MS002248.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002248.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 3610189 .. 3610378 (+)
Sequence length	186
RNA-Seq Expression	MS002248.1
Synteny	MS002248.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGTTTCGGAGCAGGAATCGCCGACAATCCCCGAGTCCCCAAAGCCCTAAAGAATAATAATGTTACAAACACTGTATCGAGCGATGGGCGACGAGGAGGATGCCAGGTTGGCGCGCGTCCAGGTGAATGCTGCGTCAACTTGAGTACTGATTGCACCGCCACTATAATGCCACGTCGCACCCATTTA

mRNA sequence

AAAAGGTTTCGGAGCAGGAATCGCCGACAATCCCCGAGTCCCCAAAGCCCTAAAGAAAATGTTACAAACACTGTATCGAGCGATGGGCGACGAGGAGGATGCCAGGTTGGCGCGCGTCCAGGTGAATGCTGCGTCAACTTGAGTACTGATTGCACCGCCACTATAATGCCACGTCGCACCCATTTA

Coding sequence (CDS)

AAAAGGTTTCGGAGCAGGAATCGCCGACAATCCCCGAGTCCCCAAAGCCCTAAAGAAAATGTTACAAACACTGTATCGAGCGATGGGCGACGAGGAGGATGCCAGGTTGGCGCGCGTCCAGGTGAATGCTGCGTCAACTTGAGTACTGATTGCACCGCCACTATAATGCCACGTCGCACCCATTTA

Protein sequence

KRFRSRNRRQSPSPQSPKENVTNTVSSDGRRGGCQVGARPGECCVNLSTDCTATIMPRRTHL

Homology

[Close]

BLAST of MS002248.1 vs. NCBI nr
Match: KAE8653164.1 (hypothetical protein Csa_020074 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  KRFRSRNRRQSPSPQSPKENVTNTVSSDGRRGGCQVGARPGECCVNLSTDCTATIMPRRT 60
          K FRSRNRRQ  SP+SP+E     VSS+GRRGGCQVGARP      LS DC AT +PR T
Sbjct: 10 KGFRSRNRRQGQSPESPRE---YEVSSNGRRGGCQVGARP-----ILSIDCFATTVPRCT 63

Query: 61 HL 63
          +L
Sbjct: 70 YL 63

[Close]

BLAST of MS002248.1 vs. ExPASy TrEMBL
Match: A0A0A0LU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423080 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  KRFRSRNRRQSPSPQSPKENVTNTVSSDGRRGGCQVGARPGECCVNLSTDCTATIMPRRT 60
          K FRSRNRRQ  SP+SP+E     VSS+GRRGGCQVGARP      LS DC AT +PR T
Sbjct: 10 KGFRSRNRRQGQSPESPRE---YEVSSNGRRGGCQVGARP-----ILSIDCFATTVPRCT 63

Query: 61 HL 63
          +L
Sbjct: 70 YL 63

The following BLAST results are available for this feature:

BLAST of MS002248.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653164.1	3.2e-07	62.90	hypothetical protein Csa_020074 [Cucumis sativus]	[more]

BLAST of MS002248.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002248.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU45	1.6e-07	62.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423080 PE=4 SV=1	[more]

BLAST of MS002248.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002248	MS002248	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002248.1-cds	MS002248.1-cds-scaffold30:3610189..3610245	CDS
MS002248.1-cds	MS002248.1-cds-scaffold30:3610250..3610378	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002248.1	MS002248.1-protein	polypeptide