MS001988.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001988.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HVA22-like protein
Location	scaffold30: 1497340 .. 1498666 (-)
Sequence length	465
RNA-Seq Expression	MS001988.1
Synteny	MS001988.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTATTTGGCAGATATGCATCAGTTAGAGCCATTGAAACAAAGTCTCCTGTGGACGATCAGCAATGGCTTACTTACTGGATTCTATATTCTATGCTCACCCTCTTTGAGCTTACATTTGCCAAAGTTCTCGAATGGTAAAATTTCTACATTAGTTTAGAAATTGCACACTGCTTGTTTTCTCATTTTGCCTTGAGGTTTTCAAATTGCAAAAGAAGGCAGTTACAAATCTATGTATTGCCTCGTGGTTAATCTGCTAGAGATCATGACTTGGCATTTCAAATCACATATGGTTATGATGGAATAATTTGCACATAGATGTTGCTGCTTTTTTTGGTCCAATTTTAAAAATGACGTATTGATATTTATGTATATTGTGCTCTTTTACTTAGCTGCATCCGACCTTAAAACCTAGTTGTGTTATCTTGCCTTGTCCTGGATGTTTGGTAAGATTTATATTTTAAAAATTTTCTGAGTCTGCTTGCTATGGTCTTTTTCTTACTTCCTTTTTTCTTTGAAGTTCATTTTATTTTAGCTTATGATTCTCATAAAAGCATGATTCAAGTTTTCATCTTGTATTTCATATACTTTTTAATTTTGAAGTTCTTGACCCAATCCTTTAATGAAGGTTTACTCCTACAATAGTATGCTGATATGTGATTAGAATTTAGAGCTATATGTTATTGTCCATCATGATAAGTATAGATGTAAGGGAAATCAGAATTCTGTAGACTACTCCCTCTGTCAAATGTTGTGGTTGGTTAACTTCTTAGGTATAGGACAGAGTTAGAACTGGCTAAAACTGATGAGTTTCCTTTTTGCTCCCTTAAATCTTTACAATAGGATCCCTATCTGGCCATATGCAAAGTTGATTTTATCATGCTGGTTGGTCATTCCATACTTCAGTGGTGCTGCATATGTGTACGAGCATTTCGTCAGGCCGCTTTTCACCAACAAACAGACGGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGATGACATCCTAACTGCTGCAGAGAAGTACATTGCTGAAAATGGGACCGAAGACCTCCAAAATATCATAAACAGGGTATACATTCTGACTAACTTTACAGTCTATGGTTGGTTTTCACAAAGAAAACAAAGCAAAAACCGCATTTGCTTGCTTTAGAACAATTTTGAACTGAGTGATTATATGAATCGCAATCGATAGCAACATTGAGTGTTTTTTGATTTGTTCCTGTAGGCTGATAAGGCTCAGGCAAGTAATCGTTACATGAGCTATTCTGAGGGCCACAGCCACGACCACGACCACGACGAGTATTGGCAC

mRNA sequence

TTGCTATTTGGCAGATATGCATCAGTTAGAGCCATTGAAACAAAGTCTCCTGTGGACGATCAGCAATGGCTTACTTACTGGATTCTATATTCTATGCTCACCCTCTTTGAGCTTACATTTGCCAAAGTTCTCGAATGGATCCCTATCTGGCCATATGCAAAGTTGATTTTATCATGCTGGTTGGTCATTCCATACTTCAGTGGTGCTGCATATGTGTACGAGCATTTCGTCAGGCCGCTTTTCACCAACAAACAGACGGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGATGACATCCTAACTGCTGCAGAGAAGTACATTGCTGAAAATGGGACCGAAGACCTCCAAAATATCATAAACAGGGCTGATAAGGCTCAGGCAAGTAATCGTTACATGAGCTATTCTGAGGGCCACAGCCACGACCACGACCACGACGAGTATTGGCAC

Coding sequence (CDS)

TTGCTATTTGGCAGATATGCATCAGTTAGAGCCATTGAAACAAAGTCTCCTGTGGACGATCAGCAATGGCTTACTTACTGGATTCTATATTCTATGCTCACCCTCTTTGAGCTTACATTTGCCAAAGTTCTCGAATGGATCCCTATCTGGCCATATGCAAAGTTGATTTTATCATGCTGGTTGGTCATTCCATACTTCAGTGGTGCTGCATATGTGTACGAGCATTTCGTCAGGCCGCTTTTCACCAACAAACAGACGGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGATGACATCCTAACTGCTGCAGAGAAGTACATTGCTGAAAATGGGACCGAAGACCTCCAAAATATCATAAACAGGGCTGATAAGGCTCAGGCAAGTAATCGTTACATGAGCTATTCTGAGGGCCACAGCCACGACCACGACCACGACGAGTATTGGCAC

Protein sequence

LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCWLVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTEDLQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH

Homology

[Close]

BLAST of MS001988.1 vs. NCBI nr
Match: XP_022135543.1 (HVA22-like protein a [Momordica charantia])

HSP 1 Score: 311.6 bits (797), Expect = 3.8e-81
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSK DDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKSDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH 156
           LQN+INRADKAQASNRYMSYSEGHSHDHDHDEYWH
Sbjct: 146 LQNLINRADKAQASNRYMSYSEGHSHDHDHDEYWH 180

[Close]

BLAST of MS001988.1 vs. NCBI nr
Match: KAA0057935.1 (HVA22-like protein a [Cucumis melo var. makuwa] >TYJ98622.1 HVA22-like protein a [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 3.7e-76
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHD-EYWH 156
           LQNIINRADKA+ SNRYMSY+E H HDHD++ +YWH
Sbjct: 146 LQNIINRADKARTSNRYMSYTENHDHDHDYNHDYWH 181

[Close]

BLAST of MS001988.1 vs. NCBI nr
Match: XP_008453193.1 (PREDICTED: HVA22-like protein a [Cucumis melo] >XP_008453194.1 PREDICTED: HVA22-like protein a [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 4.8e-76
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH 156
           LQNIINRADKA+ SNRYMSY+E H HD++HD YWH
Sbjct: 146 LQNIINRADKARTSNRYMSYTENHDHDYNHD-YWH 179

[Close]

BLAST of MS001988.1 vs. NCBI nr
Match: XP_022987204.1 (HVA22-like protein a [Cucurbita maxima])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKS VDDQQWLTYWILYSMLTLFELTF KVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSHVDDQQWLTYWILYSMLTLFELTFTKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH 156
           LQNIINRADKA+ SNRYMSYSEG  HDHDH EYWH
Sbjct: 146 LQNIINRADKARTSNRYMSYSEGLDHDHDH-EYWH 179

[Close]

BLAST of MS001988.1 vs. NCBI nr
Match: XP_004138159.1 (HVA22-like protein a [Cucumis sativus] >KGN63661.1 hypothetical protein Csa_014222 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 6.9e-75
Identity = 141/160 (88.12%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAK+LEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKLLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTE 
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTEG 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHD-----EYWH 156
           LQNIINRADKA+ SNRYMSY+E H  DHDHD     +YWH
Sbjct: 146 LQNIINRADKARTSNRYMSYTENHDQDHDHDHDYNHDYWH 185

[Close]

BLAST of MS001988.1 vs. ExPASy Swiss-Prot
Match: Q9S7V4 (HVA22-like protein a OS=Arabidopsis thaliana OX=3702 GN=HVA22A PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.0e-54
Identity = 97/152 (63.82%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASV+AIET+S  DD+QWLTYW+LYS+LTL ELTFAK++EW+PIW Y KLIL+CW
Sbjct: 26  LVYPLYASVQAIETQSHADDKQWLTYWVLYSLLTLIELTFAKLIEWLPIWSYMKLILTCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRP+F N +++NIWYVPK  D F KPDD+LTAAEKYIAENG + 
Sbjct: 86  LVIPYFSGAAYVYEHFVRPVFVNPRSINIWYVPKKMDIFRKPDDVLTAAEKYIAENGPDA 145

Query: 121 LQNIINRADKAQASNRY------MSYSEGHSH 147
            + I++RADK++  N++        Y EG+ +
Sbjct: 146 FEKILSRADKSKRYNKHEYESYETMYGEGYQY 177

[Close]

BLAST of MS001988.1 vs. ExPASy Swiss-Prot
Match: Q9S784 (HVA22-like protein c OS=Arabidopsis thaliana OX=3702 GN=HVA22C PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.4e-38
Identity = 79/150 (52.67%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASV+AIET+S  +D+QWLTYW+LY++++LFELTF+K LEW PIWPY KL   CW
Sbjct: 28  LVYPLYASVKAIETRSLPEDEQWLTYWVLYALISLFELTFSKPLEWFPIWPYMKLFGICW 87

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQ--TVNIWYVPKMK-DFFSK--PDDILTAAEKYIAE 120
           LV+P F+GA ++Y+HF+RP + + Q  T  IWYVP  K +FF K   DDILTAAEKY+ +
Sbjct: 88  LVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPHKKFNFFPKRDDDDILTAAEKYMEQ 147

Query: 121 NGTEDLQNIINRADKAQASNRYMSYSEGHS 146
           +GTE  + +I + D         SY  G S
Sbjct: 148 HGTEAFERMIVKKD---------SYERGRS 168

[Close]

BLAST of MS001988.1 vs. ExPASy Swiss-Prot
Match: Q9SYX7 (HVA22-like protein b OS=Arabidopsis thaliana OX=3702 GN=HVA22B PE=2 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-32
Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIE++S  DD+QWLTYW LYS++ LFELTF ++LEWIP++PYAKL L+ W
Sbjct: 26  LVYPLYASVRAIESRSHGDDKQWLTYWALYSLIKLFELTFFRLLEWIPLYPYAKLALTSW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LV+P  +GAAY+YEH+VR    +  TVN+WYVP  KD     DD+   A K+   N +  
Sbjct: 86  LVLPGMNGAAYLYEHYVRSFLLSPHTVNVWYVPAKKD-----DDLGATAGKFTPVNDSGA 145

Query: 121 LQNIINRADKAQASNRYMSYS 142
            Q  I        S +Y+ +S
Sbjct: 146 PQEKI--VSSVDTSAKYVGHS 159

[Close]

BLAST of MS001988.1 vs. ExPASy Swiss-Prot
Match: Q682H0 (HVA22-like protein f OS=Arabidopsis thaliana OX=3702 GN=HVA22F PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
          LL+  YAS RAIE+ + +DDQQWLTYWI+YS++T+FEL+  +VL W+P WPY KL+   W
Sbjct: 21 LLYPLYASFRAIESPTMLDDQQWLTYWIIYSLITIFELSVWRVLAWLPFWPYLKLLFCMW 80

Query: 61 LVIPYFSGAAYVYEHFVR 79
          LV+P FSGAAY+Y +FVR
Sbjct: 81 LVLPMFSGAAYIYSNFVR 98

[Close]

BLAST of MS001988.1 vs. ExPASy Swiss-Prot
Match: Q9FED2 (HVA22-like protein e OS=Arabidopsis thaliana OX=3702 GN=HVA22E PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.8e-21
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           LL+  YASV AIE+ S VDD+QWL YWILYS LTL EL    +LEWIPIW  AKL+   W
Sbjct: 21  LLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIWYTAKLVFVAW 80

Query: 61  LVIPYFSGAAYVYEHFVRPLF 82
           LV+P F GAA++Y   VR  F
Sbjct: 81  LVLPQFRGAAFIYNKVVREQF 101

[Close]

BLAST of MS001988.1 vs. ExPASy TrEMBL
Match: A0A6J1C536 (HVA22-like protein OS=Momordica charantia OX=3673 GN=LOC111007471 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.8e-81
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSK DDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKSDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH 156
           LQN+INRADKAQASNRYMSYSEGHSHDHDHDEYWH
Sbjct: 146 LQNLINRADKAQASNRYMSYSEGHSHDHDHDEYWH 180

[Close]

BLAST of MS001988.1 vs. ExPASy TrEMBL
Match: A0A5A7UWG1 (HVA22-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002450 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.8e-76
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHD-EYWH 156
           LQNIINRADKA+ SNRYMSY+E H HDHD++ +YWH
Sbjct: 146 LQNIINRADKARTSNRYMSYTENHDHDHDYNHDYWH 181

[Close]

BLAST of MS001988.1 vs. ExPASy TrEMBL
Match: A0A1S3BWS9 (HVA22-like protein OS=Cucumis melo OX=3656 GN=LOC103493983 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH 156
           LQNIINRADKA+ SNRYMSY+E H HD++HD YWH
Sbjct: 146 LQNIINRADKARTSNRYMSYTENHDHDYNHD-YWH 179

[Close]

BLAST of MS001988.1 vs. ExPASy TrEMBL
Match: A0A6J1JI83 (HVA22-like protein OS=Cucurbita maxima OX=3661 GN=LOC111484825 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.8e-76
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKS VDDQQWLTYWILYSMLTLFELTF KVLEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSHVDDQQWLTYWILYSMLTLFELTFTKVLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHDEYWH 156
           LQNIINRADKA+ SNRYMSYSEG  HDHDH EYWH
Sbjct: 146 LQNIINRADKARTSNRYMSYSEGLDHDHDH-EYWH 179

[Close]

BLAST of MS001988.1 vs. ExPASy TrEMBL
Match: A0A0A0LUH0 (HVA22-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G009650 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.3e-75
Identity = 141/160 (88.12%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAK+LEWIPIWPYAKLILSCW
Sbjct: 26  LVYPLYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKLLEWIPIWPYAKLILSCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRPLF NKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTE 
Sbjct: 86  LVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTEG 145

Query: 121 LQNIINRADKAQASNRYMSYSEGHSHDHDHD-----EYWH 156
           LQNIINRADKA+ SNRYMSY+E H  DHDHD     +YWH
Sbjct: 146 LQNIINRADKARTSNRYMSYTENHDQDHDHDHDYNHDYWH 185

[Close]

BLAST of MS001988.1 vs. TAIR 10
Match: AT1G74520.1 (HVA22 homologue A )

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-55
Identity = 97/152 (63.82%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASV+AIET+S  DD+QWLTYW+LYS+LTL ELTFAK++EW+PIW Y KLIL+CW
Sbjct: 26  LVYPLYASVQAIETQSHADDKQWLTYWVLYSLLTLIELTFAKLIEWLPIWSYMKLILTCW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LVIPYFSGAAYVYEHFVRP+F N +++NIWYVPK  D F KPDD+LTAAEKYIAENG + 
Sbjct: 86  LVIPYFSGAAYVYEHFVRPVFVNPRSINIWYVPKKMDIFRKPDDVLTAAEKYIAENGPDA 145

Query: 121 LQNIINRADKAQASNRY------MSYSEGHSH 147
            + I++RADK++  N++        Y EG+ +
Sbjct: 146 FEKILSRADKSKRYNKHEYESYETMYGEGYQY 177

[Close]

BLAST of MS001988.1 vs. TAIR 10
Match: AT1G69700.1 (HVA22 homologue C )

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-39
Identity = 79/150 (52.67%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASV+AIET+S  +D+QWLTYW+LY++++LFELTF+K LEW PIWPY KL   CW
Sbjct: 28  LVYPLYASVKAIETRSLPEDEQWLTYWVLYALISLFELTFSKPLEWFPIWPYMKLFGICW 87

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQ--TVNIWYVPKMK-DFFSK--PDDILTAAEKYIAE 120
           LV+P F+GA ++Y+HF+RP + + Q  T  IWYVP  K +FF K   DDILTAAEKY+ +
Sbjct: 88  LVLPQFNGAEHIYKHFIRPFYRDPQRATTKIWYVPHKKFNFFPKRDDDDILTAAEKYMEQ 147

Query: 121 NGTEDLQNIINRADKAQASNRYMSYSEGHS 146
           +GTE  + +I + D         SY  G S
Sbjct: 148 HGTEAFERMIVKKD---------SYERGRS 168

[Close]

BLAST of MS001988.1 vs. TAIR 10
Match: AT5G62490.1 (HVA22 homologue B )

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-33
Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           L++  YASVRAIE++S  DD+QWLTYW LYS++ LFELTF ++LEWIP++PYAKL L+ W
Sbjct: 26  LVYPLYASVRAIESRSHGDDKQWLTYWALYSLIKLFELTFFRLLEWIPLYPYAKLALTSW 85

Query: 61  LVIPYFSGAAYVYEHFVRPLFTNKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTED 120
           LV+P  +GAAY+YEH+VR    +  TVN+WYVP  KD     DD+   A K+   N +  
Sbjct: 86  LVLPGMNGAAYLYEHYVRSFLLSPHTVNVWYVPAKKD-----DDLGATAGKFTPVNDSGA 145

Query: 121 LQNIINRADKAQASNRYMSYS 142
            Q  I        S +Y+ +S
Sbjct: 146 PQEKI--VSSVDTSAKYVGHS 159

[Close]

BLAST of MS001988.1 vs. TAIR 10
Match: AT2G42820.1 (HVA22-like protein F )

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
          LL+  YAS RAIE+ + +DDQQWLTYWI+YS++T+FEL+  +VL W+P WPY KL+   W
Sbjct: 21 LLYPLYASFRAIESPTMLDDQQWLTYWIIYSLITIFELSVWRVLAWLPFWPYLKLLFCMW 80

Query: 61 LVIPYFSGAAYVYEHFVR 79
          LV+P FSGAAY+Y +FVR
Sbjct: 81 LVLPMFSGAAYIYSNFVR 98

[Close]

BLAST of MS001988.1 vs. TAIR 10
Match: AT5G50720.1 (HVA22 homologue E )

HSP 1 Score: 101.7 bits (252), Expect = 5.5e-22
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1   LLFGRYASVRAIETKSPVDDQQWLTYWILYSMLTLFELTFAKVLEWIPIWPYAKLILSCW 60
           LL+  YASV AIE+ S VDD+QWL YWILYS LTL EL    +LEWIPIW  AKL+   W
Sbjct: 21  LLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIWYTAKLVFVAW 80

Query: 61  LVIPYFSGAAYVYEHFVRPLF 82
           LV+P F GAA++Y   VR  F
Sbjct: 81  LVLPQFRGAAFIYNKVVREQF 101

The following BLAST results are available for this feature:

BLAST of MS001988.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135543.1	3.8e-81	96.13	HVA22-like protein a [Momordica charantia]	[more]
KAA0057935.1	3.7e-76	91.03	HVA22-like protein a [Cucumis melo var. makuwa] >TYJ98622.1 HVA22-like protein a...	[more]
XP_008453193.1	4.8e-76	91.61	PREDICTED: HVA22-like protein a [Cucumis melo] >XP_008453194.1 PREDICTED: HVA22-...	[more]
XP_022987204.1	1.8e-75	92.26	HVA22-like protein a [Cucurbita maxima]	[more]
XP_004138159.1	6.9e-75	88.13	HVA22-like protein a [Cucumis sativus] >KGN63661.1 hypothetical protein Csa_0142...	[more]

BLAST of MS001988.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7V4	7.0e-54	63.82	HVA22-like protein a OS=Arabidopsis thaliana OX=3702 GN=HVA22A PE=2 SV=1	[more]
Q9S784	5.4e-38	52.67	HVA22-like protein c OS=Arabidopsis thaliana OX=3702 GN=HVA22C PE=2 SV=1	[more]
Q9SYX7	3.4e-32	49.65	HVA22-like protein b OS=Arabidopsis thaliana OX=3702 GN=HVA22B PE=2 SV=2	[more]
Q682H0	3.4e-24	61.54	HVA22-like protein f OS=Arabidopsis thaliana OX=3702 GN=HVA22F PE=2 SV=1	[more]
Q9FED2	7.8e-21	60.49	HVA22-like protein e OS=Arabidopsis thaliana OX=3702 GN=HVA22E PE=2 SV=1	[more]

BLAST of MS001988.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C536	1.8e-81	96.13	HVA22-like protein OS=Momordica charantia OX=3673 GN=LOC111007471 PE=3 SV=1	[more]
A0A5A7UWG1	1.8e-76	91.03	HVA22-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G0...	[more]
A0A1S3BWS9	2.3e-76	91.61	HVA22-like protein OS=Cucumis melo OX=3656 GN=LOC103493983 PE=3 SV=1	[more]
A0A6J1JI83	8.8e-76	92.26	HVA22-like protein OS=Cucurbita maxima OX=3661 GN=LOC111484825 PE=3 SV=1	[more]
A0A0A0LUH0	3.3e-75	88.13	HVA22-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G009650 PE=3 SV=1	[more]

BLAST of MS001988.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74520.1	5.0e-55	63.82	HVA22 homologue A	[more]
AT1G69700.1	3.8e-39	52.67	HVA22 homologue C	[more]
AT5G62490.1	2.4e-33	49.65	HVA22 homologue B	[more]
AT2G42820.1	2.4e-25	61.54	HVA22-like protein F	[more]
AT5G50720.1	5.5e-22	60.49	HVA22 homologue E	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004345	TB2/DP1/HVA22-related protein	PFAM	PF03134	TB2_DP1_HVA22	coord: 6..80 e-value: 3.4E-25 score: 87.8
IPR004345	TB2/DP1/HVA22-related protein	PANTHER	PTHR12300	HVA22-LIKE PROTEINS	coord: 3..132
None	No IPR available	PANTHER	PTHR12300:SF114	HVA22-LIKE PROTEIN	coord: 3..132

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001988	MS001988	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001988.1-cds	MS001988.1-cds-scaffold30:1497340..1497423	CDS
MS001988.1-cds	MS001988.1-cds-scaffold30:1497580..1497823	CDS
MS001988.1-cds	MS001988.1-cds-scaffold30:1498530..1498666	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001988.1	MS001988.1-protein	polypeptide