MS002021.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002021.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
Location	scaffold30: 1845587 .. 1846038 (+)
Sequence length	258
RNA-Seq Expression	MS002021.1
Synteny	MS002021.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTACTTCCCTCATTCTGGAAAGTTGCAAAAGAATGGCTCGTATCGGACCATTAAGCATCCGCAGACAGTTCATATACATCCTAGCTCAGGGTTGGCTCAGGTAAGCTGTGTTCTTTTAGCTCCAATTTGGCAGCAGAACTCACTTTCACAAAAGGAAGAATCTAGCTTATATGGTTTTCATTCTTTTGATTGACGACCTCAGGTTCTTCCAAGATGGGTTGTATACCATGAATTGGTATGCACCTCCAAGGAGTATATGAGACAGGTGATAATACTCTCTGCCCTCTAATTAACCAATTTTAGTTCATCTTCTTCCTTCTTTTGCACTAATATGTTATCAATCAATTGAATCCACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTACCAGCTCAAGGACGTGGAAGATTGTATGCTCTCTCTCTCTCTC

mRNA sequence

GGTTACTTCCCTCATTCTGGAAAGTTGCAAAAGAATGGCTCGTATCGGACCATTAAGCATCCGCAGACAGTTCATATACATCCTAGCTCAGGGTTGGCTCAGGTTCTTCCAAGATGGGTTGTATACCATGAATTGGTATGCACCTCCAAGGAGTATATGAGACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTACCAGCTCAAGGACGTGGAAGATTGTATGCTCTCTCTCTCTCTC

Coding sequence (CDS)

GGTTACTTCCCTCATTCTGGAAAGTTGCAAAAGAATGGCTCGTATCGGACCATTAAGCATCCGCAGACAGTTCATATACATCCTAGCTCAGGGTTGGCTCAGGTTCTTCCAAGATGGGTTGTATACCATGAATTGGTATGCACCTCCAAGGAGTATATGAGACAGGTAACGGAATTGAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTTCTACCAGCTCAAGGACGTGGAAGATTGTATGCTCTCTCTCTCTCTC

Protein sequence

GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDCMLSLSL

Homology

[Close]

BLAST of MS002021.1 vs. NCBI nr
Match: XP_022134868.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
           GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 596 GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 655

Query: 61  PEWLVEIAPHFYQLKDVED 80
           PEWLVEIAPHFYQLKDVED
Sbjct: 656 PEWLVEIAPHFYQLKDVED 674

[Close]

BLAST of MS002021.1 vs. NCBI nr
Match: XP_022134864.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Momordica charantia] >XP_022134865.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Momordica charantia] >XP_022134866.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 1.5e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 965  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 1024

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWLVEIAPHFYQLKDVED
Sbjct: 1025 PEWLVEIAPHFYQLKDVED 1043

[Close]

BLAST of MS002021.1 vs. NCBI nr
Match: XP_011660328.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis sativus] >KGN63716.1 hypothetical protein Csa_013602 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 9.9e-39
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            GYFPHS KLQKNGSYRT+KHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 956  GYFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 1015

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWLVEIAPHFYQLKDVED
Sbjct: 1016 PEWLVEIAPHFYQLKDVED 1034

[Close]

BLAST of MS002021.1 vs. NCBI nr
Match: XP_021803566.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like, partial [Prunus avium])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1   GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
           G+FPHS KLQKNGSYRT+KHPQTVHIHPSSGL+QVLPRWV+YHELV T+KEYMRQVTELK
Sbjct: 39  GFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELK 98

Query: 61  PEWLVEIAPHFYQLKDVEDCMLSLSL 87
           PEWLVEIAPH+YQ+KDVEDC +SLSL
Sbjct: 99  PEWLVEIAPHYYQMKDVEDCKISLSL 124

[Close]

BLAST of MS002021.1 vs. NCBI nr
Match: XP_038879655.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879656.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879657.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879658.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879659.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879660.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPHS KLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 953  GFFPHSAKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 1012

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWLVEIAPHFYQLKDVED
Sbjct: 1013 PEWLVEIAPHFYQLKDVED 1031

[Close]

BLAST of MS002021.1 vs. ExPASy Swiss-Prot
Match: Q8VY00 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thaliana OX=3702 GN=ESP3 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-38
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYHELV TSKEYMRQVTELK
Sbjct: 951  GFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELK 1010

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWL+E+APH+YQLKDVED
Sbjct: 1011 PEWLIELAPHYYQLKDVED 1029

[Close]

BLAST of MS002021.1 vs. ExPASy Swiss-Prot
Match: F4IJV4 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsis thaliana OX=3702 GN=MEE29 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-38
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYH+LV TSKEYMRQVTELK
Sbjct: 951  GFFPHTAKLQKNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELK 1010

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWL+EIAPH+YQLKDVED
Sbjct: 1011 PEWLIEIAPHYYQLKDVED 1029

[Close]

BLAST of MS002021.1 vs. ExPASy Swiss-Prot
Match: F4JMJ3 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8 OS=Arabidopsis thaliana OX=3702 GN=At4g16680 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-30
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLP-RWVVYHELVCTSKEYMRQVTEL 60
           G+FPHS KLQKNGSYR +K PQTV++HP+SGL    P +W+VYHELV T+KEYMR  TE+
Sbjct: 767 GFFPHSAKLQKNGSYRRVKEPQTVYVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTTEM 826

Query: 61  KPEWLVEIAPHFYQLKDVED 80
           KPEWL+EIAPH+Y+LKD+ED
Sbjct: 827 KPEWLIEIAPHYYKLKDIED 846

[Close]

BLAST of MS002021.1 vs. ExPASy Swiss-Prot
Match: Q54MH3 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum OX=44689 GN=dhx16 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-22
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+F +S KL+K+G +RT KH Q+V IHPSS L Q  P+WVVYHELV T+KE+MRQ+ E++
Sbjct: 1013 GFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQ 1072

Query: 61   PEWLVEIAPHFYQLKDVED 80
              WL EIAPH Y+ KDV D
Sbjct: 1073 SSWLHEIAPHIYKEKDVND 1091

[Close]

BLAST of MS002021.1 vs. ExPASy Swiss-Prot
Match: O60231 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens OX=9606 GN=DHX16 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-21
Identity = 44/79 (55.70%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            GYF H+ +L ++G YRT+K  QTV IHP+S L +  PRW++YHELV T+KE+MRQV E++
Sbjct: 946  GYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIE 1005

Query: 61   PEWLVEIAPHFYQLKDVED 80
              WL+E+APH+Y+ K++ED
Sbjct: 1006 SSWLLEVAPHYYKAKELED 1023

[Close]

BLAST of MS002021.1 vs. ExPASy TrEMBL
Match: A0A6J1BZI7 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007026 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.4e-40
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 965  GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 1024

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWLVEIAPHFYQLKDVED
Sbjct: 1025 PEWLVEIAPHFYQLKDVED 1043

[Close]

BLAST of MS002021.1 vs. ExPASy TrEMBL
Match: A0A6J1C379 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007026 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.4e-40
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
           GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 596 GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 655

Query: 61  PEWLVEIAPHFYQLKDVED 80
           PEWLVEIAPHFYQLKDVED
Sbjct: 656 PEWLVEIAPHFYQLKDVED 674

[Close]

BLAST of MS002021.1 vs. ExPASy TrEMBL
Match: A0A0A0LUM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012660 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.8e-39
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            GYFPHS KLQKNGSYRT+KHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 956  GYFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 1015

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWLVEIAPHFYQLKDVED
Sbjct: 1016 PEWLVEIAPHFYQLKDVED 1034

[Close]

BLAST of MS002021.1 vs. ExPASy TrEMBL
Match: A0A6P5RR94 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like OS=Prunus avium OX=42229 GN=LOC110747767 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.2e-39
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1   GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
           G+FPHS KLQKNGSYRT+KHPQTVHIHPSSGL+QVLPRWV+YHELV T+KEYMRQVTELK
Sbjct: 39  GFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELK 98

Query: 61  PEWLVEIAPHFYQLKDVEDCMLSLSL 87
           PEWLVEIAPH+YQ+KDVEDC +SLSL
Sbjct: 99  PEWLVEIAPHYYQMKDVEDCKISLSL 124

[Close]

BLAST of MS002021.1 vs. ExPASy TrEMBL
Match: A0A1S3BVU3 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Cucumis melo OX=3656 GN=LOC103494032 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPHS KLQKNGSYRT+KHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK
Sbjct: 954  GFFPHSAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 1013

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWLVEIAPHFYQLKDVED
Sbjct: 1014 PEWLVEIAPHFYQLKDVED 1032

[Close]

BLAST of MS002021.1 vs. TAIR 10
Match: AT1G32490.1 (RNA helicase family protein )

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-39
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYHELV TSKEYMRQVTELK
Sbjct: 951  GFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELK 1010

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWL+E+APH+YQLKDVED
Sbjct: 1011 PEWLIELAPHYYQLKDVED 1029

[Close]

BLAST of MS002021.1 vs. TAIR 10
Match: AT1G32490.2 (RNA helicase family protein )

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-39
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYHELV TSKEYMRQVTELK
Sbjct: 941  GFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELK 1000

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWL+E+APH+YQLKDVED
Sbjct: 1001 PEWLIELAPHYYQLKDVED 1019

[Close]

BLAST of MS002021.1 vs. TAIR 10
Match: AT2G35340.1 (helicase domain-containing protein )

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-39
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+FPH+ KLQKNGSYRT+KHPQTVHIHP+SGL+QVLPRWVVYH+LV TSKEYMRQVTELK
Sbjct: 951  GFFPHTAKLQKNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELK 1010

Query: 61   PEWLVEIAPHFYQLKDVED 80
            PEWL+EIAPH+YQLKDVED
Sbjct: 1011 PEWLIEIAPHYYQLKDVED 1029

[Close]

BLAST of MS002021.1 vs. TAIR 10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative )

HSP 1 Score: 90.1 bits (222), Expect = 9.2e-19
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1    GYFPHSGKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELK 60
            G+F H  +      YRT+   Q V+IHPSS L Q  P WV+YH+LV T+KEYMR+VT + 
Sbjct: 1060 GFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVID 1119

Query: 61   PEWLVEIAPHFYQLKD 77
            P+WLVE+AP F+++ D
Sbjct: 1120 PKWLVELAPRFFKVSD 1135

[Close]

BLAST of MS002021.1 vs. TAIR 10
Match: AT4G18465.1 (RNA helicase family protein )

HSP 1 Score: 84.7 bits (208), Expect = 3.9e-17
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   GYFPHSGKLQ--KNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTE 60
           G+F ++ +L+   NG Y+TI+  + V+IHPSS L +V P+WVVY  +V T ++YMR V  
Sbjct: 613 GFFANACRLEPHSNGVYKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIVSTERQYMRNVVT 672

Query: 61  LKPEWLVEIAPHFYQ 74
           + P WL E+APHFYQ
Sbjct: 673 INPSWLTEVAPHFYQ 687

The following BLAST results are available for this feature:

BLAST of MS002021.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134868.1	1.5e-39	100.00	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2 [Momordica ...	[more]
XP_022134864.1	1.5e-39	100.00	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Momordica ...	[more]
XP_011660328.1	9.9e-39	97.47	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis sativus] >KGN...	[more]
XP_021803566.1	1.3e-38	87.21	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like, partial [Prunus ...	[more]
XP_038879655.1	2.2e-38	97.47	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >X...	[more]

BLAST of MS002021.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY00	3.0e-38	87.34	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thalian...	[more]
F4IJV4	3.9e-38	87.34	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsi...	[more]
F4JMJ3	8.7e-30	70.00	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8 OS=Arabidopsi...	[more]
Q54MH3	2.3e-22	60.76	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostel...	[more]
O60231	1.1e-21	55.70	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens OX=960...	[more]

BLAST of MS002021.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZI7	7.4e-40	100.00	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 OS=Momordic...	[more]
A0A6J1C379	7.4e-40	100.00	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2 OS=Momordic...	[more]
A0A0A0LUM2	4.8e-39	97.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012660 PE=4 SV=1	[more]
A0A6P5RR94	6.2e-39	87.21	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like OS=Prunus avium O...	[more]
A0A1S3BVU3	1.4e-38	96.20	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Cucumis melo OX=365...	[more]

BLAST of MS002021.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32490.1	2.1e-39	87.34	RNA helicase family protein	[more]
AT1G32490.2	2.1e-39	87.34	RNA helicase family protein	[more]
AT2G35340.1	2.8e-39	87.34	helicase domain-containing protein	[more]
AT3G26560.1	9.2e-19	51.32	ATP-dependent RNA helicase, putative	[more]
AT4G18465.1	3.9e-17	49.33	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011709	Domain of unknown function DUF1605	PFAM	PF07717	OB_NTP_bind	coord: 1..70 e-value: 2.9E-18 score: 66.0
None	No IPR available	PANTHER	PTHR18934:SF215	PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH1-LIKE	coord: 1..79
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 1..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002021	MS002021	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002021.1-cds	MS002021.1-cds-scaffold30:1845587..1845688	CDS
MS002021.1-cds	MS002021.1-cds-scaffold30:1845791..1845853	CDS
MS002021.1-cds	MS002021.1-cds-scaffold30:1845946..1846038	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002021.1	MS002021.1-protein	polypeptide