MS000760.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS000760.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncytochrome P450, family 714, subfamily A, polypeptide 1
Locationscaffold1574: 286423 .. 286533 (+)
Sequence length111
RNA-Seq ExpressionMS000760.1
SyntenyMS000760.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGGGGAGGATCCGTGGCGGCGGCGGCGATTGACGTCGACGAGGATCTGAGGGGCTTATCGGTGGACGTGATTTCTAGGGCTTGCTTTGGGAGCTTCTACGCGAAGGGG

mRNA sequence

GAGAGGGGAGGATCCGTGGCGGCGGCGGCGATTGACGTCGACGAGGATCTGAGGGGCTTATCGGTGGACGTGATTTCTAGGGCTTGCTTTGGGAGCTTCTACGCGAAGGGG

Coding sequence (CDS)

GAGAGGGGAGGATCCGTGGCGGCGGCGGCGATTGACGTCGACGAGGATCTGAGGGGCTTATCGGTGGACGTGATTTCTAGGGCTTGCTTTGGGAGCTTCTACGCGAAGGGG

Protein sequence

ERGGSVAAAAIDVDEDLRGLSVDVISRACFGSFYAKG
Homology
BLAST of MS000760.1 vs. ExPASy Swiss-Prot
Match: Q5KQH7 (Cytochrome P450 714D1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP714D1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 9.3e-05
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 1   ERGGSVAAAAIDVDEDLRGLSVDVISRACFGSFYAKG 38
           +  G  AAA + VD DLR  S DVISRACFGS Y++G
Sbjct: 216 DAAGGAAAAEVVVDGDLRSFSFDVISRACFGSDYSRG 252

BLAST of MS000760.1 vs. ExPASy Swiss-Prot
Match: Q93Z79 (Cytochrome P450 714A1 OS=Arabidopsis thaliana OX=3702 GN=CYP714A1 PE=2 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 7.8e-04
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0

Query: 11  IDVDEDLRGLSVDVISRACFGSFYAKG 38
           I VDEDLR  S DVISRACFGS ++KG
Sbjct: 208 IIVDEDLRAASADVISRACFGSSFSKG 234

BLAST of MS000760.1 vs. TAIR 10
Match: AT5G24910.1 (cytochrome P450, family 714, subfamily A, polypeptide 1 )

HSP 1 Score: 43.1 bits (100), Expect = 5.6e-05
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0

Query: 11  IDVDEDLRGLSVDVISRACFGSFYAKG 38
           I VDEDLR  S DVISRACFGS ++KG
Sbjct: 208 IIVDEDLRAASADVISRACFGSSFSKG 234

BLAST of MS000760.1 vs. TAIR 10
Match: AT5G24900.1 (cytochrome P450, family 714, subfamily A, polypeptide 2 )

HSP 1 Score: 42.0 bits (97), Expect = 1.2e-04
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 1   ERGGSVAAAAIDVDEDLRGLSVDVISRACFGSFYAKG 38
           +RGG +    I VDEDL+ +S DVI++ACFGS ++KG
Sbjct: 195 KRGGEM-GCDIRVDEDLKDVSADVIAKACFGSSFSKG 230

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q5KQH79.3e-0559.46Cytochrome P450 714D1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP714D1 PE=1 ... [more]
Q93Z797.8e-0474.07Cytochrome P450 714A1 OS=Arabidopsis thaliana OX=3702 GN=CYP714A1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G24910.15.6e-0574.07cytochrome P450, family 714, subfamily A, polypeptide 1 [more]
AT5G24900.11.2e-0454.05cytochrome P450, family 714, subfamily A, polypeptide 2 [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS000760MS000760gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS000760.1-cdsMS000760.1-cds-scaffold1574:286423..286533CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS000760.1MS000760.1-proteinpolypeptide