MS001629.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001629.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	54S ribosomal protein L51, mitochondrial
Location	scaffold377: 69488 .. 71492 (-)
Sequence length	357
RNA-Seq Expression	MS001629.1
Synteny	MS001629.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGCGAGGCGTATGGCAGCTTCAGAAGCTGATCGTCAGCTATTGTGACTGGGGAGGAAGTAGTAGGGGTATCAGGTTTGTTGAATTTTCACCTGAAAATTCTTTGTATTTCCAGCATGATTATTTCGCACTCATCTTGCTTTGTTTCAGCTTACTATGTTAAAGCTTGAATCGGGTAAAAAGTAATGGAAATTGCTTGGGTTTTTGGAAATGGGTTGTCCAAAACGGGTGGTTCCAGGATTAGGGTTCTTACATTGGAAGCTTATTTGGTTTCCTCTATTTTTTATCCAACTCAAACGTAGAACATGAGCTTAGTGACTCTCCGTAAAAGAATTATTAACATTTGGTAATGGCGTTTTAAAAGATTTAACCAAATTATAAGGCTACAATAAAACTTCTAAAATCACGGGCAAACTGAAATCAAGCTCAACACACCATATGGACTAAAATGACAATTTAACTTTATGCTTATATCTCTAATGTCACGTGTTCTGGTTTTTAAACCCAAGCTTCGAGTTTGTGTAATGTAATTTATTTTGCACGACTTGATACAATTCTGATTTTTGAATAGCTGGCAGCATAGCTTTGTCATACATTATACAAGTTGTTTTTGCTGATAAAAATTGGAAATTATATTCTCACATATCACTTCAGTATTACAGTGCTCTATGGGAAGTACTTTGTCAACTGTCACAACTTCACGATTCGTCGTGTAGCCTTACTTTTGTACTTTAAGCAAGGAGTTAAATGTTAATGTTGGTAGTAACATTAAGGTCTCAGATTTTATAATAATGTAATTCTTAGCGATTCTTTATAAATGAGTTTTAGACTTTAACAAATGTATAAAGAGGGAGAATATACAAGTTTGAACAAGAAAAGTGATCATAATAAATTCCTTGTAAAAGTAATGCTCACTGTTAGCTGCCCCTAATATGTTTGGAATTTTCTTATACAAAATCTACAAATTTGGAATTATGATTAAAGGTATTCTGAATCATGCATCAGATGTCATTGGCTGCCCCTAATATGTTAGGAATTTTCTTATACAAAATCTAAAAATTTGGAGTTACAAGTAAAGATATTCTGCATCATGCATGTTCTATATGTCAAATATAAGTGCACTTTCTTAGTTATCCATCTTTGGATGTCATGGTGGAGATTTGTCTCTTAACTTGGATCTGTTATCCTCTTAAACCGTGACATTGAAGCTAAATAGTATCAGGTAGATGGTCATTTTATACCTATAATTTAAACAAGGATTCACTGATGCCAATTCTATTCTTCTAAGCGTGCTGTTAGGAATATCATAAGAAAAGCGGACCCATACAAATCACGGCTTTTATCTTGAATATATTATTGATCAACCCGGTGAACTAACAATTTCATCATCACTACAGAAACAAATTTCTTTAGCCCTTTTTCTGTGAAACAAAGCCAAGCCTTTTCGGCCCACCTTCCATCCTGCTTTTGCTGGTTTTAGCCATGGTCTACCCAATAGTGCCTAATACCCTCTTAGCAAATTTGCTACCATGGATGAATAAAATAGTATTACATCCAGCTATCGTTTACAGCGATATAAGATACTGATTCATATGGGAGAGATATATTCTGACCAATTTGTATATCTGGCAGGGCATTTATGGACTCACAATTGCCAGCTTTTAAGGAGAAAAATCCTCAGCTAGAAGTAGTTACTGAACTCATTCGTGGCCAGCATCCACACTTGAAGGCCTTCTACAGTAATGCTCCCTCCCTCTCTCAACCTTCTCTAGGGTTATAGTTTACAAAGTGTTTTAGCAGGGGTTTTCTCATGTTTCAACACCTTCACAGAAAACAACAATGAACGTGTTGTTTGTGTAAAGAATTTGGATCCAGAAGAAATCAATTTGCACGCCGTAAGACTAAGGAATGCACTGGGACGAAAGGTCGTAAAACTGAGGACCAGACATGTAACAAAAAATCCTAGCGTGCAAGGTACGTGGAACACGGATGTTAGATTT

mRNA sequence

ATGGCTTTGCGAGGCGTATGGCAGCTTCAGAAGCTGATCGTCAGCTATTGTGACTGGGGAGGAAGTAGTAGGGGTATCAGGGCATTTATGGACTCACAATTGCCAGCTTTTAAGGAGAAAAATCCTCAGCTAGAAGTAGTTACTGAACTCATTCGTGGCCAGCATCCACACTTGAAGGCCTTCTACAAAAACAACAATGAACGTGTTGTTTGTGTAAAGAATTTGGATCCAGAAGAAATCAATTTGCACGCCGTAAGACTAAGGAATGCACTGGGACGAAAGGTCGTAAAACTGAGGACCAGACATGTAACAAAAAATCCTAGCGTGCAAGGTACGTGGAACACGGATGTTAGATTT

Coding sequence (CDS)

ATGGCTTTGCGAGGCGTATGGCAGCTTCAGAAGCTGATCGTCAGCTATTGTGACTGGGGAGGAAGTAGTAGGGGTATCAGGGCATTTATGGACTCACAATTGCCAGCTTTTAAGGAGAAAAATCCTCAGCTAGAAGTAGTTACTGAACTCATTCGTGGCCAGCATCCACACTTGAAGGCCTTCTACAAAAACAACAATGAACGTGTTGTTTGTGTAAAGAATTTGGATCCAGAAGAAATCAATTTGCACGCCGTAAGACTAAGGAATGCACTGGGACGAAAGGTCGTAAAACTGAGGACCAGACATGTAACAAAAAATCCTAGCGTGCAAGGTACGTGGAACACGGATGTTAGATTT

Protein sequence

MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKAFYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF

Homology

[Close]

BLAST of MS001629.1 vs. NCBI nr
Match: XP_022158383.1 (54S ribosomal protein L51, mitochondrial [Momordica charantia])

HSP 1 Score: 250.0 bits (637), Expect = 1.0e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKV+KLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of MS001629.1 vs. NCBI nr
Match: XP_038877046.1 (54S ribosomal protein L51, mitochondrial [Benincasa hispida])

HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYK+NN RVVCVKN+DPEEI+L A+RLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKSNNNRVVCVKNMDPEEIHLCAMRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of MS001629.1 vs. NCBI nr
Match: KAG7029113.1 (mrpl51 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 108/119 (90.76%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQLEVV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKV+KL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of MS001629.1 vs. NCBI nr
Match: XP_022979453.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 5.0e-57
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFMDS+LPAF+EKNPQL++VTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYK+NN RV+CVKN+DPE+I+LHA RLRNALGRKV+KLRTRHVTKNPS QGTWNTDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of MS001629.1 vs. NCBI nr
Match: XP_022932626.1 (54S ribosomal protein L51, mitochondrial [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQL+VV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKV+KL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of MS001629.1 vs. ExPASy Swiss-Prot
Match: Q9UUC8 (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-13
Identity = 31/105 (29.52%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 10  QKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKAFYKNNNERV 69
           +++  SYC+WGGSS+G++ F+ ++L +  +++  +E      +G+HP ++A+Y    E+V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 70  VCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWN 115
           +C + +    I   A+  R++ G K   ++    + NPSV+G W+
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIWS 128

[Close]

BLAST of MS001629.1 vs. ExPASy Swiss-Prot
Match: Q758S3 (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-12
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPAFKEKNPQLEVVTELIRGQHPHLKAFYKN 65
           ++  +K+ + YC+WGGSS+G+R F+ S +L  + EK PQ++    + +  HP LKA Y N
Sbjct: 20  IFPCKKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQFEV-VAKAGHPVLKAEYIN 79

Query: 66  NNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTK-------NPSVQGTWN 115
              + +CV+NL+ + + L    LR + G ++     RH  K       N SV+G W+
Sbjct: 80  GLNKAICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVWS 130

[Close]

BLAST of MS001629.1 vs. ExPASy Swiss-Prot
Match: Q06090 (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 38/115 (33.04%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPAFKEKNP--QLEVVTELIRGQHPHLKAFY 65
           V+  +K+ + +C+WGGSS G+R F+ S +L  + ++ P  Q EV+    +  HP L+A Y
Sbjct: 20  VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEVMR---KSGHPLLRAEY 79

Query: 66  KNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRH---VTKNPSVQGTWN 115
            N  E+V+CV+NL+ + +      L+++ G  +++ RT++    + N SV+G W+
Sbjct: 80  TNGREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIWS 130

[Close]

BLAST of MS001629.1 vs. ExPASy Swiss-Prot
Match: Q99N89 (39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-08
Identity = 37/110 (33.64%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKAFYK 63
           R V QLQ+L +S      SSRG R F++ ++  F  +NP + V         P + A Y 
Sbjct: 21  RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80

Query: 64  NNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTW 114
           N   R   V +   EEI     +L +  G  V+++R    T NPS+QG W
Sbjct: 81  NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

[Close]

BLAST of MS001629.1 vs. ExPASy Swiss-Prot
Match: Q8N983 (39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-08
Identity = 36/111 (32.43%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKAFYK 63
           R V QLQ+L  S    G SSRG R F++ ++  F  +NP + +         P + A Y 
Sbjct: 21  RYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYL 80

Query: 64  NNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWN 115
           N   R   +     EEI+    +L +  G  V+++R    T NPS+QG W+
Sbjct: 81  NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWH 131

[Close]

BLAST of MS001629.1 vs. ExPASy TrEMBL
Match: A0A6J1DVX7 (54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111024881 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.0e-63
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKV+KLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of MS001629.1 vs. ExPASy TrEMBL
Match: A0A6J1IW90 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479166 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFMDS+LPAF+EKNPQL++VTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYK+NN RV+CVKN+DPE+I+LHA RLRNALGRKV+KLRTRHVTKNPS QGTWNTDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of MS001629.1 vs. ExPASy TrEMBL
Match: A0A6J1EWV2 (54S ribosomal protein L51, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439127 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.4e-57
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQL+VV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKV+KL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of MS001629.1 vs. ExPASy TrEMBL
Match: A0A6J1I8W1 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470732 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.0e-57
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQL+VV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKV+KL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]

BLAST of MS001629.1 vs. ExPASy TrEMBL
Match: A0A0A0KU37 (L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011700 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.9e-56
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYCDWGGSSRGIRAFM+SQ+PAFKEKNPQLEVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
           F+++NN RVVCVKN+DPEEI+  A+RLRN+LGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of MS001629.1 vs. TAIR 10
Match: AT3G59650.1 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.5e-55
Identity = 96/119 (80.67%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LPA KEKNPQLEV+TEL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 120
            Y+N NERVVCVKN+DPEE+ L+A RLRN+LGRKVVKLRTRHVTK+PSVQGTW T V+F
Sbjct: 61  IYRNRNERVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRTRHVTKHPSVQGTWTTAVKF 119

[Close]

BLAST of MS001629.1 vs. TAIR 10
Match: AT3G59650.2 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 195.3 bits (495), Expect = 2.8e-50
Identity = 96/146 (65.75%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LPA KEKNPQLEV+TEL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYK---------------------------NNNERVVCVKNLDPEEINLHAVRLRNALGR 120
            Y                            N NERVVCVKN+DPEE+ L+A RLRN+LGR
Sbjct: 61  IYSMYISPLLNTILIQRLLILAISLAQFIGNRNERVVCVKNMDPEEVLLNATRLRNSLGR 120

The following BLAST results are available for this feature:

BLAST of MS001629.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158383.1	1.0e-62	99.16	54S ribosomal protein L51, mitochondrial [Momordica charantia]	[more]
XP_038877046.1	3.5e-58	92.44	54S ribosomal protein L51, mitochondrial [Benincasa hispida]	[more]
KAG7029113.1	3.8e-57	90.76	mrpl51 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022979453.1	5.0e-57	87.39	54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima]	[more]
XP_022932626.1	1.1e-56	89.92	54S ribosomal protein L51, mitochondrial [Cucurbita moschata]	[more]

BLAST of MS001629.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UUC8	4.6e-13	29.52	54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q758S3	2.3e-12	34.19	54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /...	[more]
Q06090	2.8e-10	33.04	54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q99N89	5.8e-08	33.64	39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1...	[more]
Q8N983	7.6e-08	32.43	39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 ...	[more]

BLAST of MS001629.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVX7	5.0e-63	99.16	54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IW90	2.4e-57	87.39	54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EWV2	5.4e-57	89.92	54S ribosomal protein L51, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8W1	7.0e-57	89.92	54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0KU37	5.9e-56	87.39	L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0117...	[more]

BLAST of MS001629.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59650.1	6.5e-55	80.67	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	[more]
AT3G59650.2	2.8e-50	65.75	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 18..91 e-value: 1.2E-19 score: 81.2
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 26..76 e-value: 3.4E-11 score: 42.9
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..118 e-value: 1.3E-43 score: 150.3
IPR039927	39S ribosomal protein L43/54S ribosomal protein L51	PANTHER	PTHR21396	39S RIBOSOMAL PROTEIN L43	coord: 1..117
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 8..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001629	MS001629	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001629.1-cds	MS001629.1-cds-scaffold377:69488..69657	CDS
MS001629.1-cds	MS001629.1-cds-scaffold377:69749..69855	CDS
MS001629.1-cds	MS001629.1-cds-scaffold377:71413..71492	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001629.1	MS001629.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
molecular_function	GO:0003735	structural constituent of ribosome