MS000434.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS000434.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	conserved peptide upstream open reading frame 14
Location	scaffold44: 1652806 .. 1652961 (-)
Sequence length	156
RNA-Seq Expression	MS000434.1
Synteny	MS000434.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGTGGAAAGGTTGTGGAAAACTAGGACGACTGGCGCCAAGAGGTGGTTCTATGACTTCTTACAAATATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTTAGGAAAATGAGGTACTCCTACAGACCTGAGTGGGTG

mRNA sequence

ATGGGTAAGTGGAAAGGTTGTGGAAAACTAGGACGACTGGCGCCAAGAGGTGGTTCTATGACTTCTTACAAATATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTTAGGAAAATGAGGTACTCCTACAGACCTGAGTGGGTG

Coding sequence (CDS)

ATGGGTAAGTGGAAAGGTTGTGGAAAACTAGGACGACTGGCGCCAAGAGGTGGTTCTATGACTTCTTACAAATATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTTAGGAAAATGAGGTACTCCTACAGACCTGAGTGGGTG

Protein sequence

MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV

Homology

[Close]

BLAST of MS000434.1 vs. NCBI nr
Match: KAG7013257.1 (hypothetical protein SDJN02_26015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.8 bits (281), Expect = 8.6e-22
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MGKWKGCGKLGRL PRGGSMTSYKY+LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 40 MGKWKGCGKLGRLVPRGGSMTSYKYSLLLSPVVSVWDCIVRKMRYSYRPEWV 91

[Close]

BLAST of MS000434.1 vs. NCBI nr
Match: KAA0033697.1 (uncharacterized protein E6C27_scaffold239G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 3.6e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
           M KWKG GKLGRL PRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 50  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 101

[Close]

BLAST of MS000434.1 vs. NCBI nr
Match: XP_008439287.1 (PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo] >XP_016899083.1 PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 3.6e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M KWKG GKLGRL PRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 4  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 55

[Close]

BLAST of MS000434.1 vs. NCBI nr
Match: XP_016650179.1 (PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume] >XP_016650180.1 PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume])

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR+ PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 10 MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 61

[Close]

BLAST of MS000434.1 vs. NCBI nr
Match: KAB2598673.1 (hypothetical protein D8674_001593 [Pyrus ussuriensis x Pyrus communis] >ONI25398.1 hypothetical protein PRUPE_2G300500 [Prunus persica])

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR+ PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 1  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 52

[Close]

BLAST of MS000434.1 vs. ExPASy TrEMBL
Match: A0A1S3AY20 (uncharacterized protein LOC103484116 OS=Cucumis melo OX=3656 GN=LOC103484116 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          M KWKG GKLGRL PRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 4  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 55

[Close]

BLAST of MS000434.1 vs. ExPASy TrEMBL
Match: A0A5A7SWR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001680 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
           M KWKG GKLGRL PRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 50  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 101

[Close]

BLAST of MS000434.1 vs. ExPASy TrEMBL
Match: A0A6J5WRR2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17860 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR+ PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 44 MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 95

[Close]

BLAST of MS000434.1 vs. ExPASy TrEMBL
Match: A0A498KSB3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042840 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR+ PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 4  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 55

[Close]

BLAST of MS000434.1 vs. ExPASy TrEMBL
Match: A0A251QNM1 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G300500 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR+ PRGGS+++Y+++LLLSPVVSVWDCIVRKMRYSYRPEWV
Sbjct: 1  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 52

[Close]

BLAST of MS000434.1 vs. TAIR 10
Match: AT5G52552.1 (conserved peptide upstream open reading frame 14 )

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-15
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MG+ KGC KLGR+  +  S  SY  +LLLSPVVSVWDCIVRKMRY+Y PEWV
Sbjct: 1  MGEVKGCWKLGRMLSKDNSANSYNVSLLLSPVVSVWDCIVRKMRYTYIPEWV 52

[Close]

BLAST of MS000434.1 vs. TAIR 10
Match: AT4G25672.1 (conserved peptide upstream open reading frame 12 )

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-14
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MG+ KGCG +GR+  +  S  SY  +L LSPVVS WDCIVR MRYSY PEWV
Sbjct: 1  MGESKGCGNVGRMISKNKSANSYNLSLQLSPVVSFWDCIVRTMRYSYIPEWV 52

[Close]

BLAST of MS000434.1 vs. TAIR 10
Match: AT4G25692.1 (conserved peptide upstream open reading frame 13 )

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-10
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 1  MGKWKGCGKLGRLAPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 53
          MG+  GCGK G + P   S  SY  +L LS V SVWDC VR MRYSY PEW+
Sbjct: 4  MGESTGCGKGGLMIPNHKSANSYNLSLELSLVDSVWDCNVRTMRYSYIPEWL 55

The following BLAST results are available for this feature:

BLAST of MS000434.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013257.1	8.6e-22	96.15	hypothetical protein SDJN02_26015, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0033697.1	3.6e-20	94.23	uncharacterized protein E6C27_scaffold239G001680 [Cucumis melo var. makuwa]	[more]
XP_008439287.1	3.6e-20	94.23	PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo] >XP_016899083.1 P...	[more]
XP_016650179.1	9.9e-18	82.69	PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume] >XP_016...	[more]
KAB2598673.1	9.9e-18	82.69	hypothetical protein D8674_001593 [Pyrus ussuriensis x Pyrus communis] >ONI25398...	[more]

BLAST of MS000434.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000434.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AY20	1.8e-20	94.23	uncharacterized protein LOC103484116 OS=Cucumis melo OX=3656 GN=LOC103484116 PE=...	[more]
A0A5A7SWR1	1.8e-20	94.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J5WRR2	4.8e-18	82.69	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17860 PE=4 S...	[more]
A0A498KSB3	4.8e-18	82.69	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042840 PE=4 SV=1	[more]
A0A251QNM1	4.8e-18	82.69	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G300500 PE=4 SV=1	[more]

BLAST of MS000434.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52552.1	1.3e-15	69.23	conserved peptide upstream open reading frame 14	[more]
AT4G25672.1	7.1e-14	63.46	conserved peptide upstream open reading frame 12	[more]
AT4G25692.1	3.6e-10	57.69	conserved peptide upstream open reading frame 13	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS000434	MS000434	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS000434.1-cds	MS000434.1-cds-scaffold44:1652806..1652961	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS000434.1	MS000434.1-protein	polypeptide