MS002324.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002324.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 4155346 .. 4155752 (+)
Sequence length	312
RNA-Seq Expression	MS002324.1
Synteny	MS002324.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAATTAGGACTAATAATTTTGCTCCTCATCTCCATTGATCTCTCCCTCCCAATTTGCCATTCAGCTGAAACCAATTTCACCATCAAACCTGAGGATCTCTATAAGCAGCAGCTGAAACAGGGGAGACCTACAAAAGGTAAGAAATCTTATGAAATGTTTTTAAAACAAATCGTGAGAAAAGCTTATATATTGTGCTGTGTTGAATAATTATGATTTCATTTTCTGGTGCAGATTTAGAGGGCGAGAGGAAGGAGAGTGAAGAAACAGGCGCCGGAGCTAAGGCGGGGAAGATGATGAGAGCGAGAGGAGTGTACGGCGGCGCGAGCGACATGCGGCGGGGACACTCGAAGAACGACGCTACCTCTCTACGGATTAAATCAATTTCTTCATCGTTTTGGGAAGTT

mRNA sequence

AGCAAATTAGGACTAATAATTTTGCTCCTCATCTCCATTGATCTCTCCCTCCCAATTTGCCATTCAGCTGAAACCAATTTCACCATCAAACCTGAGGATCTCTATAAGCAGCAGCTGAAACAGGGGAGACCTACAAAAGATTTAGAGGGCGAGAGGAAGGAGAGTGAAGAAACAGGCGCCGGAGCTAAGGCGGGGAAGATGATGAGAGCGAGAGGAGTGTACGGCGGCGCGAGCGACATGCGGCGGGGACACTCGAAGAACGACGCTACCTCTCTACGGATTAAATCAATTTCTTCATCGTTTTGGGAAGTT

Coding sequence (CDS)

AGCAAATTAGGACTAATAATTTTGCTCCTCATCTCCATTGATCTCTCCCTCCCAATTTGCCATTCAGCTGAAACCAATTTCACCATCAAACCTGAGGATCTCTATAAGCAGCAGCTGAAACAGGGGAGACCTACAAAAGATTTAGAGGGCGAGAGGAAGGAGAGTGAAGAAACAGGCGCCGGAGCTAAGGCGGGGAAGATGATGAGAGCGAGAGGAGTGTACGGCGGCGCGAGCGACATGCGGCGGGGACACTCGAAGAACGACGCTACCTCTCTACGGATTAAATCAATTTCTTCATCGTTTTGGGAAGTT

Protein sequence

SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGAGAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV

Homology

[Close]

BLAST of MS002324.1 vs. NCBI nr
Match: XP_022135488.1 (uncharacterized protein LOC111007432 [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 7.7e-46
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA 60
           SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA
Sbjct: 2   SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA 61

Query: 61  GAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           GA AGKMMRARGVYGGASDMRRGHSKNDATSLRIKSI SSFWEV
Sbjct: 62  GATAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSIPSSFWEV 105

[Close]

BLAST of MS002324.1 vs. NCBI nr
Match: KGN65174.1 (hypothetical protein Csa_019558 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-14
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 2   KLGLIILLLISIDL--SLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETG 61
           K GL++L L SI     LP C   ETNFT K +D + +QLKQGRP KD++     SEE  
Sbjct: 2   KKGLLLLFLFSIIFLYLLPFC-LCETNFTTKADD-HNKQLKQGRPRKDVQ----SSEELH 61

Query: 62  AGAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
            GA    +MRA+ VYGGA+D+  GHSKNDA SL IKSISS  W+V
Sbjct: 62  GGASVATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKV 100

[Close]

BLAST of MS002324.1 vs. NCBI nr
Match: KAA0035098.1 (uncharacterized protein E6C27_scaffold57G001730 [Cucumis melo var. makuwa] >TYJ95980.1 uncharacterized protein E5676_scaffold271G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.6e-13
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 2   KLGLIILLLISI--DLSLPICHSAETNFTIKPEDLYKQQLKQGRPTK---DLEGERKESE 61
           K GL+IL L SI     LP C   ETNFT K +D + +QLKQGRP K   DL+G    SE
Sbjct: 2   KKGLLILFLFSILCLYLLPFC-LCETNFTTKADD-HDKQLKQGRPRKGSTDLQG----SE 61

Query: 62  ETGAGAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           E   GA    +MRA+ VYGGA+D+  G SKNDA SLRIKSISS  W+V
Sbjct: 62  ELHGGAAVVTVMRAKAVYGGANDIHHGRSKNDANSLRIKSISSLVWKV 103

[Close]

BLAST of MS002324.1 vs. NCBI nr
Match: XP_022921746.1 (uncharacterized protein LOC111429900 [Cucurbita moschata])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 4   GLIILLLISI--DLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGAG 63
           G  +LLLIS+     LP C S E +FT K  D YK  LKQGRP KDL+    +S++   G
Sbjct: 4   GPFLLLLISLLCLCLLPFCLS-EAHFTNKAYDPYK-HLKQGRPRKDLQ----DSKQINVG 63

Query: 64  AKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           A A K+MRARGVYGG +D+ RGHSKNDA  LRIKS SS  W+V
Sbjct: 64  A-ATKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDV 99

[Close]

BLAST of MS002324.1 vs. NCBI nr
Match: XP_022988599.1 (uncharacterized protein LOC111485797 [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 59/103 (57.28%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 4   GLIILLLISI--DLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGAG 63
           G  +LLLIS+     LP C S E  FT K  D YK  LKQGRP KDL+     SE+   G
Sbjct: 4   GPFLLLLISLLCLCLLPFCLS-EAYFTNKAYDPYK-HLKQGRPRKDLQA----SEQINVG 63

Query: 64  AKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           A A ++MRARGVYGG +D+ RGHSKNDA  LRIKS SS  WEV
Sbjct: 64  A-ATRVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWEV 99

[Close]

BLAST of MS002324.1 vs. ExPASy TrEMBL
Match: A0A6J1C4Y5 (uncharacterized protein LOC111007432 OS=Momordica charantia OX=3673 GN=LOC111007432 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.7e-46
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA 60
           SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA
Sbjct: 2   SKLGLIILLLISIDLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGA 61

Query: 61  GAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           GA AGKMMRARGVYGGASDMRRGHSKNDATSLRIKSI SSFWEV
Sbjct: 62  GATAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSIPSSFWEV 105

[Close]

BLAST of MS002324.1 vs. ExPASy TrEMBL
Match: A0A0A0LW17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257310 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 57/105 (54.29%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 2   KLGLIILLLISIDL--SLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETG 61
           K GL++L L SI     LP C   ETNFT K +D + +QLKQGRP KD++     SEE  
Sbjct: 2   KKGLLLLFLFSIIFLYLLPFC-LCETNFTTKADD-HNKQLKQGRPRKDVQ----SSEELH 61

Query: 62  AGAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
            GA    +MRA+ VYGGA+D+  GHSKNDA SL IKSISS  W+V
Sbjct: 62  GGASVATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKV 100

[Close]

BLAST of MS002324.1 vs. ExPASy TrEMBL
Match: A0A5A7SWW6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00500 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 2   KLGLIILLLISI--DLSLPICHSAETNFTIKPEDLYKQQLKQGRPTK---DLEGERKESE 61
           K GL+IL L SI     LP C   ETNFT K +D + +QLKQGRP K   DL+G    SE
Sbjct: 2   KKGLLILFLFSILCLYLLPFC-LCETNFTTKADD-HDKQLKQGRPRKGSTDLQG----SE 61

Query: 62  ETGAGAKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           E   GA    +MRA+ VYGGA+D+  G SKNDA SLRIKSISS  W+V
Sbjct: 62  ELHGGAAVVTVMRAKAVYGGANDIHHGRSKNDANSLRIKSISSLVWKV 103

[Close]

BLAST of MS002324.1 vs. ExPASy TrEMBL
Match: A0A6J1E284 (uncharacterized protein LOC111429900 OS=Cucurbita moschata OX=3662 GN=LOC111429900 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.4e-13
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 4   GLIILLLISI--DLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGAG 63
           G  +LLLIS+     LP C S E +FT K  D YK  LKQGRP KDL+    +S++   G
Sbjct: 4   GPFLLLLISLLCLCLLPFCLS-EAHFTNKAYDPYK-HLKQGRPRKDLQ----DSKQINVG 63

Query: 64  AKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           A A K+MRARGVYGG +D+ RGHSKNDA  LRIKS SS  W+V
Sbjct: 64  A-ATKVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWDV 99

[Close]

BLAST of MS002324.1 vs. ExPASy TrEMBL
Match: A0A6J1JM10 (uncharacterized protein LOC111485797 OS=Cucurbita maxima OX=3661 GN=LOC111485797 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.1e-13
Identity = 59/103 (57.28%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 4   GLIILLLISI--DLSLPICHSAETNFTIKPEDLYKQQLKQGRPTKDLEGERKESEETGAG 63
           G  +LLLIS+     LP C S E  FT K  D YK  LKQGRP KDL+     SE+   G
Sbjct: 4   GPFLLLLISLLCLCLLPFCLS-EAYFTNKAYDPYK-HLKQGRPRKDLQA----SEQINVG 63

Query: 64  AKAGKMMRARGVYGGASDMRRGHSKNDATSLRIKSISSSFWEV 105
           A A ++MRARGVYGG +D+ RGHSKNDA  LRIKS SS  WEV
Sbjct: 64  A-ATRVMRARGVYGGGNDIHRGHSKNDANPLRIKSTSSLLWEV 99

The following BLAST results are available for this feature:

BLAST of MS002324.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135488.1	7.7e-46	98.08	uncharacterized protein LOC111007432 [Momordica charantia]	[more]
KGN65174.1	4.6e-14	54.29	hypothetical protein Csa_019558 [Cucumis sativus]	[more]
KAA0035098.1	6.6e-13	55.56	uncharacterized protein E6C27_scaffold57G001730 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_022921746.1	1.1e-12	56.31	uncharacterized protein LOC111429900 [Cucurbita moschata]	[more]
XP_022988599.1	1.5e-12	57.28	uncharacterized protein LOC111485797 [Cucurbita maxima]	[more]

BLAST of MS002324.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002324.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4Y5	3.7e-46	98.08	uncharacterized protein LOC111007432 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0LW17	2.2e-14	54.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257310 PE=4 SV=1	[more]
A0A5A7SWW6	3.2e-13	55.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1E284	5.4e-13	56.31	uncharacterized protein LOC111429900 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1JM10	7.1e-13	57.28	uncharacterized protein LOC111485797 OS=Cucurbita maxima OX=3661 GN=LOC111485797...	[more]

BLAST of MS002324.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002324	MS002324	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002324.1-cds	MS002324.1-cds-scaffold30:4155346..4155484	CDS
MS002324.1-cds	MS002324.1-cds-scaffold30:4155580..4155752	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002324.1	MS002324.1-protein	polypeptide