MS002333.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002333.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein sumv-1 like
Location	scaffold30: 4187399 .. 4187635 (+)
Sequence length	237
RNA-Seq Expression	MS002333.1
Synteny	MS002333.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGATCGCAGCAAATGAATGGTCCATCTCCGGCTCAGCACACCACCGAGGTTCTTTCCCAGCGCAAGAAACTGCCGGTTTGTCCGATGAAAATGGCGGTCGGCGGCTTCGTGATCGCCGCCACACTCGGTTACTTCGTCCTCTGCACCAAGAAGAAGCCCGAGGCTTCCGCCCTTGACGTCGCTAAAGTCACCGCCGGCGTGGCTACTCCGGAGAACACCCGTCCCCGCACG

mRNA sequence

ATGGCAGGATCGCAGCAAATGAATGGTCCATCTCCGGCTCAGCACACCACCGAGGTTCTTTCCCAGCGCAAGAAACTGCCGGTTTGTCCGATGAAAATGGCGGTCGGCGGCTTCGTGATCGCCGCCACACTCGGTTACTTCGTCCTCTGCACCAAGAAGAAGCCCGAGGCTTCCGCCCTTGACGTCGCTAAAGTCACCGCCGGCGTGGCTACTCCGGAGAACACCCGTCCCCGCACG

Coding sequence (CDS)

ATGGCAGGATCGCAGCAAATGAATGGTCCATCTCCGGCTCAGCACACCACCGAGGTTCTTTCCCAGCGCAAGAAACTGCCGGTTTGTCCGATGAAAATGGCGGTCGGCGGCTTCGTGATCGCCGCCACACTCGGTTACTTCGTCCTCTGCACCAAGAAGAAGCCCGAGGCTTCCGCCCTTGACGTCGCTAAAGTCACCGCCGGCGTGGCTACTCCGGAGAACACCCGTCCCCGCACG

Protein sequence

MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALDVAKVTAGVATPENTRPRT

Homology

[Close]

BLAST of MS002333.1 vs. NCBI nr
Match: XP_022134574.1 (uncharacterized protein LOC111006810 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL 60
           MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL
Sbjct: 66  MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL 125

Query: 61  DVAKVTAGVATPENTRPRT 80
           DVAKVTAGVATPENTRPRT
Sbjct: 126 DVAKVTAGVATPENTRPRT 144

[Close]

BLAST of MS002333.1 vs. NCBI nr
Match: KAA0035091.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYJ95987.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MAGSQQMN-------GPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKK 60
          M GSQQ+N       GPSPAQHTTEVL QRKKLPVCPM+MA+GGF IAATLGYFVL TKK
Sbjct: 1  MTGSQQVNATGDRMKGPSPAQHTTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60

Query: 61 KPEASALDVAKVTAGVATPENTRPRT 80
          KPEASALDVAKVT G++TP+NT PRT
Sbjct: 61 KPEASALDVAKVTTGISTPDNTHPRT 86

[Close]

BLAST of MS002333.1 vs. NCBI nr
Match: KAG2717864.1 (hypothetical protein I3760_03G194000 [Carya illinoinensis] >KAG6661827.1 hypothetical protein CIPAW_03G202100 [Carya illinoinensis] >KAG6723093.1 hypothetical protein I3842_03G191900 [Carya illinoinensis] >KAG7988545.1 hypothetical protein I3843_03G192100 [Carya illinoinensis])

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-21
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 3  GSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALDV 62
          G++ M GPSP QH+TE L QR+KLP CPM+MA+GGF I ATL YF+L +KKKPEASA+DV
Sbjct: 11 GAEAMKGPSPGQHSTEALHQRRKLPYCPMRMAIGGFAITATLAYFILYSKKKPEASAIDV 70

Query: 63 AKVTAGVATPENTRPR 79
          AKV  GV+ P+NT PR
Sbjct: 71 AKVATGVSHPDNTHPR 86

[Close]

BLAST of MS002333.1 vs. NCBI nr
Match: KAE8126076.1 (hypothetical protein FH972_020822 [Carpinus fangiana])

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-21
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 3  GSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALDV 62
          G++ M GPSP QH+TEVL QR+KLP CPM+MA+GGF I A LGY VL +KKKPEASA DV
Sbjct: 11 GAEAMKGPSPGQHSTEVLHQRRKLPFCPMRMAIGGFAITAALGYLVLYSKKKPEASAADV 70

Query: 63 AKVTAGVATPENTRPR 79
          AKV  GV+ PENT PR
Sbjct: 71 AKVVVGVSHPENTHPR 86

[Close]

BLAST of MS002333.1 vs. NCBI nr
Match: PQP98417.1 (hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-21
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 2  AGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALD 61
          AG+Q M GPSPAQH+TEVL Q  KL  CPM+MA+GGF +  T+GYF L TKKKPEASALD
Sbjct: 11 AGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYTKKKPEASALD 70

Query: 62 VAKVTAGVATPENTRPR 79
          VAKV  G + PENT PR
Sbjct: 71 VAKVATGFSNPENTHPR 87

[Close]

BLAST of MS002333.1 vs. ExPASy TrEMBL
Match: A0A6J1BZ44 (uncharacterized protein LOC111006810 OS=Momordica charantia OX=3673 GN=LOC111006810 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL 60
           MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL
Sbjct: 66  MAGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASAL 125

Query: 61  DVAKVTAGVATPENTRPRT 80
           DVAKVTAGVATPENTRPRT
Sbjct: 126 DVAKVTAGVATPENTRPRT 144

[Close]

BLAST of MS002333.1 vs. ExPASy TrEMBL
Match: A0A5D3BA37 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00570 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MAGSQQMN-------GPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKK 60
          M GSQQ+N       GPSPAQHTTEVL QRKKLPVCPM+MA+GGF IAATLGYFVL TKK
Sbjct: 1  MTGSQQVNATGDRMKGPSPAQHTTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60

Query: 61 KPEASALDVAKVTAGVATPENTRPRT 80
          KPEASALDVAKVT G++TP+NT PRT
Sbjct: 61 KPEASALDVAKVTTGISTPDNTHPRT 86

[Close]

BLAST of MS002333.1 vs. ExPASy TrEMBL
Match: A0A5N6RUE0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020822 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 3  GSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALDV 62
          G++ M GPSP QH+TEVL QR+KLP CPM+MA+GGF I A LGY VL +KKKPEASA DV
Sbjct: 11 GAEAMKGPSPGQHSTEVLHQRRKLPFCPMRMAIGGFAITAALGYLVLYSKKKPEASAADV 70

Query: 63 AKVTAGVATPENTRPR 79
          AKV  GV+ PENT PR
Sbjct: 71 AKVVVGVSHPENTHPR 86

[Close]

BLAST of MS002333.1 vs. ExPASy TrEMBL
Match: A0A314Y3C0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22000 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 2  AGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALD 61
          AG+Q M GPSPAQH+TEVL Q  KL  CPM+MA+GGF +  T+GYF L TKKKPEASALD
Sbjct: 11 AGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYTKKKPEASALD 70

Query: 62 VAKVTAGVATPENTRPR 79
          VAKV  G + PENT PR
Sbjct: 71 VAKVATGFSNPENTHPR 87

[Close]

BLAST of MS002333.1 vs. ExPASy TrEMBL
Match: A0A314XVK0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32198 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.0e-21
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 2  AGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALD 61
          AG+Q M GPSPAQH+TEVL Q  KL  CPM+MA+GGF +  T+GYF L TKKKPEASALD
Sbjct: 11 AGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYTKKKPEASALD 70

Query: 62 VAKVTAGVATPENTRPR 79
          VAKV  G + PENT PR
Sbjct: 71 VAKVVTGFSHPENTHPR 87

[Close]

BLAST of MS002333.1 vs. TAIR 10
Match: AT4G31830.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 2  AGSQQMNGPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKKKPEASALD 61
          AG +    P P  +   VL QR+ LP     MA+ G  I+  + Y V+  KKKPEA+A D
Sbjct: 24 AGVESSKRP-PGSNPGGVLHQRRNLPYSYTTMALAGLAISGAIMYTVMYAKKKPEATATD 83

Query: 62 VAKVTAGVATPENTRPR 79
          VAK   G A PE+T PR
Sbjct: 84 VAKAATGTAKPEDTHPR 99

The following BLAST results are available for this feature:

BLAST of MS002333.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134574.1	4.6e-35	100.00	uncharacterized protein LOC111006810 [Momordica charantia]	[more]
KAA0035091.1	2.1e-27	77.91	putative transmembrane protein [Cucumis melo var. makuwa] >TYJ95987.1 putative t...	[more]
KAG2717864.1	2.9e-21	67.11	hypothetical protein I3760_03G194000 [Carya illinoinensis] >KAG6661827.1 hypothe...	[more]
KAE8126076.1	2.9e-21	69.74	hypothetical protein FH972_020822 [Carpinus fangiana]	[more]
PQP98417.1	8.5e-21	68.83	hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora]	[more]

BLAST of MS002333.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002333.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ44	2.3e-35	100.00	uncharacterized protein LOC111006810 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3BA37	1.0e-27	77.91	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5N6RUE0	1.4e-21	69.74	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020822 PE=4 SV=1	[more]
A0A314Y3C0	4.1e-21	68.83	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_220...	[more]
A0A314XVK0	7.0e-21	68.83	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_321...	[more]

BLAST of MS002333.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31830.1	1.2e-09	44.16	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919:SF7	BNACNNG59810D PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 1..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002333	MS002333	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002333.1-cds	MS002333.1-cds-scaffold30:4187399..4187635	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002333.1	MS002333.1-protein	polypeptide