MS000971.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS000971.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Gelsolin-related protein of 125 kDa isoform X1
Location	scaffold36: 559969 .. 560928 (+)
Sequence length	960
RNA-Seq Expression	MS000971.1
Synteny	MS000971.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTAGACGATGTCCACTGCAGACCTGTGGAGTTTCATTTGTGGCCATAGCCCACAGCGCCATCTCAAGAGCCCAGGATCTTGATGGACGGCTGGGTTCAACCACAAGAAAGATGATCCGGCTAGCCAATATAATGAACCCTTTGATTTTTGCCCTGCACTATCAGTTCGTACTGGTCCTCACCTTCATTGATGATGGTTTTCTTGCAACTGCAAACATTGTGGAGAAGATCTTTCCTCCATCCAAACTTGTTTTTGATAAGATTGACGACCTTCTTCTTCTGATTGAAACTTTGCCAGTAAAATTTGATGATGCTGTTGACAAGCTCCCCTGTTTCAACCAGGTTCCGCTTCTGGATTGGGCAGTGATTCACGCCATATCATTGCTCAAGTTCATGATAGCCATACTTATGAACTGGGTAAAAGATGGTACCAGAGAGAAGGAAATTTTGGTCGATATGAACTGTAACGAGGGACGCAATGCATCTGAATCAGCTGACATGGATGAGAAAATGAAATCCGACACCACAAAGAACACTAGTTATAAAGAAGTTCAGAAAAAAGGGGTGGAATATGATGAAGATTGCAAAGAAAATGAGAAGGGCACTTACAAAAAAGCCATGGAAGATGGAAGAAAAGAAGCAGTGGGAGATAAAGCAGACTGCAAAAACGATGAGAAGAAAGTGGAGAAGGGAATAAAAGAGAGTTCCAAAATGGAAGCATCTGTGGGAAAAGCTGAAGGAAATGGAGAAATTGCAGATCACAGCAACAAAGAGAAATCAGAAGGGGAAAATGAGAAGGAAGAAGAAGAGGCAATGGATTACGAAAAAGAAGAGGGAAAAAAAGGAAGAATGGAGAAAAAGGATGACATTTTGGAACTGTTCGAGACTGCTTGGCTCATGAAACCAACAGGAAAGGGGAAAGGAAACTTGCTGCCACGTTCAGCTTCATATGTA

mRNA sequence

ATGAGTTCTAGACGATGTCCACTGCAGACCTGTGGAGTTTCATTTGTGGCCATAGCCCACAGCGCCATCTCAAGAGCCCAGGATCTTGATGGACGGCTGGGTTCAACCACAAGAAAGATGATCCGGCTAGCCAATATAATGAACCCTTTGATTTTTGCCCTGCACTATCAGTTCGTACTGGTCCTCACCTTCATTGATGATGGTTTTCTTGCAACTGCAAACATTGTGGAGAAGATCTTTCCTCCATCCAAACTTGTTTTTGATAAGATTGACGACCTTCTTCTTCTGATTGAAACTTTGCCAGTAAAATTTGATGATGCTGTTGACAAGCTCCCCTGTTTCAACCAGGTTCCGCTTCTGGATTGGGCAGTGATTCACGCCATATCATTGCTCAAGTTCATGATAGCCATACTTATGAACTGGGTAAAAGATGGTACCAGAGAGAAGGAAATTTTGGTCGATATGAACTGTAACGAGGGACGCAATGCATCTGAATCAGCTGACATGGATGAGAAAATGAAATCCGACACCACAAAGAACACTAGTTATAAAGAAGTTCAGAAAAAAGGGGTGGAATATGATGAAGATTGCAAAGAAAATGAGAAGGGCACTTACAAAAAAGCCATGGAAGATGGAAGAAAAGAAGCAGTGGGAGATAAAGCAGACTGCAAAAACGATGAGAAGAAAGTGGAGAAGGGAATAAAAGAGAGTTCCAAAATGGAAGCATCTGTGGGAAAAGCTGAAGGAAATGGAGAAATTGCAGATCACAGCAACAAAGAGAAATCAGAAGGGGAAAATGAGAAGGAAGAAGAAGAGGCAATGGATTACGAAAAAGAAGAGGGAAAAAAAGGAAGAATGGAGAAAAAGGATGACATTTTGGAACTGTTCGAGACTGCTTGGCTCATGAAACCAACAGGAAAGGGGAAAGGAAACTTGCTGCCACGTTCAGCTTCATATGTA

Coding sequence (CDS)

ATGAGTTCTAGACGATGTCCACTGCAGACCTGTGGAGTTTCATTTGTGGCCATAGCCCACAGCGCCATCTCAAGAGCCCAGGATCTTGATGGACGGCTGGGTTCAACCACAAGAAAGATGATCCGGCTAGCCAATATAATGAACCCTTTGATTTTTGCCCTGCACTATCAGTTCGTACTGGTCCTCACCTTCATTGATGATGGTTTTCTTGCAACTGCAAACATTGTGGAGAAGATCTTTCCTCCATCCAAACTTGTTTTTGATAAGATTGACGACCTTCTTCTTCTGATTGAAACTTTGCCAGTAAAATTTGATGATGCTGTTGACAAGCTCCCCTGTTTCAACCAGGTTCCGCTTCTGGATTGGGCAGTGATTCACGCCATATCATTGCTCAAGTTCATGATAGCCATACTTATGAACTGGGTAAAAGATGGTACCAGAGAGAAGGAAATTTTGGTCGATATGAACTGTAACGAGGGACGCAATGCATCTGAATCAGCTGACATGGATGAGAAAATGAAATCCGACACCACAAAGAACACTAGTTATAAAGAAGTTCAGAAAAAAGGGGTGGAATATGATGAAGATTGCAAAGAAAATGAGAAGGGCACTTACAAAAAAGCCATGGAAGATGGAAGAAAAGAAGCAGTGGGAGATAAAGCAGACTGCAAAAACGATGAGAAGAAAGTGGAGAAGGGAATAAAAGAGAGTTCCAAAATGGAAGCATCTGTGGGAAAAGCTGAAGGAAATGGAGAAATTGCAGATCACAGCAACAAAGAGAAATCAGAAGGGGAAAATGAGAAGGAAGAAGAAGAGGCAATGGATTACGAAAAAGAAGAGGGAAAAAAAGGAAGAATGGAGAAAAAGGATGACATTTTGGAACTGTTCGAGACTGCTTGGCTCATGAAACCAACAGGAAAGGGGAAAGGAAACTTGCTGCCACGTTCAGCTTCATATGTA

Protein sequence

MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVLVLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLLDWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESADMDEKMKSDTTKNTSYKEVQKKGVEYDEDCKENEKGTYKKAMEDGRKEAVGDKADCKNDEKKVEKGIKESSKMEASVGKAEGNGEIADHSNKEKSEGENEKEEEEAMDYEKEEGKKGRMEKKDDILELFETAWLMKPTGKGKGNLLPRSASYV

Homology

[Close]

BLAST of MS000971.1 vs. NCBI nr
Match: XP_022131349.1 (uncharacterized protein LOC111004599 [Momordica charantia])

HSP 1 Score: 592.8 bits (1527), Expect = 1.8e-165
Identity = 314/320 (98.12%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRRCPLQTCGVSFVAIAHSAISRAQ LDGRLGSTTRKMIRLANIMNPLIFALHYQFVL
Sbjct: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQVLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
           VLTFIDDGFLATANIVE IFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL
Sbjct: 61  VLTFIDDGFLATANIVEXIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESADMDEKMKSDTTKN 180
           DWAVIHAISLLKFMIAILMNWVKDG REKEILVDMNCNEGRNASESADMDEKMKSDTTKN
Sbjct: 121 DWAVIHAISLLKFMIAILMNWVKDGIREKEILVDMNCNEGRNASESADMDEKMKSDTTKN 180

Query: 181 TSYKEVQKKGVEYDEDCKENEKGTYKKAMEDGRKEAVGDKADCKNDEKKVEKGIKESSKM 240
           TSYKEVQKKGVEYDEDCKENEKGTYKKAME+GRKEAVGDKADCKNDEKKVEKGIKESSKM
Sbjct: 181 TSYKEVQKKGVEYDEDCKENEKGTYKKAMEEGRKEAVGDKADCKNDEKKVEKGIKESSKM 240

Query: 241 EASVGKAEGNGEIADHSNKEKSEGENEKEEEEAMDYEKEEGKKGRMEKKDDILELFETAW 300
           EASVGKAEGNGEIADHSNKEKSEGE+EKEEEEAMDY KEEGKKGRMEKKDDILELFETAW
Sbjct: 241 EASVGKAEGNGEIADHSNKEKSEGEDEKEEEEAMDYGKEEGKKGRMEKKDDILELFETAW 300

Query: 301 LMKPTGKGKGNLLPRSASYV 321
           LMKPTGKGKGNLLPRSASYV
Sbjct: 301 LMKPTGKGKGNLLPRSASYV 320

[Close]

BLAST of MS000971.1 vs. NCBI nr
Match: XP_038884034.1 (myelin transcription factor 1 [Benincasa hispida] >XP_038884035.1 myelin transcription factor 1 [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 7.8e-89
Identity = 219/366 (59.84%), Postives = 248/366 (67.76%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRR PLQTC VSF+A+AHS  SRAQ+LDGRLGS TRKM+R+A +M PLIF L YQ +L
Sbjct: 1   MSSRRRPLQTCVVSFLAVAHSTCSRAQNLDGRLGSITRKMVRIAKLMKPLIFVLQYQCLL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
           VL+FIDD  LA ANI+EKIFPP KLVFDKID LL LIET P KFDDAVD++PCFNQV LL
Sbjct: 61  VLSFIDDRLLAIANILEKIFPPFKLVFDKIDHLLHLIETFPSKFDDAVDEIPCFNQVLLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESAD------------ 180
           DW V HAISLLKFMI ILMNW +DGTREKEILVDMN  EGR  SES D            
Sbjct: 121 DWTVTHAISLLKFMITILMNWGRDGTREKEILVDMNYKEGRK-SESTDKSECCSEGIVSS 180

Query: 181 ----------MDEKMKSDTTKNTSYKEVQKKGVEYDEDCKENEKGTYKKAMEDGRKEAVG 240
                     MDEKMKS++ K T  KEV K     DED KENEK T    +E G +  + 
Sbjct: 181 VSETQQAEAAMDEKMKSNSVKGTC-KEVLK----MDEDSKENEKST--NGVEKGTRNEMD 240

Query: 241 DKADCKNDE----KKVEKGIK-----ESSK-----------MEASVGKAEGNGEIADHSN 300
           DK DCKN+E    K+VEKGI+     ES K           ME SV K EGN EI D  N
Sbjct: 241 DKEDCKNNEKGNSKEVEKGIEVVEDNESCKKDENNENKMIRMEESVEKTEGNEEIPDEGN 300

Query: 301 ----KEKSEGENEKEEEEAMDYEKEEGKKGRMEKKDDILELFETAWLMKPTGKGKGNLLP 321
               +EK E E E+EEE  MDYE E+G  G ME    ILELFETAWLMKPT +G+GN++P
Sbjct: 301 SRVKEEKEEEEEEEEEEGLMDYESEKGSNGSME----ILELFETAWLMKPTIRGQGNMMP 354

[Close]

BLAST of MS000971.1 vs. NCBI nr
Match: KAA0061016.1 (gelsolin-related protein of 125 kDa isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 321.2 bits (822), Expect = 9.8e-84
Identity = 207/366 (56.56%), Postives = 242/366 (66.12%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRR PLQTCGVSF+A+AHS  SRAQ+LDGRLGS TRKM+ +A +MNPLIF L YQ +L
Sbjct: 1   MSSRRRPLQTCGVSFLAVAHSTCSRAQNLDGRLGSITRKMVWIAKLMNPLIFLLKYQSLL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
            L+FIDD  LA  NI+EK+FPP KL+FDKIDDLL LIET P KFDDAVD++PCFNQV LL
Sbjct: 61  ALSFIDDRLLAITNILEKVFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESAD------------ 180
           DW V HAISLLK MI ILMNW +D  REKEILVDMN  E RN SES D            
Sbjct: 121 DWTVTHAISLLKSMITILMNWGRDVAREKEILVDMNYKESRNGSESTDKSGCCSEGIVSS 180

Query: 181 --------MDEKMKSDTTKNTSYKEVQKKGV----EYDEDCKENEKGTYKKAMEDGRKEA 240
                   MD KMKS+  K  SYKE+ K G+    + DED KENEK         G ++ 
Sbjct: 181 ISETQRASMDVKMKSNPMKG-SYKEILKMGINGVLKDDEDYKENEK--------KGTRDE 240

Query: 241 VGDKADCKNDE----KKVEKGI-----KESSK-----------MEASVGKAEGNGEIADH 300
           + DK DCKNDE    K+VEKGI     KES K           +E SV KA+GN EI D 
Sbjct: 241 INDKEDCKNDENGNSKEVEKGIEMMEDKESHKKDENNEIHKANLEESVDKAKGNEEIRDD 300

Query: 301 SNKEK--SEGENEKEEEEAMDYEKEEGKKG-RMEKKDDILELFETAWLMKPTGKGKGNLL 320
            + ++  +  E  KEEE  MDYE E+G  G R   +D ILELFE+AWLMKPT KGKG+ +
Sbjct: 301 QSHKRIINNEEKSKEEEGVMDYESEKGNNGSRKNDEDGILELFESAWLMKPTIKGKGDSM 357

[Close]

BLAST of MS000971.1 vs. NCBI nr
Match: XP_008444439.1 (PREDICTED: uncharacterized protein LOC103487764 [Cucumis melo] >XP_008444440.1 PREDICTED: uncharacterized protein LOC103487764 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 3.7e-83
Identity = 208/366 (56.83%), Postives = 242/366 (66.12%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRR PLQTCGVSF+A+AHS  SRAQ+LDGRLGS TRKM+ +A +MNPLIF L YQ +L
Sbjct: 1   MSSRRRPLQTCGVSFLAVAHSTCSRAQNLDGRLGSITRKMVWIAKLMNPLIFLLKYQSLL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
            L+FIDD  LA ANI+EKIFPP KL+FDKIDDLL LIET P KFDDAVD++PCFNQV LL
Sbjct: 61  ALSFIDDRLLAIANILEKIFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESAD------------ 180
           DW V HAISLLK MI ILMNW +D  REKEILVDMN  E RN SES D            
Sbjct: 121 DWTVTHAISLLKSMITILMNWGRDVAREKEILVDMNYKESRNGSESTDKSGCCSEGIVSS 180

Query: 181 --------MDEKMKSDTTKNTSYKEVQKKGV----EYDEDCKENEKGTYKKAMEDGRKEA 240
                   MD KMKS+  K  SYKE+ K G+    + DED KENEK         G ++ 
Sbjct: 181 ISETQRASMDVKMKSNPMKG-SYKEILKMGINGVLKDDEDYKENEK--------KGTRDK 240

Query: 241 VGDKADCKNDE----KKVEKGI-----KESSK-----------MEASVGKAEGNGEIADH 300
           + DK DCKNDE    K+VEKGI     KES K           +E SV KA+GN EI D 
Sbjct: 241 INDKEDCKNDENGNSKEVEKGIEMMEDKESHKKDENNEIHKANLEESVDKAKGNEEIRDD 300

Query: 301 SNKEK--SEGENEKEEEEAMDYEKEEGKKG-RMEKKDDILELFETAWLMKPTGKGKGNLL 320
            + ++  +  E  KEEE  MD E E+G  G R   +D ILELFE+AWLMKPT KGKG+ +
Sbjct: 301 QSHKRIINNEEKSKEEEGVMDNESEKGNNGSRKNGEDGILELFESAWLMKPTIKGKGDSM 357

[Close]

BLAST of MS000971.1 vs. NCBI nr
Match: XP_031736455.1 (gelsolin-related protein of 125 kDa [Cucumis sativus] >KAE8652048.1 hypothetical protein Csa_018704 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-82
Identity = 213/375 (56.80%), Postives = 247/375 (65.87%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRR PLQTCGVSF+A+AHS  SRAQ+LDGRLGS TRKM+ +A +MNPLIF L YQ +L
Sbjct: 1   MSSRRRPLQTCGVSFLAVAHSTCSRAQNLDGRLGSITRKMVWIAKLMNPLIFLLKYQSLL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQ-VPL 120
           VL FIDD  LA AN +EKIFPPSKLVFDKID LL LIET P KFDDAVDK+PCFNQ V L
Sbjct: 61  VLCFIDDRLLAIANTLEKIFPPSKLVFDKIDVLLHLIETFPSKFDDAVDKIPCFNQEVLL 120

Query: 121 LDWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESAD----------- 180
           LDW V H ISLL FMI ILMNW +D  REKEILVDMN  E  N S+S D           
Sbjct: 121 LDWTVTHVISLLNFMITILMNWGRDVAREKEILVDMNYKESCNGSKSIDKSKCCSEGIVS 180

Query: 181 ---------MDEKMKSDTTKNTSYKEVQKKG----VEYDEDCKENEKGTYKKAMEDGRKE 240
                    M+EKMKS+  K  SY E+ K G    ++ DE CKENEK         G ++
Sbjct: 181 SLSEIQRTSMNEKMKSNPMKG-SYAEILKMGTKGVLKDDEGCKENEK--------KGTRD 240

Query: 241 AVGDKADCKNDEK----KVEKGI-----KES-----------SKMEASVGKAEGNGEIAD 300
            + +K DCK DEK    +VEKGI     KES           +KME SVGKA+GN EI D
Sbjct: 241 EINEKEDCKKDEKGNSNRVEKGIEVMEDKESYKKDENNEIHNAKMEESVGKAKGNEEIRD 300

Query: 301 H-------SNKEKSEGENEKEEEE----AMDYEKEEGKKGRMEK-KDDILELFETAWLMK 319
                   +N+EKS+ E E+EEEE     MD E E+G KG  E  +D+ILELFE+AWLMK
Sbjct: 301 DQSHKRIINNEEKSKEEEEEEEEEEEEGVMDNESEKGNKGSKENAEDEILELFESAWLMK 360

[Close]

BLAST of MS000971.1 vs. ExPASy TrEMBL
Match: A0A6J1BQ09 (uncharacterized protein LOC111004599 OS=Momordica charantia OX=3673 GN=LOC111004599 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 8.5e-166
Identity = 314/320 (98.12%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRRCPLQTCGVSFVAIAHSAISRAQ LDGRLGSTTRKMIRLANIMNPLIFALHYQFVL
Sbjct: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQVLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
           VLTFIDDGFLATANIVE IFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL
Sbjct: 61  VLTFIDDGFLATANIVEXIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESADMDEKMKSDTTKN 180
           DWAVIHAISLLKFMIAILMNWVKDG REKEILVDMNCNEGRNASESADMDEKMKSDTTKN
Sbjct: 121 DWAVIHAISLLKFMIAILMNWVKDGIREKEILVDMNCNEGRNASESADMDEKMKSDTTKN 180

Query: 181 TSYKEVQKKGVEYDEDCKENEKGTYKKAMEDGRKEAVGDKADCKNDEKKVEKGIKESSKM 240
           TSYKEVQKKGVEYDEDCKENEKGTYKKAME+GRKEAVGDKADCKNDEKKVEKGIKESSKM
Sbjct: 181 TSYKEVQKKGVEYDEDCKENEKGTYKKAMEEGRKEAVGDKADCKNDEKKVEKGIKESSKM 240

Query: 241 EASVGKAEGNGEIADHSNKEKSEGENEKEEEEAMDYEKEEGKKGRMEKKDDILELFETAW 300
           EASVGKAEGNGEIADHSNKEKSEGE+EKEEEEAMDY KEEGKKGRMEKKDDILELFETAW
Sbjct: 241 EASVGKAEGNGEIADHSNKEKSEGEDEKEEEEAMDYGKEEGKKGRMEKKDDILELFETAW 300

Query: 301 LMKPTGKGKGNLLPRSASYV 321
           LMKPTGKGKGNLLPRSASYV
Sbjct: 301 LMKPTGKGKGNLLPRSASYV 320

[Close]

BLAST of MS000971.1 vs. ExPASy TrEMBL
Match: A0A5A7V3D3 (Gelsolin-related protein of 125 kDa isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001510 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 4.8e-84
Identity = 207/366 (56.56%), Postives = 242/366 (66.12%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRR PLQTCGVSF+A+AHS  SRAQ+LDGRLGS TRKM+ +A +MNPLIF L YQ +L
Sbjct: 1   MSSRRRPLQTCGVSFLAVAHSTCSRAQNLDGRLGSITRKMVWIAKLMNPLIFLLKYQSLL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
            L+FIDD  LA  NI+EK+FPP KL+FDKIDDLL LIET P KFDDAVD++PCFNQV LL
Sbjct: 61  ALSFIDDRLLAITNILEKVFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESAD------------ 180
           DW V HAISLLK MI ILMNW +D  REKEILVDMN  E RN SES D            
Sbjct: 121 DWTVTHAISLLKSMITILMNWGRDVAREKEILVDMNYKESRNGSESTDKSGCCSEGIVSS 180

Query: 181 --------MDEKMKSDTTKNTSYKEVQKKGV----EYDEDCKENEKGTYKKAMEDGRKEA 240
                   MD KMKS+  K  SYKE+ K G+    + DED KENEK         G ++ 
Sbjct: 181 ISETQRASMDVKMKSNPMKG-SYKEILKMGINGVLKDDEDYKENEK--------KGTRDE 240

Query: 241 VGDKADCKNDE----KKVEKGI-----KESSK-----------MEASVGKAEGNGEIADH 300
           + DK DCKNDE    K+VEKGI     KES K           +E SV KA+GN EI D 
Sbjct: 241 INDKEDCKNDENGNSKEVEKGIEMMEDKESHKKDENNEIHKANLEESVDKAKGNEEIRDD 300

Query: 301 SNKEK--SEGENEKEEEEAMDYEKEEGKKG-RMEKKDDILELFETAWLMKPTGKGKGNLL 320
            + ++  +  E  KEEE  MDYE E+G  G R   +D ILELFE+AWLMKPT KGKG+ +
Sbjct: 301 QSHKRIINNEEKSKEEEGVMDYESEKGNNGSRKNDEDGILELFESAWLMKPTIKGKGDSM 357

[Close]

BLAST of MS000971.1 vs. ExPASy TrEMBL
Match: A0A1S3BAB2 (uncharacterized protein LOC103487764 OS=Cucumis melo OX=3656 GN=LOC103487764 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.8e-83
Identity = 208/366 (56.83%), Postives = 242/366 (66.12%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSSRR PLQTCGVSF+A+AHS  SRAQ+LDGRLGS TRKM+ +A +MNPLIF L YQ +L
Sbjct: 1   MSSRRRPLQTCGVSFLAVAHSTCSRAQNLDGRLGSITRKMVWIAKLMNPLIFLLKYQSLL 60

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
            L+FIDD  LA ANI+EKIFPP KL+FDKIDDLL LIET P KFDDAVD++PCFNQV LL
Sbjct: 61  ALSFIDDRLLAIANILEKIFPPFKLIFDKIDDLLHLIETFPSKFDDAVDEIPCFNQVLLL 120

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESAD------------ 180
           DW V HAISLLK MI ILMNW +D  REKEILVDMN  E RN SES D            
Sbjct: 121 DWTVTHAISLLKSMITILMNWGRDVAREKEILVDMNYKESRNGSESTDKSGCCSEGIVSS 180

Query: 181 --------MDEKMKSDTTKNTSYKEVQKKGV----EYDEDCKENEKGTYKKAMEDGRKEA 240
                   MD KMKS+  K  SYKE+ K G+    + DED KENEK         G ++ 
Sbjct: 181 ISETQRASMDVKMKSNPMKG-SYKEILKMGINGVLKDDEDYKENEK--------KGTRDK 240

Query: 241 VGDKADCKNDE----KKVEKGI-----KESSK-----------MEASVGKAEGNGEIADH 300
           + DK DCKNDE    K+VEKGI     KES K           +E SV KA+GN EI D 
Sbjct: 241 INDKEDCKNDENGNSKEVEKGIEMMEDKESHKKDENNEIHKANLEESVDKAKGNEEIRDD 300

Query: 301 SNKEK--SEGENEKEEEEAMDYEKEEGKKG-RMEKKDDILELFETAWLMKPTGKGKGNLL 320
            + ++  +  E  KEEE  MD E E+G  G R   +D ILELFE+AWLMKPT KGKG+ +
Sbjct: 301 QSHKRIINNEEKSKEEEGVMDNESEKGNNGSRKNGEDGILELFESAWLMKPTIKGKGDSM 357

[Close]

BLAST of MS000971.1 vs. ExPASy TrEMBL
Match: A0A6J1GHV9 (uncharacterized protein LOC111454325 OS=Cucurbita moschata OX=3662 GN=LOC111454325 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 2.8e-76
Identity = 192/326 (58.90%), Postives = 225/326 (69.02%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSS R PL TC VSF+AIAH   SRAQ+LDG LGSTTRKM+++  ++ P+I  L YQ+ L
Sbjct: 12  MSSPRRPLHTCSVSFLAIAHGIFSRAQNLDGWLGSTTRKMVQITKLVKPVILVLQYQWSL 71

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
            L+FIDD  LA +N VEKIFPPS+LVFDKIDD+L L+ET P KF DAVDKLPCFNQV LL
Sbjct: 72  FLSFIDDRLLAISNFVEKIFPPSRLVFDKIDDVLHLVETFPGKFADAVDKLPCFNQVLLL 131

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESADMDE---KMKSDT 180
           +WAV HAISLL+FMI ILMN  +DGTREKEILVDMN N+GRN  ESA   E      S+T
Sbjct: 132 EWAVTHAISLLEFMITILMNLGRDGTREKEILVDMNYNKGRNGPESAVKSEGTISCVSET 191

Query: 181 TK---NTSYKEVQKKGVEYDEDCKENEKGTYKKAMEDGRKEAVGDKADCKNDEKKVEKGI 240
            +   N S KEV K G E  ED   + KGTY +AME   KE  G+K   K   KKVE   
Sbjct: 192 QQGAMNGSCKEVVKTGREGKED---DCKGTYNRAMEG--KEEFGNKE--KGSTKKVEGSE 251

Query: 241 KESSKMEASVGKAEGNGEIADHSNKEKSEGENEKEEEEAMDYEKEEGKKGRMEKKDDILE 300
              +KME    KAEGN        K K EG  + E E     E+EEG  G ++K+DDILE
Sbjct: 252 SGKAKME----KAEGN-----EGMKSKKEGVKDCEYE-----EEEEGSNGSIQKEDDILE 311

Query: 301 LFETAWLMKPTGKGKGNLLPRSASYV 321
           LFET+WLMKPTGK KGNL+PRSAS++
Sbjct: 312 LFETSWLMKPTGKPKGNLMPRSASFL 316

[Close]

BLAST of MS000971.1 vs. ExPASy TrEMBL
Match: A0A6J1KSS3 (uncharacterized protein LOC111496109 OS=Cucurbita maxima OX=3661 GN=LOC111496109 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 5.8e-74
Identity = 185/328 (56.40%), Postives = 221/328 (67.38%), Query Frame = 0


Query: 1   MSSRRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTTRKMIRLANIMNPLIFALHYQFVL 60
           MSS R PL TC VSF+AIAH   SRAQ+LDG LGSTTRKM+++  ++ PLI  L YQ+ L
Sbjct: 12  MSSPRRPLHTCSVSFLAIAHGIFSRAQNLDGWLGSTTRKMVQITKLVKPLILVLQYQWSL 71

Query: 61  VLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLPCFNQVPLL 120
            L+FIDD  LA +N VE++FPPS+LVFDKIDD+L ++ET P KF DAVDKLPCFNQV  L
Sbjct: 72  FLSFIDDRLLAISNFVEQVFPPSRLVFDKIDDVLHMVETFPGKFADAVDKLPCFNQVLFL 131

Query: 121 DWAVIHAISLLKFMIAILMNWVKDGTREKEILVDMNCNEGRNASESADMDEKMKS----- 180
           +WAV HAI+LL++MI ILMN  +DGTREKEILVDMN N+ RN SESA   E   S     
Sbjct: 132 EWAVTHAITLLEYMITILMNLGRDGTREKEILVDMNYNKSRNGSESAVKSEGTLSCVCET 191

Query: 181 -DTTKNTSYKEVQKKGVEYDEDCKENEKGTYKKAMEDGRKEAVGDKADCKNDEKKVEKGI 240
                N S KEV K G E  ED   + KGTY +AME   KE  G+K   K   KKVE   
Sbjct: 192 QQGAMNGSSKEVVKMGREGKED---DCKGTYNRAMEG--KEEFGNKE--KGSTKKVEGSE 251

Query: 241 KESSKMEASVGKAEGNGEIADHSNKEKSEGENEKEEE--EAMDYEKEEGKKGRMEKKDDI 300
              +KME    KAEGN            EG   K+EE  +  D E+EEG  G ++K+DDI
Sbjct: 252 SGKAKME----KAEGN------------EGMKSKKEEVKDCEDEEEEEGSHGSIQKEDDI 311

Query: 301 LELFETAWLMKPTGKGKGNLLPRSASYV 321
           LELFET+WLMKPTGK KGNL+ RSAS++
Sbjct: 312 LELFETSWLMKPTGKPKGNLMTRSASFL 316

[Close]

BLAST of MS000971.1 vs. TAIR 10
Match: AT1G67540.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-22
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = 0


Query: 4   RRCPLQTCGVSFVAIAHSAISRAQDLDGRLGSTT----RKMIRLANIMNPLIFALHYQFV 63
           RR PL+TCG   +++     +R+Q L  +  + +    RK+         +    H  F+
Sbjct: 10  RRRPLETCGGVILSMTRVLYTRSQTLMKKKKNLSSWLLRKLFEFVIFFVSMTSPFHRHFL 69

Query: 64  LVLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLIETLPVKFDDAVDKLP-CFNQVP 123
            VL+  DD  LA  + +E  FP S  VF KI DLL+++ETLP K D  + KLP   ++V 
Sbjct: 70  AVLSVADDHILALQDAIETYFPSSSNVFVKIFDLLIIVETLPEKLDGVLKKLPSLMSRVA 129

Query: 124 LLDWAVIHAISLLKFMIAILMNW--VKDGTREKEILVDMNCNEGRNASESADMDEKMKSD 183
            LDW ++H IS L  ++ +L  W     GT EKEI VD + +  R+ S S + +EK    
Sbjct: 130 WLDWLLVHVISRLGLLVNVLGRWRDKNKGTNEKEITVDRSFS--RSGSVSEEEEEKRNLG 189

Query: 184 TTKNTSYKEVQKKG 191
           T K  SYKE  ++G
Sbjct: 190 TEKKVSYKEALQRG 201

[Close]

BLAST of MS000971.1 vs. TAIR 10
Match: AT1G67540.1 (unknown protein; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-18
Identity = 60/156 (38.46%), Postives = 84/156 (53.85%), Query Frame = 0


Query: 38  RKMIRLANIMNPLIFALHYQFVLVLTFIDDGFLATANIVEKIFPPSKLVFDKIDDLLLLI 97
           RK+         +    H  F+ VL+  DD  LA  + +E  FP S  VF KI DLL+++
Sbjct: 25  RKLFEFVIFFVSMTSPFHRHFLAVLSVADDHILALQDAIETYFPSSSNVFVKIFDLLIIV 84

Query: 98  ETLPVKFDDAVDKLP-CFNQVPLLDWAVIHAISLLKFMIAILMNW--VKDGTREKEILVD 157
           ETLP K D  + KLP   ++V  LDW ++H IS L  ++ +L  W     GT EKEI VD
Sbjct: 85  ETLPEKLDGVLKKLPSLMSRVAWLDWLLVHVISRLGLLVNVLGRWRDKNKGTNEKEITVD 144

Query: 158 MNCNEGRNASESADMDEKMKSDTTKNTSYKEVQKKG 191
            + +  R+ S S + +EK    T K  SYKE  ++G
Sbjct: 145 RSFS--RSGSVSEEEEEKRNLGTEKKVSYKEALQRG 178

The following BLAST results are available for this feature:

BLAST of MS000971.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131349.1	1.8e-165	98.13	uncharacterized protein LOC111004599 [Momordica charantia]	[more]
XP_038884034.1	7.8e-89	59.84	myelin transcription factor 1 [Benincasa hispida] >XP_038884035.1 myelin transcr...	[more]
KAA0061016.1	9.8e-84	56.56	gelsolin-related protein of 125 kDa isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008444439.1	3.7e-83	56.83	PREDICTED: uncharacterized protein LOC103487764 [Cucumis melo] >XP_008444440.1 P...	[more]
XP_031736455.1	1.9e-82	56.80	gelsolin-related protein of 125 kDa [Cucumis sativus] >KAE8652048.1 hypothetical...	[more]

BLAST of MS000971.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000971.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ09	8.5e-166	98.13	uncharacterized protein LOC111004599 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A5A7V3D3	4.8e-84	56.56	Gelsolin-related protein of 125 kDa isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BAB2	1.8e-83	56.83	uncharacterized protein LOC103487764 OS=Cucumis melo OX=3656 GN=LOC103487764 PE=...	[more]
A0A6J1GHV9	2.8e-76	58.90	uncharacterized protein LOC111454325 OS=Cucurbita moschata OX=3662 GN=LOC1114543...	[more]
A0A6J1KSS3	5.8e-74	56.40	uncharacterized protein LOC111496109 OS=Cucurbita maxima OX=3661 GN=LOC111496109...	[more]

BLAST of MS000971.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67540.2	6.7e-22	36.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67540.1	1.5e-18	38.46	unknown protein; Has 18 Blast hits to 18 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 254..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..266
None	No IPR available	PANTHER	PTHR37710	TRANSMEMBRANE PROTEIN	coord: 1..310

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS000971	MS000971	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS000971.1-cds	MS000971.1-cds-scaffold36:559969..560928	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS000971.1	MS000971.1-protein	polypeptide