MS002388.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002388.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Serine-rich protein-related
Location	scaffold30: 4531570 .. 4531887 (+)
Sequence length	318
RNA-Seq Expression	MS002388.1
Synteny	MS002388.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTTCCATGGCCTCAAATTCTGCCCCCTCCAAACGCAGGTGCCTCTGTTCTCCGACCAACCATCCCGGCTCTTTCCGCTGCAGTTTTCATCGGAACCGCCGCAAGGTCGTCTCCGCTACGTCCTCATCCTCCATTGCTGCCATTTCCACTGCGCAATTGGATCTCGCGATGTTGGCGAAGGCGAACGCGCTGAGGGCGTTTCTTCTGCAGATCATCAAGCCGTCGGGTAACGATCCTCAGCGGCGGAGGAATTTCAACCCGAGGCCTTCCAGGTTTTGCTTGATGAACAATCATGGAACAGGATTGGCTGTTTCT

mRNA sequence

CTAATTTCCATGGCCTCAAATTCTGCCCCCTCCAAACGCAGGTGCCTCTGTTCTCCGACCAACCATCCCGGCTCTTTCCGCTGCAGTTTTCATCGGAACCGCCGCAAGGTCGTCTCCGCTACGTCCTCATCCTCCATTGCTGCCATTTCCACTGCGCAATTGGATCTCGCGATGTTGGCGAAGGCGAACGCGCTGAGGGCGTTTCTTCTGCAGATCATCAAGCCGTCGGGTAACGATCCTCAGCGGCGGAGGAATTTCAACCCGAGGCCTTCCAGGTTTTGCTTGATGAACAATCATGGAACAGGATTGGCTGTTTCT

Coding sequence (CDS)

CTAATTTCCATGGCCTCAAATTCTGCCCCCTCCAAACGCAGGTGCCTCTGTTCTCCGACCAACCATCCCGGCTCTTTCCGCTGCAGTTTTCATCGGAACCGCCGCAAGGTCGTCTCCGCTACGTCCTCATCCTCCATTGCTGCCATTTCCACTGCGCAATTGGATCTCGCGATGTTGGCGAAGGCGAACGCGCTGAGGGCGTTTCTTCTGCAGATCATCAAGCCGTCGGGTAACGATCCTCAGCGGCGGAGGAATTTCAACCCGAGGCCTTCCAGGTTTTGCTTGATGAACAATCATGGAACAGGATTGGCTGTTTCT

Protein sequence

LISMASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

Homology

[Close]

BLAST of MS002388.1 vs. NCBI nr
Match: XP_022134810.1 (uncharacterized protein LOC111006991 [Momordica charantia])

HSP 1 Score: 203.8 bits (517), Expect = 7.6e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 4   MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKAN 63
           MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKAN
Sbjct: 1   MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKAN 60

Query: 64  ALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           ALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
Sbjct: 61  ALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 103

[Close]

BLAST of MS002388.1 vs. NCBI nr
Match: KAG6587860.1 (hypothetical protein SDJN03_16425, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-34
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   LISMASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLA 60
           +I+  + S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSIAAI++AQL+L + A
Sbjct: 492 VIAKNTASVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSIAAITSAQLELTVFA 551

Query: 61  KANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           KANA+RAFLL II+PS ND QRRRNF+PRPSRFCLMN HGTGLAVS
Sbjct: 552 KANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 597

[Close]

BLAST of MS002388.1 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-34
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 8   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 67
           S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+
Sbjct: 14  SIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRS 73

Query: 68  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           FLLQII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Sbjct: 74  FLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of MS002388.1 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 8   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 67
           S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSI AI++AQL+L + AKANA+RA
Sbjct: 14  SVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQLELTVFAKANAVRA 73

Query: 68  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           FLL II+PS ND QRRRNF+PRPSRFCLMN HGTGLAVS
Sbjct: 74  FLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of MS002388.1 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothetical protein SDJN02_14503, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-33
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 8   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 67
           S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+
Sbjct: 14  SIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRS 73

Query: 68  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           FL QII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Sbjct: 74  FLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of MS002388.1 vs. ExPASy TrEMBL
Match: A0A6J1BZD6 (uncharacterized protein LOC111006991 OS=Momordica charantia OX=3673 GN=LOC111006991 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 4   MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKAN 63
           MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKAN
Sbjct: 1   MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKAN 60

Query: 64  ALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           ALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
Sbjct: 61  ALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 103

[Close]

BLAST of MS002388.1 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.4e-34
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 8   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 67
           S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSI AI++AQL+L + AKANA+RA
Sbjct: 14  SVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQLELTVFAKANAVRA 73

Query: 68  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           FLL II+PS ND QRRRNF+PRPSRFCLMN HGTGLAVS
Sbjct: 74  FLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of MS002388.1 vs. ExPASy TrEMBL
Match: A0A6J1E1K3 (uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC111429944 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.7e-34
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 8   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 67
           S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+
Sbjct: 14  SIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRS 73

Query: 68  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           FL QII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Sbjct: 74  FLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of MS002388.1 vs. ExPASy TrEMBL
Match: A0A6J1KSU0 (uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 8   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 67
           S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSI+AI++AQL+L + AKANA+RA
Sbjct: 14  SVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQLELTVFAKANAVRA 73

Query: 68  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           FLL II+PS ND QRRRNF PRPSRFCLMN HGTGLAVS
Sbjct: 74  FLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of MS002388.1 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.5e-30
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 11  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSA-TSSSSIAAISTAQLDLAMLAKANALRAFL 70
           + R+CLCSPT HPGSFRCSFHRNR K+ S+ +SSSS++ I+TA L+   LAKANALR+FL
Sbjct: 17  ASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTADLE---LAKANALRSFL 76

Query: 71  LQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 107
           LQ+IKPS ND QRRRNF+PRPSRFCLMN+H TGLAVS
Sbjct: 77  LQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

[Close]

BLAST of MS002388.1 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-11
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 2   ISMASNSAPS-----KRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDL 61
           IS++ N  PS      RRC+CSPT HPGSFRCS H+N    V+       A+ +T  L++
Sbjct: 105 ISVSKNQPPSHNHKISRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNM 164

Query: 62  AMLAKANAL-----------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLM 97
              A  N+L           R  L  +I+PS +  +RR  + PRPSR  +M
Sbjct: 165 RRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

[Close]

BLAST of MS002388.1 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 11  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL----- 70
           S+RRC+CSPT HPGSFRCS H+N    V+       A+ +T  L++   A  N+L     
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGG 181

Query: 71  ------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMN 98
                 R  L  +I+PS +  +RR  + PR SR   M+
Sbjct: 182 VEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of MS002388.1 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 11  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL----- 70
           S+RRC+CSPT HPGSFRCS H+N    V+       A+ +T  L++   A  N+L     
Sbjct: 122 SRRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGG 181

Query: 71  ------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMN 98
                 R  L  +I+PS +  +RR  + PR SR   M+
Sbjct: 182 VEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of MS002388.1 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 42/109 (38.53%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 6   SNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAIS---------TAQLDL 65
           S++  +KR+CLCSPT HPGSFRCSFHR      S T +SS    +            L+L
Sbjct: 62  SSNHQTKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNL 121

Query: 66  AMLAKANAL------------RAFLLQIIKPSGNDPQRRRNFNPRPSRF 94
             LA  N+L            R+    + KPS     RR  F PR SRF
Sbjct: 122 RKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of MS002388.1 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 4  MASNSAPSKRRCLCSPTNHPGSFRCSFHRN----RRKVVSATS 43
          ++  ++ +K  CLCSPT HPGSFRC  HR+    R K + A S
Sbjct: 33 LSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAAS 75

The following BLAST results are available for this feature:

BLAST of MS002388.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134810.1	7.6e-49	100.00	uncharacterized protein LOC111006991 [Momordica charantia]	[more]
KAG6587860.1	4.0e-34	72.64	hypothetical protein SDJN03_16425, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023515429.1	4.0e-34	78.79	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022927032.1	1.5e-33	75.76	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]
XP_022921799.1	2.0e-33	77.78	uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothet...	[more]

BLAST of MS002388.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002388.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZD6	3.7e-49	100.00	uncharacterized protein LOC111006991 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1EG01	7.4e-34	75.76	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A6J1E1K3	9.7e-34	77.78	uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1KSU0	1.7e-33	75.76	uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277...	[more]
A0A0A0LYY6	6.5e-30	73.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]

BLAST of MS002388.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	3.9e-11	37.84	serine-rich protein-related	[more]
AT5G25280.1	1.3e-09	37.76	serine-rich protein-related	[more]
AT5G25280.2	1.3e-09	37.76	serine-rich protein-related	[more]
AT5G20370.1	2.2e-09	38.53	serine-rich protein-related	[more]
AT1G67910.1	1.6e-04	46.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 5..100
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 5..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002388	MS002388	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002388.1-cds	MS002388.1-cds-scaffold30:4531570..4531887	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002388.1	MS002388.1-protein	polypeptide