MS002272.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002272.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CONSTANS-like zinc finger protein
Location	scaffold30: 3752976 .. 3753245 (+)
Sequence length	270
RNA-Seq Expression	MS002272.1
Synteny	MS002272.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATGCGACTCCTGCAAGACCGGCCCGGCCGCGGTCTACTGTAGACCCGACTCCGCTTTTCTCTGCCTCACTTGCGACGCCAAAATCCACTGCGCCAATAAGCTCTCCTCACGCCACGACCGCGTCTGGATGTGCGAGGTTTGCGAACAGGCACCCGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGCGTCACCTGCGACGCCGATATTCACTCCGCCAACCCACTAGCTCGCCGCCACGAGCGGGTCCCCGTCGAGCCTTTT

mRNA sequence

CCATGCGACTCCTGCAAGACCGGCCCGGCCGCGGTCTACTGTAGACCCGACTCCGCTTTTCTCTGCCTCACTTGCGACGCCAAAATCCACTGCGCCAATAAGCTCTCCTCACGCCACGACCGCGTCTGGATGTGCGAGGTTTGCGAACAGGCACCCGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGCGTCACCTGCGACGCCGATATTCACTCCGCCAACCCACTAGCTCGCCGCCACGAGCGGGTCCCCGTCGAGCCTTTT

Coding sequence (CDS)

CCATGCGACTCCTGCAAGACCGGCCCGGCCGCGGTCTACTGTAGACCCGACTCCGCTTTTCTCTGCCTCACTTGCGACGCCAAAATCCACTGCGCCAATAAGCTCTCCTCACGCCACGACCGCGTCTGGATGTGCGAGGTTTGCGAACAGGCACCCGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGCGTCACCTGCGACGCCGATATTCACTCCGCCAACCCACTAGCTCGCCGCCACGAGCGGGTCCCCGTCGAGCCTTTT

Protein sequence

PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

Homology

[Close]

BLAST of MS002272.1 vs. NCBI nr
Match: XP_022134642.1 (zinc finger protein CONSTANS-LIKE 5 [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 7.9e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD
Sbjct: 26  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 85

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 86  AAALCVTCDADIHSANPLARRHERVPVEPF 115

[Close]

BLAST of MS002272.1 vs. NCBI nr
Match: XP_008453644.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis melo] >KAA0058321.1 zinc finger protein CONSTANS-LIKE 5-like [Cucumis melo var. makuwa] >TYK09482.1 zinc finger protein CONSTANS-LIKE 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 2.5e-45
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. NCBI nr
Match: XP_011656660.1 (zinc finger protein CONSTANS-LIKE 5 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.5e-45
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. NCBI nr
Match: KAE8653155.1 (hypothetical protein Csa_020132 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.5e-45
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. NCBI nr
Match: KAG6589727.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.0 bits (484), Expect = 4.3e-45
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL+CDAKIHCANK +SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-40
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
          CDSCK+  AA+YCRPD+AFLCL+CD+K+H ANKL+SRH RVWMCEVCEQAPA V CKADA
Sbjct: 6  CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 65

Query: 62 AALCVTCDADIHSANPLARRHERVPVEPF 91
          AALCVTCD DIHSANPLARRHERVPV PF
Sbjct: 66 AALCVTCDRDIHSANPLARRHERVPVTPF 94

[Close]

BLAST of MS002272.1 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-36
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 2  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
          CDSCK+  A ++CR D+AFLC  CD KIH ANKL+SRH+RVW+CEVCEQAPA V CKADA
Sbjct: 8  CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADA 67

Query: 62 AALCVTCDADIHSANPLARRHERVPVEPF 91
          AALCVTCD DIHSANPL+RRHERVP+ PF
Sbjct: 68 AALCVTCDRDIHSANPLSRRHERVPITPF 96

[Close]

BLAST of MS002272.1 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 2   CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
           CD+CK+  AAV+CR DSAFLC+ CD +IH      +RH+RVW+CEVCEQAPA V CKADA
Sbjct: 22  CDACKSVTAAVFCRVDSAFLCIACDTRIHS----FTRHERVWVCEVCEQAPAAVTCKADA 81

Query: 62  AALCVTCDADIHSANPLARRHERVPVEPF 91
           AALCV+CDADIHSANPLA RHERVPVE F
Sbjct: 82  AALCVSCDADIHSANPLASRHERVPVETF 106

[Close]

BLAST of MS002272.1 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.8e-31
Identity = 56/88 (63.64%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 2  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
          CD+C++    VYCR DSA+LC +CDA++H AN+L+SRH+RV +C+ CE+APA   CKADA
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 62 AALCVTCDADIHSANPLARRHERVPVEP 90
          A+LC TCD++IHSANPLARRH+RVP+ P
Sbjct: 72 ASLCTTCDSEIHSANPLARRHQRVPILP 99

[Close]

BLAST of MS002272.1 vs. ExPASy Swiss-Prot
Match: Q96502 (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 2   CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
           CD+C++    VYC  DSA+LC TCDA++H AN+++SRH+RV +C+ CE APA  +CKADA
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75

Query: 62  AALCVTCDADIHSANPLARRHERVPVEP 90
           A+LC  CDA+IHSANPLARRH+RVP+ P
Sbjct: 76  ASLCTACDAEIHSANPLARRHQRVPILP 103

[Close]

BLAST of MS002272.1 vs. ExPASy TrEMBL
Match: A0A6J1C060 (zinc finger protein CONSTANS-LIKE 5 OS=Momordica charantia OX=3673 GN=LOC111006865 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.8e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD
Sbjct: 26  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 85

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 86  AAALCVTCDADIHSANPLARRHERVPVEPF 115

[Close]

BLAST of MS002272.1 vs. ExPASy TrEMBL
Match: A0A5A7UXW5 (Zinc finger protein CONSTANS-LIKE 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00800 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-45
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. ExPASy TrEMBL
Match: A0A0A0LUG1 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_1G420320 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-45
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. ExPASy TrEMBL
Match: A0A1S3BXX9 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucumis melo OX=3656 GN=LOC103494297 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-45
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. ExPASy TrEMBL
Match: A0A6J1E4Y5 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111429984 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.1e-45
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKAD 60
           PCDSCKTGPAAVYCRPDSAFLCL+CDAKIHCANK +SRH+RVWMCEVCEQAPAVVMCKAD
Sbjct: 22  PCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKAD 81

Query: 61  AAALCVTCDADIHSANPLARRHERVPVEPF 91
           AAALCVTCDADIHSANPLARRHERVPVEPF
Sbjct: 82  AAALCVTCDADIHSANPLARRHERVPVEPF 111

[Close]

BLAST of MS002272.1 vs. TAIR 10
Match: AT5G24930.1 (CONSTANS-like 4 )

HSP 1 Score: 165.2 bits (417), Expect = 2.4e-41
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 2   CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
           CDSCK+  AA+YCRPD+AFLCL+CD+K+H ANKL+SRH RVWMCEVCEQAPA V CKADA
Sbjct: 50  CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADA 109

Query: 62  AALCVTCDADIHSANPLARRHERVPVEPF 91
           AALCVTCD DIHSANPLARRHERVPV PF
Sbjct: 110 AALCVTCDRDIHSANPLARRHERVPVTPF 138

[Close]

BLAST of MS002272.1 vs. TAIR 10
Match: AT2G24790.2 (CONSTANS-like 3 )

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-37
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 2  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
          CDSCK+  A ++CR D+AFLC  CD KIH ANKL+SRH+RVW+CEVCEQAPA V CKADA
Sbjct: 8  CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADA 67

Query: 62 AALCVTCDADIHSANPLARRHERVPVEPF 91
          AALCVTCD DIHSANPL+RRHERVP+ PF
Sbjct: 68 AALCVTCDRDIHSANPLSRRHERVPITPF 96

[Close]

BLAST of MS002272.1 vs. TAIR 10
Match: AT2G24790.1 (CONSTANS-like 3 )

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-37
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 2  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
          CDSCK+  A ++CR D+AFLC  CD KIH ANKL+SRH+RVW+CEVCEQAPA V CKADA
Sbjct: 8  CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADA 67

Query: 62 AALCVTCDADIHSANPLARRHERVPVEPF 91
          AALCVTCD DIHSANPL+RRHERVP+ PF
Sbjct: 68 AALCVTCDRDIHSANPLSRRHERVPITPF 96

[Close]

BLAST of MS002272.1 vs. TAIR 10
Match: AT5G57660.1 (CONSTANS-like 5 )

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-34
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 2   CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
           CD+CK+  AAV+CR DSAFLC+ CD +IH      +RH+RVW+CEVCEQAPA V CKADA
Sbjct: 22  CDACKSVTAAVFCRVDSAFLCIACDTRIHS----FTRHERVWVCEVCEQAPAAVTCKADA 81

Query: 62  AALCVTCDADIHSANPLARRHERVPVEPF 91
           AALCV+CDADIHSANPLA RHERVPVE F
Sbjct: 82  AALCVSCDADIHSANPLASRHERVPVETF 106

[Close]

BLAST of MS002272.1 vs. TAIR 10
Match: AT5G15850.1 (CONSTANS-like 1 )

HSP 1 Score: 134.8 bits (338), Expect = 3.4e-32
Identity = 56/88 (63.64%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 2  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADA 61
          CD+C++    VYCR DSA+LC +CDA++H AN+L+SRH+RV +C+ CE+APA   CKADA
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query: 62 AALCVTCDADIHSANPLARRHERVPVEP 90
          A+LC TCD++IHSANPLARRH+RVP+ P
Sbjct: 72 ASLCTTCDSEIHSANPLARRHQRVPILP 99

The following BLAST results are available for this feature:

BLAST of MS002272.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134642.1	7.9e-47	100.00	zinc finger protein CONSTANS-LIKE 5 [Momordica charantia]	[more]
XP_008453644.1	2.5e-45	96.67	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis melo] >KAA0058321.1...	[more]
XP_011656660.1	2.5e-45	96.67	zinc finger protein CONSTANS-LIKE 5 [Cucumis sativus]	[more]
KAE8653155.1	2.5e-45	96.67	hypothetical protein Csa_020132 [Cucumis sativus]	[more]
KAG6589727.1	4.3e-45	95.56	Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of MS002272.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T9	3.3e-40	83.15	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q9SK53	1.7e-36	76.40	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q9FHH8	1.1e-32	73.03	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]
O50055	4.8e-31	63.64	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
Q96502	1.1e-30	62.50	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1...	[more]

BLAST of MS002272.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C060	3.8e-47	100.00	zinc finger protein CONSTANS-LIKE 5 OS=Momordica charantia OX=3673 GN=LOC1110068...	[more]
A0A5A7UXW5	1.2e-45	96.67	Zinc finger protein CONSTANS-LIKE 5-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0LUG1	1.2e-45	96.67	Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_1G420320 PE=3 SV=1	[more]
A0A1S3BXX9	1.2e-45	96.67	zinc finger protein CONSTANS-LIKE 5-like OS=Cucumis melo OX=3656 GN=LOC103494297...	[more]
A0A6J1E4Y5	2.1e-45	95.56	zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of MS002272.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24930.1	2.4e-41	83.15	CONSTANS-like 4	[more]
AT2G24790.2	1.2e-37	76.40	CONSTANS-like 3	[more]
AT2G24790.1	1.2e-37	76.40	CONSTANS-like 3	[more]
AT5G57660.1	8.1e-34	73.03	CONSTANS-like 5	[more]
AT5G15850.1	3.4e-32	63.64	CONSTANS-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 1..44 e-value: 1.5E-6 score: 37.7 coord: 45..87 e-value: 8.5E-11 score: 51.9
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 42..87 e-value: 4.6E-8 score: 33.1
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..44 score: 10.238671
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 40..87 score: 10.87877
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 1..90
None	No IPR available	PANTHER	PTHR31319:SF53	ZINC FINGER PROTEIN CONSTANS-LIKE 5	coord: 1..90
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 1..44 e-value: 5.85288E-15 score: 60.7743
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 45..87 e-value: 4.2494E-12 score: 53.4555

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002272	MS002272	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002272.1-cds	MS002272.1-cds-scaffold30:3752976..3753245	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002272.1	MS002272.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding