MS001947.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001947.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Alpha-N-acetylglucosaminidase family / NAGLU family isoform 1
Location	scaffold30: 1211487 .. 1211738 (+)
Sequence length	252
RNA-Seq Expression	MS001947.1
Synteny	MS001947.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCCATGGCAGGAAACGGCTCCTACGATTGGGCGGACCAGTGGGATTACAGCGACTCCAAGGAGATAGTCACGGACAAAAACAAGAAGGGCGGCGGCGGCGGCGGCGGTGCCAAGTACAAGCAGAAGGTCGGAGAAGGGCTTGGGAAGACCAAAGCTGTGGCCTCCAATGGCGTCAAAAAGGTCAAGGAAGGAACCTCTCTTGGCCTCCAATGGATCAAAGATAAATACAATAAAACCACTCATAAGAAT

mRNA sequence

CAATCCATGGCAGGAAACGGCTCCTACGATTGGGCGGACCAGTGGGATTACAGCGACTCCAAGGAGATAGTCACGGACAAAAACAAGAAGGGCGGCGGCGGCGGCGGCGGTGCCAAGTACAAGCAGAAGGTCGGAGAAGGGCTTGGGAAGACCAAAGCTGTGGCCTCCAATGGCGTCAAAAAGGTCAAGGAAGGAACCTCTCTTGGCCTCCAATGGATCAAAGATAAATACAATAAAACCACTCATAAGAAT

Coding sequence (CDS)

CAATCCATGGCAGGAAACGGCTCCTACGATTGGGCGGACCAGTGGGATTACAGCGACTCCAAGGAGATAGTCACGGACAAAAACAAGAAGGGCGGCGGCGGCGGCGGCGGTGCCAAGTACAAGCAGAAGGTCGGAGAAGGGCTTGGGAAGACCAAAGCTGTGGCCTCCAATGGCGTCAAAAAGGTCAAGGAAGGAACCTCTCTTGGCCTCCAATGGATCAAAGATAAATACAATAAAACCACTCATAAGAAT

Protein sequence

QSMAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVKKVKEGTSLGLQWIKDKYNKTTHKN

Homology

[Close]

BLAST of MS001947.1 vs. NCBI nr
Match: XP_022135502.1 (uncharacterized protein LOC111007442 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 7.6e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 3  MAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVKKV 62
          MAGNGSYDWADQWDYSDSKEIVTDKNKK GGGGGGAKYKQKVGEGLGKTKAVASNGVKKV
Sbjct: 1  MAGNGSYDWADQWDYSDSKEIVTDKNKK-GGGGGGAKYKQKVGEGLGKTKAVASNGVKKV 60

Query: 63 KEGTSLGLQWIKDKYNKTTHKN 85
          KEGTSLGLQWIKDKYNKTTHKN
Sbjct: 61 KEGTSLGLQWIKDKYNKTTHKN 81

[Close]

BLAST of MS001947.1 vs. NCBI nr
Match: KAG6589470.1 (Alpha-N-acetylglucosaminidase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   QSMAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVK 60
           +SMAGNGSYDWADQWDYSDSK++VT+  KK GGG    KYKQKVGEGLGKTKAVASNGVK
Sbjct: 80  KSMAGNGSYDWADQWDYSDSKDVVTENTKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVK 139

Query: 61  KVKEGTSLGLQWIKDKYNKTTHK 84
           KVKEGTSLG QWIKDKYNKT HK
Sbjct: 140 KVKEGTSLGFQWIKDKYNKTAHK 162

[Close]

BLAST of MS001947.1 vs. NCBI nr
Match: XP_023516550.1 (uncharacterized protein LOC111780400 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 4.8e-30
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   QSMAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVK 60
           +SMAG+GSYDWADQWDYSDSK++VT+  KK GGG    KYKQKVGEGLGKTKAVASNGVK
Sbjct: 37  KSMAGSGSYDWADQWDYSDSKDVVTENKKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVK 96

Query: 61  KVKEGTSLGLQWIKDKYNKTTHK 84
           KVKEGTSLG QWIKDKYNKT HK
Sbjct: 97  KVKEGTSLGFQWIKDKYNKTAHK 119

[Close]

BLAST of MS001947.1 vs. NCBI nr
Match: XP_022988421.1 (uncharacterized protein LOC111485668 [Cucurbita maxima] >XP_022988422.1 uncharacterized protein LOC111485668 [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 4.8e-30
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1   QSMAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGG-GAKYKQKVGEGLGKTKAVASNGV 60
           +SMAGNGSYDWADQWDYSDSK++VT+  KK GGGG    KYKQKVGEGLGKTKAVASNGV
Sbjct: 37  KSMAGNGSYDWADQWDYSDSKDVVTETKKKSGGGGNTTTKYKQKVGEGLGKTKAVASNGV 96

Query: 61  KKVKEGTSLGLQWIKDKYNKTTHK 84
           KKVKEGTSLG QWIKDKYNKT HK
Sbjct: 97  KKVKEGTSLGFQWIKDKYNKTAHK 120

[Close]

BLAST of MS001947.1 vs. NCBI nr
Match: XP_022921775.1 (uncharacterized protein LOC111429929 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 8.2e-30
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 3  MAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVKKV 62
          MAGNGSYDWADQWDYSDSK++VT+  KK GGG    KYKQKVGEGLGKTKAVASNGVKKV
Sbjct: 1  MAGNGSYDWADQWDYSDSKDVVTENTKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVKKV 60

Query: 63 KEGTSLGLQWIKDKYNKTTHK 84
          K+GTSLG QWIKDKYNKT HK
Sbjct: 61 KQGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of MS001947.1 vs. ExPASy TrEMBL
Match: A0A6J1C2W0 (uncharacterized protein LOC111007442 OS=Momordica charantia OX=3673 GN=LOC111007442 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 3  MAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVKKV 62
          MAGNGSYDWADQWDYSDSKEIVTDKNKK GGGGGGAKYKQKVGEGLGKTKAVASNGVKKV
Sbjct: 1  MAGNGSYDWADQWDYSDSKEIVTDKNKK-GGGGGGAKYKQKVGEGLGKTKAVASNGVKKV 60

Query: 63 KEGTSLGLQWIKDKYNKTTHKN 85
          KEGTSLGLQWIKDKYNKTTHKN
Sbjct: 61 KEGTSLGLQWIKDKYNKTTHKN 81

[Close]

BLAST of MS001947.1 vs. ExPASy TrEMBL
Match: A0A6J1JCZ5 (uncharacterized protein LOC111485668 OS=Cucurbita maxima OX=3661 GN=LOC111485668 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1   QSMAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGG-GAKYKQKVGEGLGKTKAVASNGV 60
           +SMAGNGSYDWADQWDYSDSK++VT+  KK GGGG    KYKQKVGEGLGKTKAVASNGV
Sbjct: 37  KSMAGNGSYDWADQWDYSDSKDVVTETKKKSGGGGNTTTKYKQKVGEGLGKTKAVASNGV 96

Query: 61  KKVKEGTSLGLQWIKDKYNKTTHK 84
           KKVKEGTSLG QWIKDKYNKT HK
Sbjct: 97  KKVKEGTSLGFQWIKDKYNKTAHK 120

[Close]

BLAST of MS001947.1 vs. ExPASy TrEMBL
Match: A0A6J1E6S2 (uncharacterized protein LOC111429929 OS=Cucurbita moschata OX=3662 GN=LOC111429929 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.0e-30
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 3  MAGNGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVKKV 62
          MAGNGSYDWADQWDYSDSK++VT+  KK GGG    KYKQKVGEGLGKTKAVASNGVKKV
Sbjct: 1  MAGNGSYDWADQWDYSDSKDVVTENTKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVKKV 60

Query: 63 KEGTSLGLQWIKDKYNKTTHK 84
          K+GTSLG QWIKDKYNKT HK
Sbjct: 61 KQGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of MS001947.1 vs. ExPASy TrEMBL
Match: A0A0A0LUC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005770 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.0e-27
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 6  NGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGAKYKQKVGEGLGKTKAVASNGVKKVKEG 65
          N SYDWADQWDYSDS ++V+D  KK GGG   AKYKQKVGEGLGKTK+VASNGVKKVKEG
Sbjct: 6  NTSYDWADQWDYSDSTDVVSDNKKKTGGGNSSAKYKQKVGEGLGKTKSVASNGVKKVKEG 65

Query: 66 TSLGLQWIKDKYNKTTHK 84
          TSLG QWIK+KYNKT HK
Sbjct: 66 TSLGFQWIKEKYNKTAHK 83

[Close]

BLAST of MS001947.1 vs. ExPASy TrEMBL
Match: A0A5A7UUQ6 (Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002040 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 6  NGSYDWADQWDYSDSKEIVTDKNKK--GGGGGGGAKYKQKVGEGLGKTKAVASNGVKKVK 65
          N SYDWADQWDY+DS ++VT+  KK  G GG   AKYKQKVGEGLGKTKAVASNGVKKVK
Sbjct: 6  NSSYDWADQWDYNDSADVVTNNKKKISGSGGNSSAKYKQKVGEGLGKTKAVASNGVKKVK 65

Query: 66 EGTSLGLQWIKDKYNKTTHK 84
          EGTSLG QWIKDKYNKT HK
Sbjct: 66 EGTSLGFQWIKDKYNKTAHK 85

[Close]

BLAST of MS001947.1 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 11 WADQWDYSDSKEIVTDKNKKGG-GGGGGAKYKQKVGEGLGKTKAVASNGVKKVKEGTSLG 70
          WA+QW   DS +  + K   GG GGG  +KYK+KVG GLGKTKA AS+G+KKVK GTSLG
Sbjct: 6  WAEQW---DSNQQSSGKTTHGGEGGGASSKYKEKVGAGLGKTKAAASSGLKKVKIGTSLG 65

Query: 71 LQWIKDKYNKTTHKN 85
          L W+KDKYNKTT KN
Sbjct: 66 LNWVKDKYNKTTTKN 77

[Close]

BLAST of MS001947.1 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 6.7e-14
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 6  NGSYDWADQWDYSDSKEIVTDKNKKGGGGGGGA--------------KYKQKVGEGLGKT 65
          NG+  WADQWD S         + KGG  G GA              KYK+K+G+GL KT
Sbjct: 2  NGT-SWADQWDNSGD-------SAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKT 61

Query: 66 KAVASNGVKKVKEGTSLGLQWIKDKYNKTTHK 84
          KAVAS+G KK+K G+++G +W+KDKY+KTTHK
Sbjct: 62 KAVASSGFKKLKTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:

BLAST of MS001947.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135502.1	7.6e-36	98.78	uncharacterized protein LOC111007442 [Momordica charantia]	[more]
KAG6589470.1	1.3e-30	84.34	Alpha-N-acetylglucosaminidase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023516550.1	4.8e-30	83.13	uncharacterized protein LOC111780400 [Cucurbita pepo subsp. pepo]	[more]
XP_022988421.1	4.8e-30	84.52	uncharacterized protein LOC111485668 [Cucurbita maxima] >XP_022988422.1 uncharac...	[more]
XP_022921775.1	8.2e-30	83.95	uncharacterized protein LOC111429929 [Cucurbita moschata]	[more]

BLAST of MS001947.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001947.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2W0	3.7e-36	98.78	uncharacterized protein LOC111007442 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1JCZ5	2.3e-30	84.52	uncharacterized protein LOC111485668 OS=Cucurbita maxima OX=3661 GN=LOC111485668...	[more]
A0A6J1E6S2	4.0e-30	83.95	uncharacterized protein LOC111429929 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A0A0LUC7	7.0e-27	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005770 PE=4 SV=1	[more]
A0A5A7UUQ6	3.5e-26	80.00	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=C...	[more]

BLAST of MS001947.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	1.2e-18	65.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	6.7e-14	48.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..43
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 8..83
None	No IPR available	PANTHER	PTHR33386:SF5	OS02G0740600 PROTEIN	coord: 8..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001947	MS001947	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001947.1-cds	MS001947.1-cds-scaffold30:1211487..1211738	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001947.1	MS001947.1-protein	polypeptide