD  +   ++Q +   C D     C W  K DG
Sbjct: 78  FFCSFQWDSQFKSFD-IYDAQRDQGI---CDD-----CQWEIKPDG 114

[Close]

BLAST of MS002496.1 vs. ExPASy TrEMBL
Match: A0A6J1CS23 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013665 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.7e-79
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVP 60
           K+PTNRYV VLLLVMVALVGASGLP GRWNVHIVNKLNNDVLAVHCKSKDNDL YQRLVP
Sbjct: 4   KYPTNRYVVVLLLVMVALVGASGLPLGRWNVHIVNKLNNDVLAVHCKSKDNDLRYQRLVP 63

Query: 61  GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAK 120
           GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRT+GNCIWTAK
Sbjct: 64  GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTKGNCIWTAK 123

Query: 121 DDGIYLKNIPNNVEELVHKWTS 143
           DDGIYLKNIP+NVEELVHKWTS
Sbjct: 124 DDGIYLKNIPDNVEELVHKWTS 145

[Close]

BLAST of MS002496.1 vs. ExPASy TrEMBL
Match: A0A6J1CQI8 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013653 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.2e-57
Identity = 103/149 (69.13%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 2   HPTNRYVAVLLLVMVALVGASGLPFG--------RWNVHIVNKLNNDVLAVHCKSKDNDL 61
           +PTNR+VAVLLLV  ALVGA   P G        RW+VH+VN LNN+ L VHCKSKD+DL
Sbjct: 5   YPTNRFVAVLLLVSAALVGAQTKPSGSPSLLVTQRWHVHVVNNLNNNFLDVHCKSKDDDL 64

Query: 62  GYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEG 121
           GYQRLV GADF WSF+VN WGTTLFWCNL K  AY +F+ FWPES+N WLR RC + TEG
Sbjct: 65  GYQRLVRGADFQWSFKVNFWGTTLFWCNLHKPGAYVTFEVFWPESRNAWLRNRCHNGTEG 124

Query: 122 NCIWTAKDDGIYLKNIPNNVEELVHKWTS 143
           +CIWTAKDDGIYL+NIP N EEL+HKW S
Sbjct: 125 HCIWTAKDDGIYLRNIPTNSEELIHKWIS 153

[Close]

BLAST of MS002496.1 vs. ExPASy TrEMBL
Match: A0A6J1JMS5 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488300 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 80/140 (57.14%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 8   VAVLLLVMVALVGAS--GLPF----GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-P 67
           V VLLL MVA VGA   G+ +     R+ VH+ N L+   L VHC+SKD+DLG   L   
Sbjct: 5   VVVLLLGMVAFVGAQVPGIIYQPKPSRYYVHVANGLSTLPLTVHCQSKDDDLGIHHLPNR 64

Query: 68  GADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAK 127
           G DF W+F+VN WGTTLFWC L++  AY +F+TFWPESKN WLR RC + T+G C+W AK
Sbjct: 65  GDDFQWNFKVNFWGTTLFWCRLERPDAYVTFETFWPESKNTWLRDRCRNGTQGTCLWIAK 124

Query: 128 DDGIYLKNIPNNVEELVHKW 141
           DDGIYL N P N +EL+HKW
Sbjct: 125 DDGIYLFNFPANNDELIHKW 144

[Close]

BLAST of MS002496.1 vs. ExPASy TrEMBL
Match: A0A6J1CQ65 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013561 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.5e-39
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 10  VLLLVMVALVGASGLPF----------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV 69
           VLL V+ AL  A   PF           +W+VH+VN L+N  L  HCKS+D DLG   L 
Sbjct: 6   VLLAVLAALTVAQ--PFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLN 65

Query: 70  PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTA 129
            GA+  WSF+ NVWGTTLFWC L+K    ASFD FW E  + WL YRCT+  +G CIWTA
Sbjct: 66  RGAEIQWSFKENVWGTTLFWCFLKKPGGSASFDVFWREVDHLWLHYRCTN--DGTCIWTA 125

Query: 130 KDDGIYLKNIPNNVEELVHKWTS 143
           KDDGIY++NIP+N++ELVHKWTS
Sbjct: 126 KDDGIYIRNIPDNLDELVHKWTS 144

[Close]

BLAST of MS002496.1 vs. ExPASy TrEMBL
Match: A0A6J1F497 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440333 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.6e-39
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 8   VAVLLLVMVALVGAS-------GLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV- 67
           + V  L  VALVGA         L   R+ +H+VN L+N  L VHC+SKD+DLGY  L+ 
Sbjct: 5   IVVFFLFTVALVGAQVPRVALPPLGPSRYYIHVVNGLSNLGLLVHCQSKDDDLGYHHLLN 64

Query: 68  PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTA 127
            G D+ W+F+VN WGTTLFWC ++   AY SF++FWPES++ WLR RC   T G CIWTA
Sbjct: 65  HGDDYQWNFKVNFWGTTLFWCKMETPDAYVSFESFWPESQHLWLRDRCKHGTVGTCIWTA 124

Query: 128 KDDGIYLKNIPNNVEELVHKWT 142
           KDDGIYL+N   NV+EL+HKWT
Sbjct: 125 KDDGIYLRNFLANVDELIHKWT 146

[Close]

BLAST of MS002496.1 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-18
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 29  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSA 88
           W V +VN L   + L +HCKSK++DLG   L     F W+F  N+  +T FWC + K + 
Sbjct: 41  WQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKDNG 100

Query: 89  YASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW 141
           + + + FW +     L +RC  +   NCIWTAK DG+YL N  +  + L  KW
Sbjct: 101 HMNVNVFWDD---VILFHRCGWK---NCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of MS002496.1 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-18
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 29  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSA 88
           W V + N L   + L +HCKSK+NDLG   L     F W+F  N+  +TLFWC + K   
Sbjct: 41  WQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSKDDG 100

Query: 89  YASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS 143
           + +   FW +     L +RC  +   NC+WTAK+DG+YL N     + L  KW S
Sbjct: 101 HMNVKVFWDD---VILFHRCDWK---NCVWTAKNDGLYLWNSAIGEDVLSEKWKS 149

[Close]

BLAST of MS002496.1 vs. TAIR 10
Match: AT3G26880.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-14
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 34  VNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDT 93
           +N  N ++L VHCKSK+ND+G + L  G    +SF+ N WGTT FWCNL K   Y  +  
Sbjct: 32  LNPKNKNILKVHCKSKNNDIGVKYLKIGEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYRG 91

Query: 94  FWPESKNQWLRYRCTDRTEGNCIWTAKDDGIY 126
               +  Q +     D +  N  W A+DDGIY
Sbjct: 92  I---TAYQAIGLFAKDGSSYN--WLARDDGIY 118

[Close]

BLAST of MS002496.1 vs. TAIR 10
Match: AT5G04347.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-13
Identity = 43/123 (34.96%), Postives = 60/123 (48.78%), Query Frame = 0


Query: 26  FGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKS 85
           FG   + + N+LNN VL V C+SKD++LG   L  G     +F  NVW  TLFWCNL K 
Sbjct: 19  FGISTLLVKNELNNKVLGVRCRSKDDNLGDHILRVGQMTKNNFDDNVWRRTLFWCNLWKG 78

Query: 86  ---SAYASFDTFWPESKNQWL-----RYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELV 141
                + +FD +    ++QW      RY          +W A++DGIY    P    +  
Sbjct: 79  PDFKLHVAFDAY----RSQWKADIGPRY----------LWIAREDGIYYTQHPETPPKKK 127

[Close]

BLAST of MS002496.1 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-11
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 20  GASGL-PFGRWN-VHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTL 79
           G  GL PF R   V + N +    L +HCKSK +DLG   +    ++H+ F+ N+W +TL
Sbjct: 18  GYGGLPPFWRATVVTMTNLIGGPPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTL 77

Query: 80  FWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDG 124
           F+C+ Q  S + SFD  +   ++Q +   C D     C W  K DG
Sbjct: 78  FFCSFQWDSQFKSFD-IYDAQRDQGI---CDD-----CQWEIKPDG 114

The following BLAST results are available for this feature:

BLAST of MS002496.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143852.1	5.5e-79	95.77	S-protein homolog 74-like [Momordica charantia]	[more]
XP_022143839.1	4.6e-57	69.13	S-protein homolog 1-like [Momordica charantia]	[more]
XP_004139726.1	2.7e-41	58.33	S-protein homolog 74-like [Cucumis sativus]	[more]
XP_022991767.1	5.6e-39	57.14	S-protein homolog 74-like [Cucurbita maxima]	[more]
XP_022143724.1	7.3e-39	55.94	S-protein homolog 1-like [Momordica charantia]	[more]

BLAST of MS002496.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLS0	8.2e-17	38.94	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q2HQ46	8.2e-17	39.13	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
Q9LW22	7.2e-13	41.30	S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1	[more]
F2Q9V4	2.5e-10	29.29	S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2	[more]
O23020	4.3e-10	35.85	S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1	[more]

BLAST of MS002496.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CS23	2.7e-79	95.77	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013665 PE=3 SV=1	[more]
A0A6J1CQI8	2.2e-57	69.13	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013653 PE=3 SV=1	[more]
A0A6J1JMS5	2.7e-39	57.14	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488300 PE=3 SV=1	[more]
A0A6J1CQ65	3.5e-39	55.94	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013561 PE=3 SV=1	[more]
A0A6J1F497	4.6e-39	54.93	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440333 PE=3 SV=1	[more]

BLAST of MS002496.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16295.1	5.8e-18	38.94	S-protein homologue 1	[more]
AT4G29035.1	5.8e-18	39.13	Plant self-incompatibility protein S1 family	[more]
AT3G26880.1	5.1e-14	41.30	Plant self-incompatibility protein S1 family	[more]
AT5G04347.1	3.3e-13	34.96	Plant self-incompatibility protein S1 family	[more]
AT1G04645.1	3.1e-11	35.85	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 30..140 e-value: 5.3E-28 score: 97.6
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 8..141
None	No IPR available	PANTHER	PTHR31232:SF93	BINDING PROTEIN, PUTATIVE-RELATED	coord: 8..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002496	MS002496	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002496.1-cds	MS002496.1-cds-scaffold318:535311..535736	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002496.1	MS002496.1-protein	polypeptide