MS001961.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001961.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Dynein light chain 1, cytoplasmic
Location	scaffold30: 1313180 .. 1313846 (-)
Sequence length	585
RNA-Seq Expression	MS001961.1
Synteny	MS001961.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTGGATCCCCCTCTCCCCAACTTGAACTTGTCAAAAGTTGATTCTCAGCCCCAAATGGTCGGCCCCAGAACCGTGCAGAAAGTCCGCGTACACCCCCATGAGAGATTCAATGATTCCGATGAAAATTTCGAACGCATGATCAACTGTATCACCGCCAAAGAAAGGCAAATGAAACAGCTCCTGCAGGAACACCAACATCTCACCCGCCGCCTCTCCATTTCCCTGTCTTCATCGCGCAGCGGCACAAGAAGATCCATCGGAGGCTCGCCGATTCTTCAGCTTGCGGACGTGTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCGCCAAAAGGGTCCACGACAGTATGGAGAAGTTCACTTCCAAATCCCTCGCCTTAACTCTCAAGAAGGTACAATACAAATCCCTAGTTTTTGTTTTTGAATTGGATGGAGGGTTGTTTTTACTTAGATTTGTTCAGCTGATTTGGGCAGGAATTCGATGGGGTTTACGGGCCGGCGTGGCACTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACGCATTCAGTGGGTGGATTTCTGTATTTTTCCATGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTTCAAAGGGCCAAT

mRNA sequence

AAACTGGATCCCCCTCTCCCCAACTTGAACTTGTCAAAAGTTGATTCTCAGCCCCAAATGGTCGGCCCCAGAACCGTGCAGAAAGTCCGCGTACACCCCCATGAGAGATTCAATGATTCCGATGAAAATTTCGAACGCATGATCAACTGTATCACCGCCAAAGAAAGGCAAATGAAACAGCTCCTGCAGGAACACCAACATCTCACCCGCCGCCTCTCCATTTCCCTGTCTTCATCGCGCAGCGGCACAAGAAGATCCATCGGAGGCTCGCCGATTCTTCAGCTTGCGGACGTGTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCGCCAAAAGGGTCCACGACAGTATGGAGAAGTTCACTTCCAAATCCCTCGCCTTAACTCTCAAGAAGGAATTCGATGGGGTTTACGGGCCGGCGTGGCACTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACGCATTCAGTGGGTGGATTTCTGTATTTTTCCATGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTTCAAAGGGCCAAT

Coding sequence (CDS)

AAACTGGATCCCCCTCTCCCCAACTTGAACTTGTCAAAAGTTGATTCTCAGCCCCAAATGGTCGGCCCCAGAACCGTGCAGAAAGTCCGCGTACACCCCCATGAGAGATTCAATGATTCCGATGAAAATTTCGAACGCATGATCAACTGTATCACCGCCAAAGAAAGGCAAATGAAACAGCTCCTGCAGGAACACCAACATCTCACCCGCCGCCTCTCCATTTCCCTGTCTTCATCGCGCAGCGGCACAAGAAGATCCATCGGAGGCTCGCCGATTCTTCAGCTTGCGGACGTGTTCGCCAACAATGGGGTCAGATTGGTTTCCGCCGATATGCCGCCGTTTATGCAGATCCACGCCGTCGATTGCGCCAAAAGGGTCCACGACAGTATGGAGAAGTTCACTTCCAAATCCCTCGCCTTAACTCTCAAGAAGGAATTCGATGGGGTTTACGGGCCGGCGTGGCACTGTATTGTGGGGAAGAGTTTTGGGTCATTTGTGACGCATTCAGTGGGTGGATTTCTGTATTTTTCCATGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTTCAAAGGGCCAAT

Protein sequence

KLDPPLPNLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKERQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMAQKLYILLFKTTVQRAN

Homology

[Close]

BLAST of MS001961.1 vs. NCBI nr
Match: XP_022135252.1 (uncharacterized protein LOC111007260 [Momordica charantia])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 194/200 (97.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   KLDPPLP-----NLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKE 60
           KLD PLP     NLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKE
Sbjct: 34  KLDHPLPNTALHNLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKE 93

Query: 61  RQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFM 120
           RQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFM
Sbjct: 94  RQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFM 153

Query: 121 QIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLY 180
           QIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLY
Sbjct: 154 QIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLY 213

Query: 181 FSMAQKLYILLFKTTVQRAN 196
           FSMAQKLYILLFKTTVQRAN
Sbjct: 214 FSMAQKLYILLFKTTVQRAN 233

[Close]

BLAST of MS001961.1 vs. NCBI nr
Match: XP_038879954.1 (uncharacterized protein LOC120071657 [Benincasa hispida])

HSP 1 Score: 306.2 bits (783), Expect = 2.0e-79
Identity = 158/204 (77.45%), Postives = 176/204 (86.27%), Query Frame = 0


Query: 1   KLDPPLPNLNLSKVDSQPQMVGPRTVQKVRVHPH---------ERFNDSDENFERMINCI 60
           K +PP P ++   + S P+MVGP TVQKV   P+         E+FNDS+E +ERMINCI
Sbjct: 56  KSNPPSPKVDSISLHSHPKMVGPITVQKVAKKPNETPQEHSTTEKFNDSEERYERMINCI 115

Query: 61  TAKERQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADM 120
           TAKER+MKQLL+EH+HLTRRLS+SLSSSRSG R+SI  S I QLADVFANNGV++VSADM
Sbjct: 116 TAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRKSICVSQI-QLADVFANNGVKVVSADM 175

Query: 121 PPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVG 180
           PPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVG
Sbjct: 176 PPFMQIHAVDCARKTHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVG 235

Query: 181 GFLYFSMAQKLYILLFKTTVQRAN 196
           GFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 236 GFLYFSMAQKLYILLFKTTVQRAN 258

[Close]

BLAST of MS001961.1 vs. NCBI nr
Match: XP_022921489.1 (uncharacterized protein LOC111429742 [Cucurbita moschata])

HSP 1 Score: 301.2 bits (770), Expect = 6.4e-78
Identity = 161/209 (77.03%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   KLDPPLPNLNLSKVDS----QPQMVGPRTVQKVRVHPH---------ERFNDSDENFERM 60
           KLDP  P  +  K+       P+MVGPRTVQ V   P+         E+FNDS+E FERM
Sbjct: 40  KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERM 99

Query: 61  INCITAKERQMKQLLQEHQHLTRRLSISLSSSRSG-TRRSIGGSPILQLADVFANNGVRL 120
           INCITAKER+MKQLL+EH+HLTRRLS+SLSSSRSG  RRSI GS I +LADVFANNGV++
Sbjct: 100 INCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQI-ELADVFANNGVKV 159

Query: 121 VSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 180
           VSADMPPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV
Sbjct: 160 VSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 219

Query: 181 THSVGGFLYFSMAQKLYILLFKTTVQRAN 196
           THSVGGFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 220 THSVGGFLYFSMAQKLYILLFKTTVQRAN 247

[Close]

BLAST of MS001961.1 vs. NCBI nr
Match: XP_023516401.1 (uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.2 bits (770), Expect = 6.4e-78
Identity = 161/209 (77.03%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   KLDPPLPNLNLSKVDS----QPQMVGPRTVQKVRVHPH---------ERFNDSDENFERM 60
           KLDP  P  +  K+       P+MVGPRTVQ V   P+         E+FNDS+E FERM
Sbjct: 38  KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPQEHSTTEKFNDSEEKFERM 97

Query: 61  INCITAKERQMKQLLQEHQHLTRRLSISLSSSRSG-TRRSIGGSPILQLADVFANNGVRL 120
           INCITAKER+MKQLL+EH+HLTRRLS+SLSSSRSG  RRSI GS I +LADVFANNGV++
Sbjct: 98  INCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQI-ELADVFANNGVKV 157

Query: 121 VSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 180
           VSADMPPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV
Sbjct: 158 VSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 217

Query: 181 THSVGGFLYFSMAQKLYILLFKTTVQRAN 196
           THSVGGFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 218 THSVGGFLYFSMAQKLYILLFKTTVQRAN 245

[Close]

BLAST of MS001961.1 vs. NCBI nr
Match: KAG7023168.1 (Dynein light chain, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 6.4e-78
Identity = 161/209 (77.03%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   KLDPPLPNLNLSKVDS----QPQMVGPRTVQKVRVHPH---------ERFNDSDENFERM 60
           KLDP  P  +  K+       P+MVGPRTVQ V   P+         E+FNDS+E FERM
Sbjct: 36  KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERM 95

Query: 61  INCITAKERQMKQLLQEHQHLTRRLSISLSSSRSG-TRRSIGGSPILQLADVFANNGVRL 120
           INCITAKER+MKQLL+EH+HLTRRLS+SLSSSRSG  RRSI GS I +LADVFANNGV++
Sbjct: 96  INCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQI-ELADVFANNGVKV 155

Query: 121 VSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 180
           VSADMPPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV
Sbjct: 156 VSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 215

Query: 181 THSVGGFLYFSMAQKLYILLFKTTVQRAN 196
           THSVGGFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 216 THSVGGFLYFSMAQKLYILLFKTTVQRAN 243

[Close]

BLAST of MS001961.1 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 104 VRLVSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 163
           + + +ADMP FMQ  A +C  +  +  E    + +A+ +KKEFD  Y P WHCIVGKSFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 164 SFVTHSVGGFLYFSMAQKLYILLFK 189
           SFVTH    F+YF++  K  +LLFK
Sbjct: 68  SFVTHETKNFIYFNI-NKHSVLLFK 89

[Close]

BLAST of MS001961.1 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 108 SADMPPFMQIHAVDCAKRVHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 167
           +ADMP  MQ  AVDCA +   ++EKF   K +A  +KKEFD  Y P WHCIVG++FGS+V
Sbjct: 10  NADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 69

Query: 168 THSVGGFLYFSMAQKLYILLFKT 190
           TH    F+YF + Q + +LLFK+
Sbjct: 70  THETKHFIYFYLGQ-VAVLLFKS 88

[Close]

BLAST of MS001961.1 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 108 SADMPPFMQIHAVDCAKRVHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 167
           +ADM   MQ  AVDCA +   +MEK+   K +A  +KKEFD  Y P WHCIVG++FGS+V
Sbjct: 10  NADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 69

Query: 168 THSVGGFLYFSMAQKLYILLFKT 190
           TH    F+YF + Q + ILLFK+
Sbjct: 70  THETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of MS001961.1 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 108 SADMPPFMQIHAVDCAKRVHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 167
           +ADM   MQ  AVDCA +   +MEK+   K +A  +KKEFD  Y P WHCIVG++FGS+V
Sbjct: 10  NADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 69

Query: 168 THSVGGFLYFSMAQKLYILLFKT 190
           TH    F+YF + Q + ILLFK+
Sbjct: 70  THETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of MS001961.1 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 108 SADMPPFMQIHAVDCAKRVHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 167
           +ADM   MQ  AVDCA +   +MEK+   K +A  +KKEFD  Y P WHCIVG++FGS+V
Sbjct: 10  NADMSEDMQQDAVDCATQ---AMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 69

Query: 168 THSVGGFLYFSMAQKLYILLFKT 190
           TH    F+YF + Q + ILLFK+
Sbjct: 70  THETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of MS001961.1 vs. ExPASy TrEMBL
Match: A0A6J1C262 (uncharacterized protein LOC111007260 OS=Momordica charantia OX=3673 GN=LOC111007260 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.3e-102
Identity = 194/200 (97.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   KLDPPLP-----NLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKE 60
           KLD PLP     NLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKE
Sbjct: 34  KLDHPLPNTALHNLNLSKVDSQPQMVGPRTVQKVRVHPHERFNDSDENFERMINCITAKE 93

Query: 61  RQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFM 120
           RQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFM
Sbjct: 94  RQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADMPPFM 153

Query: 121 QIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLY 180
           QIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLY
Sbjct: 154 QIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVGGFLY 213

Query: 181 FSMAQKLYILLFKTTVQRAN 196
           FSMAQKLYILLFKTTVQRAN
Sbjct: 214 FSMAQKLYILLFKTTVQRAN 233

[Close]

BLAST of MS001961.1 vs. ExPASy TrEMBL
Match: A0A6J1E0M2 (uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC111429742 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.1e-78
Identity = 161/209 (77.03%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   KLDPPLPNLNLSKVDS----QPQMVGPRTVQKVRVHPH---------ERFNDSDENFERM 60
           KLDP  P  +  K+       P+MVGPRTVQ V   P+         E+FNDS+E FERM
Sbjct: 40  KLDPITPLSDSDKLSKSHPPSPKMVGPRTVQMVAKKPNEAPLERSTTEKFNDSEEKFERM 99

Query: 61  INCITAKERQMKQLLQEHQHLTRRLSISLSSSRSG-TRRSIGGSPILQLADVFANNGVRL 120
           INCITAKER+MKQLL+EH+HLTRRLS+SLSSSRSG  RRSI GS I +LADVFANNGV++
Sbjct: 100 INCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRRSICGSQI-ELADVFANNGVKV 159

Query: 121 VSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 180
           VSADMPPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV
Sbjct: 160 VSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 219

Query: 181 THSVGGFLYFSMAQKLYILLFKTTVQRAN 196
           THSVGGFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 220 THSVGGFLYFSMAQKLYILLFKTTVQRAN 247

[Close]

BLAST of MS001961.1 vs. ExPASy TrEMBL
Match: A0A0A0LPA2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008410 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.7e-77
Identity = 159/207 (76.81%), Postives = 172/207 (83.09%), Query Frame = 0


Query: 1   KLDPPLP---NLNLSKVDSQPQMVGPRTVQKVRVHPH---------ERFNDSDENFERMI 60
           KLD P P   + NLSK    P  VGPRT QKV  +P+         E+FN S+E FE MI
Sbjct: 42  KLDSPTPLSDSDNLSK-SRPPSPVGPRTEQKVAKNPNETPQEHSTTEKFNGSEERFEHMI 101

Query: 61  NCITAKERQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVS 120
           NCITAKER+MKQLL+EH+HLTRRLS+SLSSSRSG RRS  GS I QL DVFA NGV++VS
Sbjct: 102 NCITAKEREMKQLLKEHEHLTRRLSVSLSSSRSGRRRSFYGSQI-QLGDVFAKNGVKVVS 161

Query: 121 ADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH 180
           ADMPPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH
Sbjct: 162 ADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH 221

Query: 181 SVGGFLYFSMAQKLYILLFKTTVQRAN 196
           SVGGFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 222 SVGGFLYFSMAQKLYILLFKTTVQRAN 246

[Close]

BLAST of MS001961.1 vs. ExPASy TrEMBL
Match: A0A6J1IBG1 (uncharacterized protein LOC111471403 OS=Cucurbita maxima OX=3661 GN=LOC111471403 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.5e-76
Identity = 151/204 (74.02%), Postives = 170/204 (83.33%), Query Frame = 0


Query: 1   KLDPPLPNLNLSKVDSQPQMVGPRTVQKVRVHPH---------ERFNDSDENFERMINCI 60
           K  PP P +    + S P+MVGPRTV K    P+         E+FNDS+E FERMINCI
Sbjct: 72  KSHPPSPKVVPVSLHSNPKMVGPRTVHKQAKKPNETPRQHSTTEKFNDSEEKFERMINCI 131

Query: 61  TAKERQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVSADM 120
           T KER+MKQLL +HQHLTRRLS+SLSSSRSG R+SI GS I QLA++FANNGV++VSADM
Sbjct: 132 TTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQI-QLAELFANNGVKVVSADM 191

Query: 121 PPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTHSVG 180
           PPFMQIHAVDCA++ HDSMEKFTSKSLAL+LK+EFDG YGPAWHCIVGKSFGSFVTHSVG
Sbjct: 192 PPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFGSFVTHSVG 251

Query: 181 GFLYFSMAQKLYILLFKTTVQRAN 196
           GFLYFS+AQKLYILLFKTTV RAN
Sbjct: 252 GFLYFSLAQKLYILLFKTTVLRAN 274

[Close]

BLAST of MS001961.1 vs. ExPASy TrEMBL
Match: A0A5A7UPX5 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002210 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 158/207 (76.33%), Postives = 170/207 (82.13%), Query Frame = 0


Query: 1   KLDPPLP---NLNLSKVDSQPQMVGPRTVQKVRVHPH---------ERFNDSDENFERMI 60
           KLDPP P   + NLSK    P  VGPRT QKV    +         E+FN S+E FE MI
Sbjct: 42  KLDPPTPLSDSDNLSK-SHPPSPVGPRTEQKVAKKLNETPQEHTTTEKFNGSEERFEHMI 101

Query: 61  NCITAKERQMKQLLQEHQHLTRRLSISLSSSRSGTRRSIGGSPILQLADVFANNGVRLVS 120
           NCITAKER+MKQLL+EH+H+TRRLSISLSSSRSG RRS  GS I QL DVFA NG ++VS
Sbjct: 102 NCITAKEREMKQLLKEHEHVTRRLSISLSSSRSGRRRSFYGSQI-QLGDVFAKNGAKVVS 161

Query: 121 ADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH 180
           ADMPPFMQIHAVDCA++ HDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH
Sbjct: 162 ADMPPFMQIHAVDCARKAHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH 221

Query: 181 SVGGFLYFSMAQKLYILLFKTTVQRAN 196
           SVGGFLYFSMAQKLYILLFKTTVQRAN
Sbjct: 222 SVGGFLYFSMAQKLYILLFKTTVQRAN 246

[Close]

BLAST of MS001961.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.9e-30
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 104 VRLVSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFG 163
           VR+++ADMP FMQ HA  CA+   DS+EKF+SK +A  LKKEFD  YGPAWHCIVG SFG
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query: 164 SFVTHSVGGFLYFSMAQKLYILLFKTTVQRAN 196
           SFVTHS G F+YFSM  KLY+LLFKT V+ A+
Sbjct: 177 SFVTHSTGCFIYFSM-DKLYVLLFKTKVRPAS 207

[Close]

BLAST of MS001961.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 104 VRLVSADMPPFMQIHAVDCAKRVHDSME-KFTSKSLALTLKKEFDGVYGPAWHCIVGKSF 163
           VR+ ++DMP   Q  A   ++ + ++   K  +K LA  LKK+FD  YGPAWHCIVG SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 164 GSFVTHSVGGFLYFSMAQKLYILLFKTTVQ 193
           GS+VTHS GGFLYF +  K+Y+LLFKT V+
Sbjct: 96  GSYVTHSTGGFLYFQI-DKVYVLLFKTAVE 124

[Close]

BLAST of MS001961.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 109 ADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGSFVTH 168
           +DMP  MQ+ A+  A +  D  + F  KS+A  +KKEFD  YG  W C+VG +FG F TH
Sbjct: 11  SDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGCFFTH 70

Query: 169 SVGGFLYFSMAQKLYILLFK 189
           S G F+YF + + L  L+FK
Sbjct: 71  SKGTFIYFQL-ETLKFLIFK 89

[Close]

BLAST of MS001961.1 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-13
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 108 SADMPPFMQIHAVDCAKRVHDSMEKFT-SKSLALTLKKEFDGVYGPAWHCIVGKSFGSFV 167
           SADM   MQ  A++ A     + EK++  K +A  +KKEFD  +G  WHCIVG++FGS+V
Sbjct: 44  SADMKDDMQKEAIEIA---ISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYV 103

Query: 168 THSVGGFLYFSMAQKLYILLFKT 190
           TH    F+YF + QK  +LLFK+
Sbjct: 104 THETNHFVYFYLDQKA-VLLFKS 122

[Close]

BLAST of MS001961.1 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 105 RLVSADMPPFMQIHAVDCAKRVHDSMEKFTSKSLALTLKKEFDGVYGPAWHCIVGKSFGS 164
           ++   DMP  MQ+ A+  A +  D  + F S S+A  +KKEFD  YG  W C+VG +FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 165 FVTHSVGGFLYFSMAQKLYILLFK 189
           F THS G F+YF +   L  L+FK
Sbjct: 67  FFTHSKGTFIYFHLG-TLNFLIFK 89

The following BLAST results are available for this feature:

BLAST of MS001961.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135252.1	1.1e-101	97.00	uncharacterized protein LOC111007260 [Momordica charantia]	[more]
XP_038879954.1	2.0e-79	77.45	uncharacterized protein LOC120071657 [Benincasa hispida]	[more]
XP_022921489.1	6.4e-78	77.03	uncharacterized protein LOC111429742 [Cucurbita moschata]	[more]
XP_023516401.1	6.4e-78	77.03	uncharacterized protein LOC111780277 [Cucurbita pepo subsp. pepo]	[more]
KAG7023168.1	6.4e-78	77.03	Dynein light chain, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS001961.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86A88	2.1e-15	48.24	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
O02414	3.6e-15	51.81	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q3MHR3	2.3e-14	51.81	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	2.3e-14	51.81	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	2.3e-14	51.81	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of MS001961.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C262	5.3e-102	97.00	uncharacterized protein LOC111007260 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E0M2	3.1e-78	77.03	uncharacterized protein LOC111429742 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A0A0LPA2	7.7e-77	76.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008410 PE=4 SV=1	[more]
A0A6J1IBG1	8.5e-76	74.02	uncharacterized protein LOC111471403 OS=Cucurbita maxima OX=3661 GN=LOC111471403...	[more]
A0A5A7UPX5	1.1e-75	76.33	Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of MS001961.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	6.9e-30	67.39	Dynein light chain type 1 family protein	[more]
AT1G23220.1	1.1e-19	53.33	Dynein light chain type 1 family protein	[more]
AT1G52240.2	2.0e-13	46.25	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	4.5e-13	46.99	Dynein light chain type 1 family protein	[more]
AT3G16120.1	5.9e-13	44.05	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 45..195
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 99..189 e-value: 4.6E-37 score: 139.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 105..189 e-value: 1.9E-27 score: 95.5
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 45..195
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 98..190 e-value: 1.6E-29 score: 103.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 103..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001961	MS001961	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001961.1-cds	MS001961.1-cds-scaffold30:1313180..1313332	CDS
MS001961.1-cds	MS001961.1-cds-scaffold30:1313415..1313846	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001961.1	MS001961.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex