MS002159.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002159.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nuclear localized protein
Location	scaffold30: 2850697 .. 2853658 (+)
Sequence length	1293
RNA-Seq Expression	MS002159.1
Synteny	MS002159.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCATGGGAAGCTCTTGATCTTGATTACTCCGACGTACATTCTCTCCTCCGCCCTCTGAAGCGCCACCGTAGCCCTCAACCCCTCTCCGCTTCCGAACCCACCGCCGCCACTTCCAGTTCCGCTCTCCACTGCCAATCCCAATCCGATAACCACCAACCGGGTTCGAATTTCTCTACTCAGATTCCAATTTGTCAATCCCGAAGAGTTTTCACTGAAGTAGAGCCCCCGTGTCCCTTCGCTCCATCGTCTTCGCGTCTCATTCCTGGCCCTGCCGGAGCCGTCCAAGCGGCAATGCAGCGTAGAACCCGCGGGGATAGCTGCTTCTATGTCGGCGATGAAGAGCCCGTCCCTACTCAGGAGTATATAAGGAGAGTTATGGAAAACGGTGATGAAGAGGACGATGATTTCGGTGGCAACCAGTGGCTTTGCGCTTTAGATTTTGCCCGCGGCCTAGGTTCTTTTTGTTCTCGGTTTGTTTTGTGACTCGAGGAGTGTGAAATTGTTGAAGACTTAATCCAAGGGTTTTTGTAGGTGCGATGGAGGGTAATGGAGCAGTGTCTGAAACTCCTTTGAGTTCTATCAAGAATGGCTTTAATGCTGAGAAAGTTGCTTTGGTAATTTGTATTCAAACCCTTATTTTCGCTTGTCTGGCGTGAAAAATTGTGGAAGCTAGAGAATGACAAATTCCTGACGTCGCCACCATTTTGATTACGGGAGAGAGATAGAGAACCAACGATATTCAGATGATTATTGCTTAAGACCCATTTAGTGGATCTTTATTCTTATATCAGTGCATCAACTATTGCTAACATTTCTTCACTTTAGCTTCTTGTCGTTGCAAAAATTCAATTAGGGTTTGGTGTTTTCTGTTAATTCTGTTCTGTGTGGCTGCCTTGTTAGGTCGTTGCCATTATCAAATCTTGTACCTCAAATGGTCTGGGTGGTATGATGGTGACTCTAAAGGTTAGATTTTTGAATATACATCTCCCCATACACACAGAAAGTAGCATTCCAAAATTTCAATATTCTGTGGATGTGAAAATGAGCATGAACTTCTGATGCCAGGATCCAACAGGTACAATAGACGCTAGTATTCACCATAGTGTCATTTCCGAGGGAAATTTTGGGAAGGACTTATCTGTTGGTGCAGTTTTAATGTTGAAGAAGGTTTGATTTCATTATTTCCGGCATTTGGGTAAATTTGATTGGTGTGTGGAAATTGAACCCATTGTCTTATTCTGTTCACAATGCTCAGCGTACCATCATTTATCTTCCAGGTTGCTGTATTTTCCCCAACACGCTTTGTACACGTGCTTAATGTAACATCAAGCAACGTTATCAAGGTATGCTTTGCTTTAAGAACTGCACAAAAAGTTAGCAAGCCTTCGTACTAAGGAAGAAACTATTCTGTTATGAAAACTCTGTTTCTAGTCATATATTCATGTGTACTCACTTTTCCTATATGAAAAGTAAGGCCCCGAAAGAAATAAGGAATCATTTCTAGCTTACTGGACAAAAGAGATTTTTGTTTTTTGCACCAATTGTACATTTCCTTTTTGTTGCATCAAGCAACCAATCTGAAGGCATCTGTTGTGACAACTCACAAGAGTTGGACAAGTTGTCAGCTAGTTCTTGTGCTTGTAGACAAACGTCATCTGTGATTGAACAGCTTATGCAGGCGTATAATGATTATATTAAAGAAAAGTTTGACGCTTAGTCTGTTTGACAGGTAAAGGATATTTGACCCCTCAAAAATTTTTGTTTGTTGGTTTAGTACATGCATTTTCATATTTGTACATCCTGCAGGAAAGATAATCGAGTGGTAATTTATCATTGGTAGTGTCAGCAATTATTATTTGTACTGAGCTATGCTTAGGTTGGCGAAATCCGATTCTTGTTGAAGTCAGCATCTTTACCTTTTAATTAGATGCTATGCCTATGACATTAATTCAGCTCGGGTATTAGGTGACCATATAGTTCAGCCATAGTTTATCTAATCCTGCTAGGAATTGTGTTAGATTCCCATAATGAACTTACTCCTAGGACTCTTTGTAAATTAATCTTAGGCTTAGGAAATATGGATGCAATGAAGATATATAGTTACAGAGCAGAATGTATGGGAAATTCTTAAAGATTTCTTGAAATTTATGATGTTCTTTCCCATTTCTAGTTCATGATTTACGTTCATAAGTTGCATAACTTGGGAGCACGCACTTTATCTTTTGTTTGCCACTAACTATTTTTTGCTTATCCTTTATCCCGTAGGTTATTTCTAAGGACAGCGGACCTCATATTGAGCACAGTAATCCTACAGCAATCAGACAGCCTGATTTTATAACTGGAGGTCGACAATATTTTTCATACAAATTCCTGTTTTATCTAAAGCCATATTTATTGTGTATATATCTAGTGGTTTTAGTGGGAAAATAGAAGCTTTTTTCCCCTCATATATGCTTTATTACTGGAACGACTAGGATGAGATGTTTATTTTCAATTATTATCCCTTAACTTTGCAGAAACCATGCCACAGAAGAATTTGTATGTGTCACGCGAAACAACTAAAAATATCATGAACAATTTAAGGCAAAGTTCTAAATCAAGCAATTGCAAAGGAAGTGGAAACAACAGAAACCAACAGACTATCGTCGAGAAAGACAGTGCGGTGATGAACCCGGGTATGTCGAAGGGAATCTCAAATTTGAGTTTCAACACTTTCCTGGTTGACCAAGATCAAGAAACAGGGCAAGATGAATACATCAACCGTGGTATGGGTACAGATACAAGCGAACTATCACAGGCCAAAGAAAATGATGTTGCTGCAGCCAACGCTACACAAGTTCCACATAATCAAGAAGCTGAAACAATTAATGAAGTGAAAAAGGCTGACACACGAACACAAGGACCGTTACTCCCACAATGGACAGATGAGCAGTTGGATGAGCTCTTTGTATTCGAC

mRNA sequence

ATGGAACCATGGGAAGCTCTTGATCTTGATTACTCCGACGTACATTCTCTCCTCCGCCCTCTGAAGCGCCACCGTAGCCCTCAACCCCTCTCCGCTTCCGAACCCACCGCCGCCACTTCCAGTTCCGCTCTCCACTGCCAATCCCAATCCGATAACCACCAACCGGGTTCGAATTTCTCTACTCAGATTCCAATTTGTCAATCCCGAAGAGTTTTCACTGAAGTAGAGCCCCCGTGTCCCTTCGCTCCATCGTCTTCGCGTCTCATTCCTGGCCCTGCCGGAGCCGTCCAAGCGGCAATGCAGCGTAGAACCCGCGGGGATAGCTGCTTCTATGTCGGCGATGAAGAGCCCGTCCCTACTCAGGAGTATATAAGGAGAGTTATGGAAAACGGTGATGAAGAGGACGATGATTTCGGTGGCAACCAGTGGCTTTGCGCTTTAGATTTTGCCCGCGGCCTAGGTGCGATGGAGGGTAATGGAGCAGTGTCTGAAACTCCTTTGAGTTCTATCAAGAATGGCTTTAATGCTGAGAAAGTTGCTTTGGTCGTTGCCATTATCAAATCTTGTACCTCAAATGGTCTGGGTGGTATGATGGTGACTCTAAAGGATCCAACAGGTACAATAGACGCTAGTATTCACCATAGTGTCATTTCCGAGGGAAATTTTGGGAAGGACTTATCTGTTGGTGCAGTTTTAATGTTGAAGAAGGTTGCTGTATTTTCCCCAACACGCTTTGTACACGTGCTTAATGTAACATCAAGCAACGTTATCAAGGTTATTTCTAAGGACAGCGGACCTCATATTGAGCACAGTAATCCTACAGCAATCAGACAGCCTGATTTTATAACTGGAGAAACCATGCCACAGAAGAATTTGTATGTGTCACGCGAAACAACTAAAAATATCATGAACAATTTAAGGCAAAGTTCTAAATCAAGCAATTGCAAAGGAAGTGGAAACAACAGAAACCAACAGACTATCGTCGAGAAAGACAGTGCGGTGATGAACCCGGGTATGTCGAAGGGAATCTCAAATTTGAGTTTCAACACTTTCCTGGTTGACCAAGATCAAGAAACAGGGCAAGATGAATACATCAACCGTGGTATGGGTACAGATACAAGCGAACTATCACAGGCCAAAGAAAATGATGTTGCTGCAGCCAACGCTACACAAGTTCCACATAATCAAGAAGCTGAAACAATTAATGAAGTGAAAAAGGCTGACACACGAACACAAGGACCGTTACTCCCACAATGGACAGATGAGCAGTTGGATGAGCTCTTTGTATTCGAC

Coding sequence (CDS)

ATGGAACCATGGGAAGCTCTTGATCTTGATTACTCCGACGTACATTCTCTCCTCCGCCCTCTGAAGCGCCACCGTAGCCCTCAACCCCTCTCCGCTTCCGAACCCACCGCCGCCACTTCCAGTTCCGCTCTCCACTGCCAATCCCAATCCGATAACCACCAACCGGGTTCGAATTTCTCTACTCAGATTCCAATTTGTCAATCCCGAAGAGTTTTCACTGAAGTAGAGCCCCCGTGTCCCTTCGCTCCATCGTCTTCGCGTCTCATTCCTGGCCCTGCCGGAGCCGTCCAAGCGGCAATGCAGCGTAGAACCCGCGGGGATAGCTGCTTCTATGTCGGCGATGAAGAGCCCGTCCCTACTCAGGAGTATATAAGGAGAGTTATGGAAAACGGTGATGAAGAGGACGATGATTTCGGTGGCAACCAGTGGCTTTGCGCTTTAGATTTTGCCCGCGGCCTAGGTGCGATGGAGGGTAATGGAGCAGTGTCTGAAACTCCTTTGAGTTCTATCAAGAATGGCTTTAATGCTGAGAAAGTTGCTTTGGTCGTTGCCATTATCAAATCTTGTACCTCAAATGGTCTGGGTGGTATGATGGTGACTCTAAAGGATCCAACAGGTACAATAGACGCTAGTATTCACCATAGTGTCATTTCCGAGGGAAATTTTGGGAAGGACTTATCTGTTGGTGCAGTTTTAATGTTGAAGAAGGTTGCTGTATTTTCCCCAACACGCTTTGTACACGTGCTTAATGTAACATCAAGCAACGTTATCAAGGTTATTTCTAAGGACAGCGGACCTCATATTGAGCACAGTAATCCTACAGCAATCAGACAGCCTGATTTTATAACTGGAGAAACCATGCCACAGAAGAATTTGTATGTGTCACGCGAAACAACTAAAAATATCATGAACAATTTAAGGCAAAGTTCTAAATCAAGCAATTGCAAAGGAAGTGGAAACAACAGAAACCAACAGACTATCGTCGAGAAAGACAGTGCGGTGATGAACCCGGGTATGTCGAAGGGAATCTCAAATTTGAGTTTCAACACTTTCCTGGTTGACCAAGATCAAGAAACAGGGCAAGATGAATACATCAACCGTGGTATGGGTACAGATACAAGCGAACTATCACAGGCCAAAGAAAATGATGTTGCTGCAGCCAACGCTACACAAGTTCCACATAATCAAGAAGCTGAAACAATTAATGAAGTGAAAAAGGCTGACACACGAACACAAGGACCGTTACTCCCACAATGGACAGATGAGCAGTTGGATGAGCTCTTTGTATTCGAC

Protein sequence

MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSALHCQSQSDNHQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD

Homology

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BLAST of MS002159.1 vs. NCBI nr
Match: XP_022134685.1 (uncharacterized protein LOC111006894 [Momordica charantia])

HSP 1 Score: 651.4 bits (1679), Expect = 5.6e-183
Identity = 331/332 (99.70%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 100 MQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGN 159
           MQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGN
Sbjct: 1   MQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGN 60

Query: 160 GAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISE 219
           GAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISE
Sbjct: 61  GAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISE 120

Query: 220 GNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQP 279
           GNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEH+NPTAIRQP
Sbjct: 121 GNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHNNPTAIRQP 180

Query: 280 DFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGM 339
           DFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGM
Sbjct: 181 DFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGM 240

Query: 340 SKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAE 399
           SKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAE
Sbjct: 241 SKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAE 300

Query: 400 TINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
           TINEVKKADTRTQGPLLPQWTDEQLDELFVFD
Sbjct: 301 TINEVKKADTRTQGPLLPQWTDEQLDELFVFD 332

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BLAST of MS002159.1 vs. NCBI nr
Match: XP_038879213.1 (uncharacterized protein LOC120071176 isoform X1 [Benincasa hispida])

HSP 1 Score: 578.9 bits (1491), Expect = 3.5e-161
Identity = 324/465 (69.68%), Postives = 366/465 (78.71%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSAL-----------HCQSQ 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLS     AATS  +L             Q +
Sbjct: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLS----PAATSPLSLPLLETCYRAPFQSQPE 60

Query: 61  SDNHQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSC 120
           SDNHQ  SNF +Q  IC+S+R+ TE E PCP + +SSR+IPGPAGAVQAAMQRRTRGD+ 
Sbjct: 61  SDNHQSESNFLSQTSICRSQRISTESEVPCP-SGASSRIIPGPAGAVQAAMQRRTRGDNS 120

Query: 121 FYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGL-GAMEGNGAVSETPLS 180
            YVGDEEPVPTQEYIRRV+ENGDEEDDDF  + W+CALDF RGL GAM+GNGA+SETPL+
Sbjct: 121 -YVGDEEPVPTQEYIRRVIENGDEEDDDFNRSPWVCALDFVRGLVGAMDGNGALSETPLN 180

Query: 181 SIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSV 240
           SIKNGFN EKV LVVAIIKSCTSNGLGGMMV LKDPTGTIDASIHH VI+EGNFGKD+SV
Sbjct: 181 SIKNGFNDEKVDLVVAIIKSCTSNGLGGMMVALKDPTGTIDASIHHRVIAEGNFGKDISV 240

Query: 241 GAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET-- 300
           GAVL+L+KVAVFSPTRFVHVLNVT SN++KVISKDSG  I+H+ PTAIRQ D ITG+T  
Sbjct: 241 GAVLILQKVAVFSPTRFVHVLNVTRSNIVKVISKDSGSLIKHNKPTAIRQSDPITGDTSG 300

Query: 301 ---MPQKNLYVSRETTKNIMNNLRQ-----------------SSKSSNCKGSGNNRNQQT 360
              MPQ N+ VSRETT+NIMNNLRQ                 ++ SSN KG+G  RN+ +
Sbjct: 301 ELHMPQMNVDVSRETTQNIMNNLRQTKLRGNELGDLQTGKGNAASSSNSKGNGTIRNRPS 360

Query: 361 IVEKDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAA 420
           +VEK+ AV++ G SKG S++   T  VDQDQETG DE IN  MGTD  ELSQAKEN  AA
Sbjct: 361 VVEKERAVIDVGTSKGTSSVGRYTVDVDQDQETGLDEPINHPMGTDPGELSQAKENG-AA 420

Query: 421 ANATQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
           +N  QVP+NQEAETINE+KK  TRTQ P+LPQWTDEQLDELFVFD
Sbjct: 421 SNTAQVPNNQEAETINEMKKTVTRTQEPVLPQWTDEQLDELFVFD 458

[Close]

BLAST of MS002159.1 vs. NCBI nr
Match: XP_022988449.1 (uncharacterized protein LOC111485693, partial [Cucurbita maxima])

HSP 1 Score: 539.3 bits (1388), Expect = 3.1e-149
Identity = 308/462 (66.67%), Postives = 349/462 (75.54%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSALHC--------QSQSDN 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSA+ PT+  S   L          QSQ  N
Sbjct: 33  MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSAA-PTSTLSLPLLETCSLSPSQPQSQPFN 92

Query: 61  HQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYV 120
               S+FS+Q PIC+S+R+ +E+E PCP + +S R+IPGPAGAVQAAMQRRTRGD  FY 
Sbjct: 93  DLSESDFSSQNPICRSQRISSELESPCP-SGASLRIIPGPAGAVQAAMQRRTRGDKSFYG 152

Query: 121 GDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKN 180
           GDEEPVPTQEYIRRV+ENGDEED DF GN W+CALDF RGLGAM+G G ++ETPLSSIKN
Sbjct: 153 GDEEPVPTQEYIRRVIENGDEEDGDFNGNPWVCALDFVRGLGAMDGKGDLTETPLSSIKN 212

Query: 181 GFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVL 240
            FNAEKVALVVAIIKSCTSN LGGMMV LKDPTGTIDASIHH VISEGNFGKDLSVGAVL
Sbjct: 213 AFNAEKVALVVAIIKSCTSNSLGGMMVALKDPTGTIDASIHHRVISEGNFGKDLSVGAVL 272

Query: 241 MLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET-----M 300
           +L+KVAVFS TR VHVLNVT+SNV+KVISKDSGP I+ ++PTAI +PD    ET     +
Sbjct: 273 ILQKVAVFSSTRSVHVLNVTASNVVKVISKDSGPPIKLNSPTAIIRPDSRIEETHGEVHI 332

Query: 301 PQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIVE 360
            Q N  VSRE T+NIMNNLRQ+SK                  S N KG+G N N+Q +  
Sbjct: 333 RQMNFDVSREKTQNIMNNLRQNSKLRRNGLGDLQTGKGNAASSINWKGNGTNSNRQFV-- 392

Query: 361 KDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANA 420
                 +   SKG S++  NT LVDQDQ+TG DE IN  MGTD+ ELSQAKEN  AA+N 
Sbjct: 393 ------DLSTSKGTSSVGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKENG-AASNT 452

Query: 421 TQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
            + P+NQEAE INE+K A TRTQ PLLPQWT+EQLDELF FD
Sbjct: 453 ARAPNNQEAEKINEMKTA-TRTQEPLLPQWTEEQLDELFAFD 482

[Close]

BLAST of MS002159.1 vs. NCBI nr
Match: XP_023516131.1 (uncharacterized protein C17orf53 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 538.1 bits (1385), Expect = 6.9e-149
Identity = 308/462 (66.67%), Postives = 347/462 (75.11%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSALHC--------QSQSDN 60
           MEPWEALDLDYSDVHSLLRPLKRHRSP+ LSA+ PT+  S   L          QSQ  N
Sbjct: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPRSLSAA-PTSTLSLPLLETCSLSPSQPQSQPCN 60

Query: 61  HQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYV 120
               S+FS+Q PIC+S+R+ TE+E PCP + +S R+IPGPAGAVQAAMQRRTRG+  FYV
Sbjct: 61  DLFESDFSSQNPICRSQRISTELESPCP-SGASLRIIPGPAGAVQAAMQRRTRGEKSFYV 120

Query: 121 GDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKN 180
           GDEEPVPTQEYIRRV+ENGDEED DF GN W+CALDF RGLGAM+G G ++ETPLSSIKN
Sbjct: 121 GDEEPVPTQEYIRRVIENGDEEDGDFNGNPWVCALDFVRGLGAMDGRGDLTETPLSSIKN 180

Query: 181 GFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVL 240
            FNAEKVALVVAIIKSCTSN LGGMMV LKDPTGTIDASIHH VISEGNFGKDLSVGAVL
Sbjct: 181 AFNAEKVALVVAIIKSCTSNSLGGMMVALKDPTGTIDASIHHRVISEGNFGKDLSVGAVL 240

Query: 241 MLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET-----M 300
           +L+KVAVFSPTR VHVLNVT+SNV+KVISKDSGP I+ ++PTAI QPD  T ET     +
Sbjct: 241 ILQKVAVFSPTRSVHVLNVTTSNVVKVISKDSGPPIKLNSPTAIIQPDSRTEETHGEVHI 300

Query: 301 PQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIVE 360
           PQ NL VSRE T+NIMNNLRQ+SK                  S N KG+G N N+Q +  
Sbjct: 301 PQMNLDVSREKTQNIMNNLRQNSKLRRNGLGDLQTGKGNAASSINWKGNGTNSNRQFV-- 360

Query: 361 KDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANA 420
                 +   SKG S++  NT LVDQDQ+TG DE IN  MGTD+ ELSQAKE   AA+N 
Sbjct: 361 ------DLSTSKGTSSMGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKETG-AASNT 420

Query: 421 TQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
            Q P+NQEAE I       TRTQ PLLPQWT+EQLDELF FD
Sbjct: 421 AQAPNNQEAEKI-------TRTQEPLLPQWTEEQLDELFAFD 444

[Close]

BLAST of MS002159.1 vs. NCBI nr
Match: KAG6589636.1 (Homologous recombination OB-fold protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 537.0 bits (1382), Expect = 1.5e-148
Identity = 308/462 (66.67%), Postives = 346/462 (74.89%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSALHC--------QSQSDN 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSA+ PT+  S   L          QSQ  N
Sbjct: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSAA-PTSTLSLPLLETCSLSPSQPQSQPFN 60

Query: 61  HQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYV 120
               S+FS+Q PIC+S+R+ TE+E PCP + +S R+IPGPAGAVQAAMQRRTRGD  FYV
Sbjct: 61  DLSESDFSSQNPICRSQRISTELESPCP-SGASLRIIPGPAGAVQAAMQRRTRGDKSFYV 120

Query: 121 GDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKN 180
           GDEEPVPTQEYIRRV+ENGDEED DF GN W+CALDF RGL AM+G G ++ETPLSSIKN
Sbjct: 121 GDEEPVPTQEYIRRVIENGDEEDGDFNGNPWVCALDFVRGLAAMDGKGDLTETPLSSIKN 180

Query: 181 GFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVL 240
            FNAEKVALVVAIIKSCTSN LGGM+V LKDPTGTIDASIHH VISEGNFGKDLSVGAVL
Sbjct: 181 AFNAEKVALVVAIIKSCTSNSLGGMVVALKDPTGTIDASIHHRVISEGNFGKDLSVGAVL 240

Query: 241 MLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET-----M 300
           +L+KVAVFSPTR VHVLNVT+SNV+KVISKDSGP I+ ++ TAI QPD  T ET     +
Sbjct: 241 ILQKVAVFSPTRSVHVLNVTTSNVVKVISKDSGPPIKLNSTTAIIQPDSRTEETHGEAHI 300

Query: 301 PQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIVE 360
           PQ NL VSRE T+NIM NLRQ+SK                  S N KG+G  RN+Q +  
Sbjct: 301 PQMNLDVSREKTQNIMKNLRQNSKLRRNGVGDLQTGKGNAASSINWKGNGTIRNRQFV-- 360

Query: 361 KDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANA 420
                 +   SKG S++  NT LVDQDQ+TG DE IN  MGTD+ ELSQAKEN  AA+N 
Sbjct: 361 ------DLSTSKGTSSVGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKENG-AASNT 420

Query: 421 TQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
            Q P+NQEAE I       TRTQ PLLPQWT+EQLDELF FD
Sbjct: 421 AQAPNNQEAEKI-------TRTQEPLLPQWTEEQLDELFAFD 444

[Close]

BLAST of MS002159.1 vs. ExPASy Swiss-Prot
Match: Q8N3J3 (Homologous recombination OB-fold protein OS=Homo sapiens OX=9606 GN=HROB PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-09
Identity = 59/228 (25.88%), Postives = 98/228 (42.98%), Query Frame = 0


Query: 57  SNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYVGDEE 116
           +N   Q+    SR   T  +P  P   + +R  PGPAG +      R+  D    +    
Sbjct: 369 TNHLVQLVTAASR---TPQQPTHPSTRAKTRRFPGPAGILPHQQSGRSLED---IMVSAP 428

Query: 117 PVPTQEYIRR-----VMENGDEEDDDFGGNQWL--------------CALDFARGLGAME 176
             PT   + +     V  +    ++DFG   WL              C L     +  + 
Sbjct: 429 QTPTHGALAKFQTEIVASSQASVEEDFGRGPWLTMKSTLGLDERDPSCFLCTYSIVMVLR 488

Query: 177 GNGAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVI 236
              A+ + P + + N         +  +IKS T + +   +V  KDPTG +  ++H  ++
Sbjct: 489 KQAALKQLPRNKVPN---------MAVMIKSLTRSTMDASVV-FKDPTGEMQGTVHRLLL 548

Query: 237 SEGNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSG 266
                  +L  G+VL+LK++ VFSP+   H LNVT +N++ + S DSG
Sbjct: 549 E--TCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSG 578

[Close]

BLAST of MS002159.1 vs. ExPASy Swiss-Prot
Match: Q6GX86 (Homologous recombination OB-fold protein OS=Rattus norvegicus OX=10116 GN=Hrob PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.5e-09
Identity = 74/271 (27.31%), Postives = 116/271 (42.80%), Query Frame = 0


Query: 33  SEPTAATSSSALHCQSQSDNHQPGSN----FST-------------QIPICQSRRV---- 92
           S P    SSSA  C+  S +  P S+    FST             Q P+  +  V    
Sbjct: 267 SGPQCPHSSSAAFCRGPSPSRAPVSSVESPFSTPRSTSTTVTQPALQTPVVTNHLVQLVT 326

Query: 93  ---FTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYVGDEEP-VPTQEYIRR- 152
               T  +P  P   + +R  PGPAG     +  +  G++   +    P  PT   + + 
Sbjct: 327 ATNRTPQQPSRPSIRAKTRRFPGPAG----LLPHQHSGENLEEIMVSTPQTPTHGALAKF 386

Query: 153 ----VMENGDEEDDDFGGNQWLCALDFARGLGAMEGN--------GAVSETPLSSIKNGF 212
               V  +    ++DFG   W   L     LG  EG+          V     +++K   
Sbjct: 387 QTEIVTSSQGSVEEDFGRGPW---LTMKSALGLDEGDPTCFLYTYSIVMVLRKAALKQ-L 446

Query: 213 NAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVLML 266
              KV  +  +IKS T + +   +V  KDPTG +  ++H  ++       +L  G+VL+L
Sbjct: 447 PRNKVPNMAVMIKSLTRSTMDASVV-FKDPTGEMLGTVHRVLLE--THQNELKPGSVLLL 506

[Close]

BLAST of MS002159.1 vs. ExPASy Swiss-Prot
Match: Q32P12 (Homologous recombination OB-fold protein OS=Mus musculus OX=10090 GN=Hrob PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-07
Identity = 66/258 (25.58%), Postives = 112/258 (43.41%), Query Frame = 0


Query: 29  PLSASEPTAATSSSALHCQSQSDNHQPGSNFSTQIPICQSRRV-------FTEVEPPCPF 88
           PLS+  P ++  S      +  +   P +  + Q P+  +  V        T  +P  P 
Sbjct: 300 PLSSRAPVSSVESPV---STPRNTSTPVTQPALQTPVVTNHLVQLVTATNRTPQQPSRPS 359

Query: 89  APSSSRLIPGPAGAVQAAMQRRTRGDSCFYVGDEEP-VPTQEYIRR-----VMENGDEED 148
             + +R  PGPAG     +  +  G++   +    P  PT   + +        +    +
Sbjct: 360 IRAKTRRFPGPAG----LLPHQHSGENLEEIMVSTPQTPTHGALAKFQTEIATSSQGSVE 419

Query: 149 DDFGGNQWLCALDFARGLGAMEGN--------GAVSETPLSSIKNGFNAEKVALVVAIIK 208
           +DFG   W   L     LG  EG+          V     +++K      KV  +  +IK
Sbjct: 420 EDFGQGPW---LTMKSALGLDEGDPTCFLYTYSIVMVLRKAALKQ-LPRNKVPNMAVMIK 479

Query: 209 SCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVLMLKKVAVFSPTRFVH 266
           S T + +   +V  KDPTG +  ++H  ++       +L  G+VL+LK++ VFSP+   H
Sbjct: 480 SLTRSTMDASVV-FKDPTGEMLGTVHRVLLE--THQSELRPGSVLLLKQIGVFSPSLRNH 539

[Close]

BLAST of MS002159.1 vs. ExPASy TrEMBL
Match: A0A6J1BZ04 (uncharacterized protein LOC111006894 OS=Momordica charantia OX=3673 GN=LOC111006894 PE=4 SV=1)

HSP 1 Score: 651.4 bits (1679), Expect = 2.7e-183
Identity = 331/332 (99.70%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 100 MQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGN 159
           MQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGN
Sbjct: 1   MQRRTRGDSCFYVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGN 60

Query: 160 GAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISE 219
           GAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISE
Sbjct: 61  GAVSETPLSSIKNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISE 120

Query: 220 GNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQP 279
           GNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEH+NPTAIRQP
Sbjct: 121 GNFGKDLSVGAVLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHNNPTAIRQP 180

Query: 280 DFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGM 339
           DFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGM
Sbjct: 181 DFITGETMPQKNLYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKDSAVMNPGM 240

Query: 340 SKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAE 399
           SKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAE
Sbjct: 241 SKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANATQVPHNQEAE 300

Query: 400 TINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
           TINEVKKADTRTQGPLLPQWTDEQLDELFVFD
Sbjct: 301 TINEVKKADTRTQGPLLPQWTDEQLDELFVFD 332

[Close]

BLAST of MS002159.1 vs. ExPASy TrEMBL
Match: A0A6J1JLK0 (uncharacterized protein LOC111485693 OS=Cucurbita maxima OX=3661 GN=LOC111485693 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.5e-149
Identity = 308/462 (66.67%), Postives = 349/462 (75.54%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSALHC--------QSQSDN 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSA+ PT+  S   L          QSQ  N
Sbjct: 33  MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSAA-PTSTLSLPLLETCSLSPSQPQSQPFN 92

Query: 61  HQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYV 120
               S+FS+Q PIC+S+R+ +E+E PCP + +S R+IPGPAGAVQAAMQRRTRGD  FY 
Sbjct: 93  DLSESDFSSQNPICRSQRISSELESPCP-SGASLRIIPGPAGAVQAAMQRRTRGDKSFYG 152

Query: 121 GDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKN 180
           GDEEPVPTQEYIRRV+ENGDEED DF GN W+CALDF RGLGAM+G G ++ETPLSSIKN
Sbjct: 153 GDEEPVPTQEYIRRVIENGDEEDGDFNGNPWVCALDFVRGLGAMDGKGDLTETPLSSIKN 212

Query: 181 GFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVL 240
            FNAEKVALVVAIIKSCTSN LGGMMV LKDPTGTIDASIHH VISEGNFGKDLSVGAVL
Sbjct: 213 AFNAEKVALVVAIIKSCTSNSLGGMMVALKDPTGTIDASIHHRVISEGNFGKDLSVGAVL 272

Query: 241 MLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET-----M 300
           +L+KVAVFS TR VHVLNVT+SNV+KVISKDSGP I+ ++PTAI +PD    ET     +
Sbjct: 273 ILQKVAVFSSTRSVHVLNVTASNVVKVISKDSGPPIKLNSPTAIIRPDSRIEETHGEVHI 332

Query: 301 PQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIVE 360
            Q N  VSRE T+NIMNNLRQ+SK                  S N KG+G N N+Q +  
Sbjct: 333 RQMNFDVSREKTQNIMNNLRQNSKLRRNGLGDLQTGKGNAASSINWKGNGTNSNRQFV-- 392

Query: 361 KDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANA 420
                 +   SKG S++  NT LVDQDQ+TG DE IN  MGTD+ ELSQAKEN  AA+N 
Sbjct: 393 ------DLSTSKGTSSVGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKENG-AASNT 452

Query: 421 TQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
            + P+NQEAE INE+K A TRTQ PLLPQWT+EQLDELF FD
Sbjct: 453 ARAPNNQEAEKINEMKTA-TRTQEPLLPQWTEEQLDELFAFD 482

[Close]

BLAST of MS002159.1 vs. ExPASy TrEMBL
Match: A0A0A0LSW2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025090 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 1.3e-148
Identity = 308/463 (66.52%), Postives = 349/463 (75.38%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSAL---------HCQSQSD 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLS S  + +T S  L           Q + D
Sbjct: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSPSSASTSTLSLPLLETCSLPPSQSQPRVD 60

Query: 61  NHQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGD-SCF 120
           N Q   + S Q  IC+S+R+ TE+E  CP + +S+R+IPGPAGAVQ AMQRRTRGD SC 
Sbjct: 61  NLQSELSLSPQASICRSQRISTELEASCP-SGASTRIIPGPAGAVQVAMQRRTRGDHSC- 120

Query: 121 YVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSI 180
            VGDEEPVPTQEYIRRV+ENGDEEDDDF  + W+CALDF RG+GAMEGNGAVSETPL+SI
Sbjct: 121 -VGDEEPVPTQEYIRRVIENGDEEDDDFNRSAWVCALDFVRGIGAMEGNGAVSETPLNSI 180

Query: 181 KNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGA 240
           KNGF  EKV  VVAIIKSCTSNGLGGMMV LKDPTGTIDASIHH VISEGNFGKDLSVGA
Sbjct: 181 KNGFIDEKVGFVVAIIKSCTSNGLGGMMVALKDPTGTIDASIHHRVISEGNFGKDLSVGA 240

Query: 241 VLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET---- 300
           VL+L+KVAVFSPTR VHVLNVT SNV+KVISKDSGP I+H++PTAIRQ D ITG+T    
Sbjct: 241 VLILQKVAVFSPTRSVHVLNVTRSNVVKVISKDSGPLIKHNSPTAIRQSDSITGDTHGVH 300

Query: 301 MPQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIV 360
           MPQ N  VSRE+T+NIMNNL+Q+SK                  S N K +    N+Q+I 
Sbjct: 301 MPQMNSDVSRESTQNIMNNLKQNSKLRGNGLDDLQTGKGIAASSRNWKWNETVGNRQSI- 360

Query: 361 EKDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAAN 420
           EK+  V++ G+SKG  ++  NT  VDQDQ  G DE IN  MGTD      AKEN  AA+N
Sbjct: 361 EKEGGVIDVGISKGTPSVGCNTVHVDQDQGRGSDEPINHPMGTD-----PAKENG-AASN 420

Query: 421 ATQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
             Q+P+NQE ETINE+KK  TRTQ PLLPQWTDEQLDELFVFD
Sbjct: 421 TVQLPNNQEVETINEMKKTVTRTQQPLLPQWTDEQLDELFVFD 453

[Close]

BLAST of MS002159.1 vs. ExPASy TrEMBL
Match: A0A6J1E1C3 (uncharacterized protein C17orf53 homolog OS=Cucurbita moschata OX=3662 GN=LOC111429888 PE=4 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 6.3e-148
Identity = 304/462 (65.80%), Postives = 347/462 (75.11%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSALHC--------QSQSDN 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSA+ PT+  S   L          QSQS N
Sbjct: 33  MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSAA-PTSTLSLPLLETCSRSPSQPQSQSFN 92

Query: 61  HQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYV 120
               S+FS+Q PIC+++R+ TE+E PCP + +S R+IPGPAGAVQAAMQRRTRG+  FYV
Sbjct: 93  DLFESDFSSQNPICRTQRISTELESPCP-SGASLRIIPGPAGAVQAAMQRRTRGEKSFYV 152

Query: 121 GDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKN 180
           GDEEP+PTQEYIRRV+ENGD+EDDDF GN W+CALDF RGL AM+G G ++ETPLSSIKN
Sbjct: 153 GDEEPLPTQEYIRRVIENGDDEDDDFNGNPWVCALDFVRGLAAMDGKGDLTETPLSSIKN 212

Query: 181 GFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVL 240
            FNAEKVALVVAIIKSCTSN LGGMMV LKDPTGTIDASIHH VISEGNFGKDLSVGAVL
Sbjct: 213 AFNAEKVALVVAIIKSCTSNSLGGMMVALKDPTGTIDASIHHRVISEGNFGKDLSVGAVL 272

Query: 241 MLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET-----M 300
           +L+KVAVFSPTR VHVLNVT+SNV+KVISKDSGP I+ ++PTAI +PD    E+     +
Sbjct: 273 ILQKVAVFSPTRSVHVLNVTTSNVVKVISKDSGPPIKLNSPTAIIRPDSRIEESHGEVHI 332

Query: 301 PQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTIVE 360
           PQ N  VSRE T+NIM NLRQ+SK                  S N KG+G N N+Q +  
Sbjct: 333 PQMNFDVSRERTQNIMKNLRQNSKLRMNGVGDLQTGKGNAASSINWKGNGTNGNRQFV-- 392

Query: 361 KDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAANA 420
                 +   SKG S++  NT LVDQDQ+TG DE IN  MGTD+ ELSQAKEN  AA+N 
Sbjct: 393 ------DLSTSKGTSSVGCNTLLVDQDQQTGLDEPINHPMGTDSGELSQAKENG-AASNT 452

Query: 421 TQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
            Q P+NQEAE I       TRTQ PLLPQWT+EQLDELF FD
Sbjct: 453 AQAPNNQEAEKI-------TRTQEPLLPQWTEEQLDELFAFD 476

[Close]

BLAST of MS002159.1 vs. ExPASy TrEMBL
Match: A0A1S3BVT0 (uncharacterized protein C17orf53 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494183 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.5e-144
Identity = 301/464 (64.87%), Postives = 344/464 (74.14%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSASEPTAATSSSAL---------HCQSQSD 60
           MEPWEALDLDYSDVHSLLRPLKRHRSPQPLS S    +T S  L           Q + D
Sbjct: 1   MEPWEALDLDYSDVHSLLRPLKRHRSPQPLSPSSTATSTLSLPLLETCSLPPSKSQPRVD 60

Query: 61  NHQPGSNFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGD-SCF 120
           N Q   + S Q  +C+S+R+ T +E  CP + +S+R+IPGPAGAVQ AMQRRTRGD SC 
Sbjct: 61  NLQSELSLSPQASLCRSQRISTGLEASCP-SGASTRIIPGPAGAVQVAMQRRTRGDHSC- 120

Query: 121 YVGDEEPVPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSI 180
            VGDEEPVPTQEYIRRVMENGDEEDDDF  + W+CALDF R +GAMEGNGAVSETPL+SI
Sbjct: 121 -VGDEEPVPTQEYIRRVMENGDEEDDDFNRSPWVCALDFVRSIGAMEGNGAVSETPLNSI 180

Query: 181 KNGFNAEKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGA 240
           KNGF  EKV LVVAIIKSCTSNGLGGMMV LKDPTGTIDASIHH VISEG FGKDLSVGA
Sbjct: 181 KNGFIDEKVGLVVAIIKSCTSNGLGGMMVALKDPTGTIDASIHHRVISEGIFGKDLSVGA 240

Query: 241 VLMLKKVAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGET---- 300
           VL+L+KVAVFSPTR VHVLNVT SNV+KVISKDSGP I+H++PT IR  DFITG+T    
Sbjct: 241 VLILQKVAVFSPTRSVHVLNVTRSNVVKVISKDSGPLIKHNSPTPIRWSDFITGDTHGEV 300

Query: 301 -MPQKNLYVSRETTKNIMNNLRQSSK------------------SSNCKGSGNNRNQQTI 360
            M Q N  VSRE+T+NIMNNLRQSSK                  SSN   +    ++Q++
Sbjct: 301 HMQQMNSDVSRESTQNIMNNLRQSSKLRRNRLGDLRTGKGGAASSSNWNCNETVGSRQSV 360

Query: 361 VEKDSAVMNPGMSKGISNLSFNTFLVDQDQETGQDEYINRGMGTDTSELSQAKENDVAAA 420
           VEK+  V++ G+SK   ++  N   VDQDQ  G DE IN  MGTD++     KEN  AA+
Sbjct: 361 VEKEGGVIDVGISKRTPSVGCNIVYVDQDQGRGSDEPINHPMGTDST-----KENG-AAS 420

Query: 421 NATQVPHNQEAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
           +  Q+P+NQEAETINE+KK  TRTQ PLLPQWTDEQLDELF FD
Sbjct: 421 STAQLPNNQEAETINEMKKTVTRTQQPLLPQWTDEQLDELFEFD 455

[Close]

BLAST of MS002159.1 vs. TAIR 10
Match: AT1G48580.1 (unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 216.9 bits (551), Expect = 3.3e-56
Identity = 163/471 (34.61%), Postives = 240/471 (50.96%), Query Frame = 0


Query: 1   MEPWEALDLDYSDVHSLLRPLKRH---RSPQPLSASEPTAATSSSALHCQSQSDNHQPGS 60
           ++ WEALDL  S++ S LRP KR    RS QP +  +   A  +S       + NH+P  
Sbjct: 7   VDQWEALDLGDSELPSFLRPCKRKSPTRSLQPHAQQQNPKAGFNS-------NTNHRP-- 66

Query: 61  NFSTQIPICQSRRVFTEVEPPCPFAPSSSRLIPGPAGAVQAAMQRRTRGDSCFYVGDEEP 120
                +  C S   F E          S  LIPGPAG VQ A++R+   D   +    EP
Sbjct: 67  ----TLRRCSSPDKFLE-------ESYSRSLIPGPAGVVQVAIRRKMNKDPKSFNEHGEP 126

Query: 121 VPTQEYIRRVMENGDEEDDDFGGNQWLCALDFARGLGAMEGNGAVSETPLSSIKNGFNA- 180
           +PTQE++R+  E  D ED DF  + W+  +D+ R  G +   G    TP+S IK   ++ 
Sbjct: 127 IPTQEFLRKAAEEPDWEDKDFSEDPWVSTVDYIRSEGLLSNGGNAIGTPVSEIKRRCDSW 186

Query: 181 EKVALVVAIIKSCTSNGLGGMMVTLKDPTGTIDASIHHSVISEGNFGKDLSVGAVLMLKK 240
            KV  VVAI+K+CT NGLG +MVTLKDPTGTIDAS+H  VISE  FG+D+ VGAV++LK+
Sbjct: 187 GKVDQVVAIVKTCTPNGLGDVMVTLKDPTGTIDASVHRKVISESEFGRDIRVGAVVILKQ 246

Query: 241 VAVFSPTRFVHVLNVTSSNVIKVISKDSGPHIEHSNPTAIRQPDFITGETMPQKN----- 300
           VAV +P+R    LN+T  N+ KVI+KD+ P + + N + +   + ++   +P++N     
Sbjct: 247 VAVCAPSRSSTYLNITLKNISKVITKDT-PVLPNQNDSEMSAKNHVSVNGLPKQNDSEMS 306

Query: 301 --------------------LYVSRETTKNIMNNLRQSSKSSNCKGSGNNRNQQTIVEKD 360
                                 V + TT+ IMNNLRQ++K S+              E  
Sbjct: 307 GKNLVPVNENEEYLRLQPNVFSVEQSTTQGIMNNLRQNAKGSSEALHDIEMVDINPAEGS 366

Query: 361 SAVMNPGMSKGISNLSFNTFLV---DQDQETGQDEYINRGMGTDTSE-LSQAKENDVAAA 420
            +    G++K    +     L+   D   +T Q  Y +    TD ++ +  AK+  +  +
Sbjct: 367 KSSPKKGVTKNHCEVRMEQTLLGKHDSISQTEQQLYEDVATETDIADCIRPAKQ--IRRS 426

Query: 421 NATQVPHNQ-------EAETINEVKKADTRTQGPLLPQWTDEQLDELFVFD 432
           + +Q+   +       E  T   + K+ +      LPQWTDEQL+ELF FD
Sbjct: 427 SQSQIDEQESVMGNPDEVTTRTTIHKSQSMASTISLPQWTDEQLEELFAFD 454

The following BLAST results are available for this feature:

BLAST of MS002159.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134685.1	5.6e-183	99.70	uncharacterized protein LOC111006894 [Momordica charantia]	[more]
XP_038879213.1	3.5e-161	69.68	uncharacterized protein LOC120071176 isoform X1 [Benincasa hispida]	[more]
XP_022988449.1	3.1e-149	66.67	uncharacterized protein LOC111485693, partial [Cucurbita maxima]	[more]
XP_023516131.1	6.9e-149	66.67	uncharacterized protein C17orf53 [Cucurbita pepo subsp. pepo]	[more]
KAG6589636.1	1.5e-148	66.67	Homologous recombination OB-fold protein, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of MS002159.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8N3J3	2.2e-09	25.88	Homologous recombination OB-fold protein OS=Homo sapiens OX=9606 GN=HROB PE=1 SV...	[more]
Q6GX86	8.5e-09	27.31	Homologous recombination OB-fold protein OS=Rattus norvegicus OX=10116 GN=Hrob P...	[more]
Q32P12	2.1e-07	25.58	Homologous recombination OB-fold protein OS=Mus musculus OX=10090 GN=Hrob PE=1 S...	[more]

BLAST of MS002159.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ04	2.7e-183	99.70	uncharacterized protein LOC111006894 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JLK0	1.5e-149	66.67	uncharacterized protein LOC111485693 OS=Cucurbita maxima OX=3661 GN=LOC111485693...	[more]
A0A0A0LSW2	1.3e-148	66.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025090 PE=4 SV=1	[more]
A0A6J1E1C3	6.3e-148	65.80	uncharacterized protein C17orf53 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BVT0	1.5e-144	64.87	uncharacterized protein C17orf53 homolog isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of MS002159.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48580.1	3.3e-56	34.61	unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028045	Homologous recombination OB-fold protein	PFAM	PF15072	DUF4539	coord: 177..263 e-value: 7.8E-31 score: 105.9
IPR028045	Homologous recombination OB-fold protein	PANTHER	PTHR14523	UNCHARACTERIZED PROTEIN C17ORF53 HOMOLOG	coord: 1..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002159	MS002159	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002159.1-cds	MS002159.1-cds-scaffold30:2850697..2851156	CDS
MS002159.1-cds	MS002159.1-cds-scaffold30:2851234..2851316	CDS
MS002159.1-cds	MS002159.1-cds-scaffold30:2851603..2851665	CDS
MS002159.1-cds	MS002159.1-cds-scaffold30:2851768..2851869	CDS
MS002159.1-cds	MS002159.1-cds-scaffold30:2851980..2852045	CDS
MS002159.1-cds	MS002159.1-cds-scaffold30:2852968..2853046	CDS
MS002159.1-cds	MS002159.1-cds-scaffold30:2853219..2853658	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002159.1	MS002159.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000725	recombinational repair