MS000507.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS000507.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L9, chloroplastic
Location	scaffold44: 2144582 .. 2146973 (+)
Sequence length	654
RNA-Seq Expression	MS000507.1
Synteny	MS000507.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTGTACAATATGGTAGAAACGCACTCCGGCAAATTATTAAAGATACTAGGCTTCATACTTCTGATCAAATGATACAGCCGCTGCTATTCAGGAGCCAGGGAGTTAGACATAGGAAATTGGAAGTTATTCTGACAACAGTGAGTATGTGACTTCACTGTTTGTAGTTCTCGTACCTGGCTGTATGTTCTTATAGACGATTAACTGAATGAATCTTACTTTGATGCTTCAAAAGAGCATTGAAAAGCTTGGAAAAGCCGGCGAGACAGTTAAGGTTGCTCCTGGATTCTTTCGGAACCATCTTATGCCCAAATTGCTGGCTGTTCCAAATATCGACAAGTATGCTTATCTGATCAAGGAGCAGCGTAGGGTACTTCTCTGCAACATTGTATTACTTTTGATTGTATTTAGATATGCGTTCGTGCTGTTGTTTTCTTGATTGCAGTGATTATTATTACTTTTTTGTTCCTTCCCAAAGAGGGGGGACTGGGGAGATGAAAGAATGACCTAACCTAACAGGAAACCTTTCTTTCTTTCTTTACATGTATTACAAGCTCAATATGTTAGCTCTCGTTTGATAACCATTTTGTTTTTAGTTTTTTTATTAAGAAAATTAAGCCTTGTATACACTACTTTTACCCATGTATTTCTTTGTTTTACATATACTTTTTTAAAACAATTTCAAATTGTAAGTCAAAATTTTGAAAACTTAAAAAGTAGTTTAAAATTTTTATTTTGTTCTTGAAATTTGACTAAGAGTTCAAATGTGTTTTTTAAGAAAGGTGCAAATATATTAAAGAAATTGTGAGCAAACCAACATAATTTTCAAATTAAAAAACTAAAACAGAATGATTATCAGATGGGGCCTTAATTTTTGATACATTTGCAATTTTTAGGTGCCCACATGACAACACATTTGAGAGTTAGAAATATGCTTCATCTTTCATCTGTCTTTGGGACTTAGTGAAGGATAGGATGATTGATTTTATTCTCTGATTGCTTGGGTTTCATAAGTTGGGTGCATCTCTATAGTAGATTTCATATGTGAATTCAGATACTGTTATTTGGGTTTTGATAATTTTGATTTGTTTGAATTTAGATTTACCAACCAGTTGAGGAAGAGATCGTTAAGGTTGTGACAGTGACAAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAAACGTCTGGATAGTACTCAGCTGGTTTGTAACTCCGTTTTTTATCCATACTTATCTATGTTTTGTTCTTCTCCAATTTTCAAGTTTTTTTATTCAATTACACTCAGGAACGATTTATTAATTTGATGAGCGGACTTGATATTTGGGCTAGTTATAACAGAGCATTTAGAATATGAAAAACTGGTGCACTAAAAGATTTAGTTAGTGTCTGAAGTTGCCTTCGAAGGATCGGAAAATTTTGGATAACTATGATATTCATCCAAATGGATGTATTTATTAGTTACATTTGATGTTTGACACTTTTGTAGGTGTTAAGAAGGTTAATTGACAAGGAAAAGTTCCGTGCTCGTGCTACAAAAGATGAGCCCTTAGCATTGCAATCTTCTGTGACAGTAGATGATCTTGTTGCTGAGGTAGGCTTTGATCAATACATGTGAACTTCTTGAAATGAGAATTTAGATGACTGCTTACTTATTCCTTGCAAATGTGAATGGAACTAGGTGACCTTGTCGGTGAGGTAGGCTTTAATTGATGCTTTTCTTTTCCCCCCTTCCCCTTTAGAAAATAACCTAATAGTAAATAGCTAGTTCCTTTTTCATGTTGGATAACTTTTTCCATACAGATAATAGATTTTTTTTAAACTCTTGGGAACATGCTTAACTGATGAATCATTATGTTCTTTTGTGAGCTTTGGATTTCAGATTGCTGATATTCTATCGGGTCTTATAATTTGCCTGAGTTTTATTTAGGGTTTTTTTCCCCTCTCAATATTTGGGGTATGGTTTTATTGTGGGGGTGAGGGAAAGCTTGAGAATATAGTAATGTGAAACATGGGAATAGGATGAAGATGATTTTTGCTAGGAAGAATTCTTGTTTGCAAATTGTAAGCTAGGAAAGAAGTTGGACTTAGATTAAACATTTTGGATTGGATGCAAGACTTCGGGATGGGATGGGTGACTACTAATTTTCAGTCTCTTATCCATGGATACCTCTTTTTTCTTTTCTAAATACAGACCTACACATTTTTTTCTTTTCCGGCGTAGGTGGCACGGCAGCTTTCTGTTCAAATTACGCCCGAAAATCTACATTTACCATCCCCCCTGTCAACATGTGGTGAATATGAAGTCCCACTGCGCTTTCCAAAGTCAATCCCGTTGCCCGAAGGAAAAATCTACTGGATCCTCAAAGTTAAAGTCCGTAGTAAA

mRNA sequence

ATGGCTTGTGTACAATATGGTAGAAACGCACTCCGGCAAATTATTAAAGATACTAGGCTTCATACTTCTGATCAAATGATACAGCCGCTGCTATTCAGGAGCCAGGGAGTTAGACATAGGAAATTGGAAGTTATTCTGACAACAAGCATTGAAAAGCTTGGAAAAGCCGGCGAGACAGTTAAGGTTGCTCCTGGATTCTTTCGGAACCATCTTATGCCCAAATTGCTGGCTGTTCCAAATATCGACAAGTATGCTTATCTGATCAAGGAGCAGCGTAGGATTTACCAACCAGTTGAGGAAGAGATCGTTAAGGTTGTGACAGTGACAAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAAACGTCTGGATAGTACTCAGCTGGTGTTAAGAAGGTTAATTGACAAGGAAAAGTTCCGTGCTCGTGCTACAAAAGATGAGCCCTTAGCATTGCAATCTTCTGTGACAGTAGATGATCTTGTTGCTGAGGTGGCACGGCAGCTTTCTGTTCAAATTACGCCCGAAAATCTACATTTACCATCCCCCCTGTCAACATGTGGTGAATATGAAGTCCCACTGCGCTTTCCAAAGTCAATCCCGTTGCCCGAAGGAAAAATCTACTGGATCCTCAAAGTTAAAGTCCGTAGTAAA

Coding sequence (CDS)

ATGGCTTGTGTACAATATGGTAGAAACGCACTCCGGCAAATTATTAAAGATACTAGGCTTCATACTTCTGATCAAATGATACAGCCGCTGCTATTCAGGAGCCAGGGAGTTAGACATAGGAAATTGGAAGTTATTCTGACAACAAGCATTGAAAAGCTTGGAAAAGCCGGCGAGACAGTTAAGGTTGCTCCTGGATTCTTTCGGAACCATCTTATGCCCAAATTGCTGGCTGTTCCAAATATCGACAAGTATGCTTATCTGATCAAGGAGCAGCGTAGGATTTACCAACCAGTTGAGGAAGAGATCGTTAAGGTTGTGACAGTGACAAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAAACGTCTGGATAGTACTCAGCTGGTGTTAAGAAGGTTAATTGACAAGGAAAAGTTCCGTGCTCGTGCTACAAAAGATGAGCCCTTAGCATTGCAATCTTCTGTGACAGTAGATGATCTTGTTGCTGAGGTGGCACGGCAGCTTTCTGTTCAAATTACGCCCGAAAATCTACATTTACCATCCCCCCTGTCAACATGTGGTGAATATGAAGTCCCACTGCGCTTTCCAAAGTCAATCCCGTTGCCCGAAGGAAAAATCTACTGGATCCTCAAAGTTAAAGTCCGTAGTAAA

Protein sequence

MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKAAKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHLPSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK

Homology

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BLAST of MS000507.1 vs. NCBI nr
Match: XP_022141339.1 (uncharacterized protein LOC111011756 [Momordica charantia])

HSP 1 Score: 422.5 bits (1085), Expect = 2.1e-114
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK
Sbjct: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. NCBI nr
Match: XP_038895552.1 (50S ribosomal protein L9 [Benincasa hispida])

HSP 1 Score: 402.5 bits (1033), Expect = 2.3e-108
Identity = 204/218 (93.58%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYGRNALRQIIKDTRLH SD+M+QPLLF SQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGRNALRQIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPV+EE+VKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVDEEVVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFR RATKDEPLALQSSVTVDD+VAEVARQ SVQI PENL+L
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           PSPLSTCGEYE+PLRFPKSIPLPEGKIYW LKVKVRSK
Sbjct: 181 PSPLSTCGEYEIPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. NCBI nr
Match: XP_022968164.1 (uncharacterized protein LOC111467481 [Cucurbita maxima])

HSP 1 Score: 402.1 bits (1032), Expect = 3.0e-108
Identity = 203/218 (93.12%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYG+NAL++IIKDTRLH SD+M+QPLLF SQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE+VKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFR RATKDEPLALQSSVTVDDLVAEVARQLS+QITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           P+PL TCGEYEVPLRFPKSIPLPEGKIYW LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. NCBI nr
Match: KAG6574247.1 (hypothetical protein SDJN03_28134, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401.7 bits (1031), Expect = 3.9e-108
Identity = 203/218 (93.12%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYG+NAL++IIKDTRLH SD+M+QPLLF SQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE+VKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFR RATKDEPLALQSSVTVDDLVAEVARQLS+QITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           P+PL TCGEYEVPLRFPKSIPLPEGKIYW LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWSLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. NCBI nr
Match: XP_022944820.1 (uncharacterized protein LOC111449243 [Cucurbita moschata])

HSP 1 Score: 401.4 bits (1030), Expect = 5.1e-108
Identity = 202/218 (92.66%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYG+NAL++IIKDTRLH SD+M+QPLLF SQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPKLLAVPNIDKYAYL+KEQRRIYQPVEEE+VKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLVKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFR RATKDEPLALQSSVTVDDLVAEVARQLS+QITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           P+PL TCGEYEVPLRFPKSIPLPEGKIYW LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWSLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. ExPASy Swiss-Prot
Match: Q2IM65 (50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=rplI PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.7e-10
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 42  LEVILTTSIEKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK G+ V V PG+ RN+L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNYLLPRGLAVSANPKNVKELEHQ---------- 60

Query: 102 IVKVVTVTKEDKMKEYEKA-AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDD 161
             K V   K  K+K   +A AKRL  T + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 162 LVAEVARQLSVQITPENLHLPSPLSTCGEYEVPLRFPKSI 201
            VAE      VQ+   ++ L  P+ T GE+EVP++    +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTLGEFEVPVKLHSEV 136

[Close]

BLAST of MS000507.1 vs. ExPASy Swiss-Prot
Match: B8J801 (50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=rplI PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 42  LEVILTTSIEKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK G+ V V PG+ RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNFLLPRGLAVTANPKNVKELEHQ---------- 60

Query: 102 IVKVVTVTKEDKMKEYEKA-AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDD 161
             K V   K  K+K   +A AKRL  T + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 162 LVAEVARQLSVQITPENLHLPSPLSTCGEYEVPLRFPKSI 201
            VAE      VQ+   ++ L  P+ T GE+EVP++    +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTVGEFEVPVKLHSEV 136

[Close]

BLAST of MS000507.1 vs. ExPASy Swiss-Prot
Match: B4ULB9 (50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain K) OX=447217 GN=rplI PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 42  LEVILTTSIEKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK G+ V V PG+ RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNFLLPRGLAVTANPKNVKELEHQ---------- 60

Query: 102 IVKVVTVTKEDKMKEYEKA-AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDD 161
             K V   K  K+K   +A AKRL  T + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 162 LVAEVARQLSVQITPENLHLPSPLSTCGEYEVPLRFPKSI 201
            VAE      VQ+   ++ L  P+ T GE+EVP++    +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTVGEFEVPVKLHSEV 136

[Close]

BLAST of MS000507.1 vs. ExPASy Swiss-Prot
Match: A7H6J2 (50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=rplI PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-09
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 0


Query: 42  LEVILTTSIEKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK GE V V PG+ RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGELVDVKPGYGRNFLLPRGLAVLANPKNVRELEHQ---------- 60

Query: 102 IVKVVTVTKEDKMKEYEKA-AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDD 161
             K +   K  KMK   +A AKRL  T + L R + ++             L  SVT  D
Sbjct: 61  --KAIATAKAAKMKASAQAVAKRLAETPITLSRKVGEQD-----------KLYGSVTAMD 120

Query: 162 LVAEVARQLSVQITPENLHLPSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
            VAE      +QI    + L  P+ T G++EVP++    +    GK+    KVKV ++
Sbjct: 121 -VAEALAARGLQIDRRAIDLAEPIKTTGDFEVPVKLHSEV---VGKV----KVKVEAE 147

[Close]

BLAST of MS000507.1 vs. ExPASy Swiss-Prot
Match: Q1D289 (50S ribosomal protein L9 OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=rplI PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-08
Identity = 54/161 (33.54%), Postives = 80/161 (49.69%), Query Frame = 0


Query: 42  LEVILTTSIEKLGKAGETVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE 101
           ++VIL   IE LGK+GE V V  GF RN L+P+        K A L  EQ    + +E E
Sbjct: 1   MKVILREDIENLGKSGELVTVKDGFGRNFLLPR--------KKAVLASEQN--LRQLEHE 60

Query: 102 IVKVVTVTKEDKMK-EYEKAAKRLDSTQL-VLRRLIDKEKFRARATKDEPLALQSSVTVD 161
             K V   +  K+K   E+ AK++ + ++ + RR+ D++K            L  SVT  
Sbjct: 61  --KAVIAARNAKLKGAAEEQAKKIGAIKVSIKRRVGDQDK------------LFGSVTAL 120

Query: 162 DLVAEVARQLSVQITPENLHLPSPLSTCGEYEVPLRFPKSI 201
           D+   VA +    I   ++HLP P+   G YEV LR  + +
Sbjct: 121 DIAEAVAAE-GQSIDRRHIHLPEPIKALGNYEVELRLHRDV 136

[Close]

BLAST of MS000507.1 vs. ExPASy TrEMBL
Match: A0A6J1CID3 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011756 PE=3 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK
Sbjct: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. ExPASy TrEMBL
Match: A0A6J1HYV2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467481 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.4e-108
Identity = 203/218 (93.12%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYG+NAL++IIKDTRLH SD+M+QPLLF SQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEE+VKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFR RATKDEPLALQSSVTVDDLVAEVARQLS+QITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           P+PL TCGEYEVPLRFPKSIPLPEGKIYW LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. ExPASy TrEMBL
Match: A0A6J1FZ52 (50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449243 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.5e-108
Identity = 202/218 (92.66%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYG+NAL++IIKDTRLH SD+M+QPLLF SQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPKLLAVPNIDKYAYL+KEQRRIYQPVEEE+VKVVTVTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLVKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLDSTQLVLRRLIDKEKFR RATKDEPLALQSSVTVDDLVAEVARQLS+QITPENLHL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           P+PL TCGEYEVPLRFPKSIPLPEGKIYW LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWSLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. ExPASy TrEMBL
Match: A0A1S3C248 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.1e-103
Identity = 194/218 (88.99%), Postives = 206/218 (94.50%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QYGRNALR+IIKDT LH SDQM+QPLLF  QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGRNALRKIIKDTTLHPSDQMMQPLLFTGQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPK+LAVPNI+KYA+LIKEQRRIYQPVEEE+VKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           AKRLD  QLVLRRLIDKEKFR RATKDEPLALQSSVTVDD+VAEVARQ SVQI PENL+L
Sbjct: 121 AKRLDCKQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
           PSPLS CGEYEV LRFPKSIPLPEGK+YW LKVKVRSK
Sbjct: 181 PSPLSACGEYEVALRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]

BLAST of MS000507.1 vs. ExPASy TrEMBL
Match: A0A0A0LAH8 (50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G238230 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 193/218 (88.53%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60
           MAC+QY RNALR IIKDT+LH SDQM+QPLLF  QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 71  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 130

Query: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120
           KVAPG+FRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEE+VKVVT+TKEDKMKEYEKA
Sbjct: 131 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 190

Query: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180
           A+RLDS QLVLRRLIDKEKFR RA KDEPLALQSSVTVDD+VAEVARQ SVQI PENL+L
Sbjct: 191 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 250

Query: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 219
            SPLS CGEYEVPLRFPKSIPLPEGK+YW LKVKVRSK
Sbjct: 251 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 288

[Close]

BLAST of MS000507.1 vs. TAIR 10
Match: AT5G53070.1 (Ribosomal protein L9/RNase H1 )

HSP 1 Score: 260.0 bits (663), Expect = 1.7e-69
Identity = 139/219 (63.47%), Postives = 173/219 (79.00%), Query Frame = 0


Query: 1   MACVQYGRNALRQII-KDTRLHTSDQMI-QPLLFRSQGVRHRKLEVILTTSIEKLGKAGE 60
           MA V   RN +R ++ + T  H  +  I  PLLF  QGVR+RKLEVILTT IEKLGKAGE
Sbjct: 1   MAYVGQSRNVIRHVVSRGTAYHKYENAIHHPLLFACQGVRYRKLEVILTTGIEKLGKAGE 60

Query: 61  TVKVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVE-EEIVKVVTVTKEDKMKEY 120
           TVKVAPG+FRNHLMPKLLAVPNIDKYAYLI+EQR++Y   E +E VKVV  T E + KEY
Sbjct: 61  TVKVAPGYFRNHLMPKLLAVPNIDKYAYLIREQRKMYNHEEVKEEVKVVHKTSEVQTKEY 120

Query: 121 EKAAKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPEN 180
           EKAAKRL +  LVLR+L+DKEKF+ R++KD+   +Q+ +T +++V+EVARQL V+I P+N
Sbjct: 121 EKAAKRLANANLVLRKLVDKEKFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKIDPDN 180

Query: 181 LHLPSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVR 217
           + L +PL T GEYEVPL+FPK+IPLP+G + WILKVKVR
Sbjct: 181 VVLAAPLETFGEYEVPLKFPKTIPLPQGTVQWILKVKVR 219

The following BLAST results are available for this feature:

BLAST of MS000507.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141339.1	2.1e-114	100.00	uncharacterized protein LOC111011756 [Momordica charantia]	[more]
XP_038895552.1	2.3e-108	93.58	50S ribosomal protein L9 [Benincasa hispida]	[more]
XP_022968164.1	3.0e-108	93.12	uncharacterized protein LOC111467481 [Cucurbita maxima]	[more]
KAG6574247.1	3.9e-108	93.12	hypothetical protein SDJN03_28134, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944820.1	5.1e-108	92.66	uncharacterized protein LOC111449243 [Cucurbita moschata]	[more]

BLAST of MS000507.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2IM65	6.7e-10	31.88	50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=2903...	[more]
B8J801	1.5e-09	31.88	50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC B...	[more]
B4ULB9	1.5e-09	31.88	50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain K) OX=447217 GN=rplI PE...	[more]
A7H6J2	1.9e-09	32.02	50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=r...	[more]
Q1D289	2.8e-08	33.54	50S ribosomal protein L9 OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=rplI...	[more]

BLAST of MS000507.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CID3	1.0e-114	100.00	50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1HYV2	1.4e-108	93.12	50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467...	[more]
A0A6J1FZ52	2.5e-108	92.66	50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3C248	4.1e-103	88.99	50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 ...	[more]
A0A0A0LAH8	1.6e-102	88.53	50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G2382...	[more]

BLAST of MS000507.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53070.1	1.7e-69	63.47	Ribosomal protein L9/RNase H1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020070	Ribosomal protein L9, N-terminal	PFAM	PF01281	Ribosomal_L9_N	coord: 43..79 e-value: 1.1E-12 score: 47.3
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	GENE3D	3.10.430.100		coord: 112..216 e-value: 2.7E-6 score: 29.3
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	SUPERFAMILY	55653	Ribosomal protein L9 C-domain	coord: 111..200
IPR036935	Ribosomal protein L9, N-terminal domain superfamily	GENE3D	3.40.5.10		coord: 42..96 e-value: 1.1E-12 score: 49.2
None	No IPR available	PANTHER	PTHR21368:SF24	BNAA02G10490D PROTEIN	coord: 1..217
IPR000244	Ribosomal protein L9	PANTHER	PTHR21368	50S RIBOSOMAL PROTEIN L9	coord: 1..217
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 42..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS000507	MS000507	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS000507.1-cds	MS000507.1-cds-scaffold44:2144582..2144725	CDS
MS000507.1-cds	MS000507.1-cds-scaffold44:2144821..2144955	CDS
MS000507.1-cds	MS000507.1-cds-scaffold44:2145685..2145792	CDS
MS000507.1-cds	MS000507.1-cds-scaffold44:2146077..2146181	CDS
MS000507.1-cds	MS000507.1-cds-scaffold44:2146812..2146973	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS000507.1	MS000507.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome