MS000404.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS000404.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Remorin family protein
Location	scaffold44: 1463644 .. 1464029 (-)
Sequence length	288
RNA-Seq Expression	MS000404.1
Synteny	MS000404.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCAGAGCTGAACGAAAGATAGCTTCCACTGAAGCATGGGAGAGCTCAAAGCAAGTTGCTTCGGGAGTTAAAGTCAAAAAGATTGAGGTTTTTTTCTTCTCTTTCTCCTTTTGTGGGTGTGCTTTAATTTTCATTTTACCATAAGTTTAGAAAACCCTAAAAAAAATTAATTTGGAAAATTAAAGGCTGAATTGGAGAGATTAAAGCTAAAGATGATTGAGAAGGTACGAAACAAAGAGGCAGAATCACATATAGCAGCAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAAGCATCAAAAACAGAAGGTTGAGGAGAAAGCTGCTAAGCATCGCTCTACCAATACAATTCCATCCAAGTGTTTTGGTATTTTCGAAGAC

mRNA sequence

TTGATCAGAGCTGAACGAAAGATAGCTTCCACTGAAGCATGGGAGAGCTCAAAGCAAGTTGCTTCGGGAGTTAAAGTCAAAAAGATTGAGGCTGAATTGGAGAGATTAAAGCTAAAGATGATTGAGAAGGTACGAAACAAAGAGGCAGAATCACATATAGCAGCAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAAGCATCAAAAACAGAAGGTTGAGGAGAAAGCTGCTAAGCATCGCTCTACCAATACAATTCCATCCAAGTGTTTTGGTATTTTCGAAGAC

Coding sequence (CDS)

TTGATCAGAGCTGAACGAAAGATAGCTTCCACTGAAGCATGGGAGAGCTCAAAGCAAGTTGCTTCGGGAGTTAAAGTCAAAAAGATTGAGGCTGAATTGGAGAGATTAAAGCTAAAGATGATTGAGAAGGTACGAAACAAAGAGGCAGAATCACATATAGCAGCAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAAGCATCAAAAACAGAAGGTTGAGGAGAAAGCTGCTAAGCATCGCTCTACCAATACAATTCCATCCAAGTGTTTTGGTATTTTCGAAGAC

Protein sequence

LIRAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANIEVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFED

Homology

[Close]

BLAST of MS000404.1 vs. NCBI nr
Match: KGN57373.1 (hypothetical protein Csa_010046 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-19
Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AER++ASTEAW++SK+ A   +VKKI+A+L +L+L+ +EKV+NKEAE+H A ESKKA+I
Sbjct: 33  KAERRLASTEAWKNSKKAALEAEVKKIDADLVKLRLRGMEKVKNKEAETHKAVESKKASI 92

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFED 97
           E +R+ +K KVE KA  HR TNT+P KCFGI  D
Sbjct: 93  EAKRELKKLKVEGKAKVHRCTNTVPKKCFGICND 126

[Close]

BLAST of MS000404.1 vs. NCBI nr
Match: XP_004140777.2 (remorin [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 9.7e-11
Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AER++ASTEAW++SK+ A   +VKKI+A+L +L+L+ +EKV+NKEAE+H A ESKKA+I
Sbjct: 33  KAERRLASTEAWKNSKKAALEAEVKKIDADLVKLRLRGMEKVKNKEAETHKAVESKKASI 92

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSK 90
           E +R+ +K KVE KA   +S   +P +
Sbjct: 93  EAKRELKKLKVEGKA---KSLKNLPQR 116

[Close]

BLAST of MS000404.1 vs. NCBI nr
Match: KAA0033641.1 (remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 30 EAELERLKLKMIEKVRNKEAESHIAAESKKANIEVERKHQKQKVEEKAAKHRSTNTIPSK 89
          +A+L +L+LK +EKV+NKEAE+H A ESKKA+IE +R+ +K KVE++A  HR TNT+P K
Sbjct: 6  KADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEDRAKMHRCTNTVPKK 65

Query: 90 CFGIFED 97
          CFGI  D
Sbjct: 66 CFGICND 72

[Close]

BLAST of MS000404.1 vs. NCBI nr
Match: XP_022867512.1 (remorin-like [Olea europaea var. sylvestris] >CAA2997354.1 remorin-like [Olea europaea subsp. europaea])

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +A++K++S EAWE+SK+ +   ++KKIE ELE+ K + +EK++NK A  H AAE K+A I
Sbjct: 103 KAQKKLSSIEAWENSKKASLEAELKKIEEELEKKKAEYVEKMKNKVALVHKAAEEKRAII 162

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E +R     K EE AAK+R+T T P K  G F
Sbjct: 163 EAKRGEDLLKAEEMAAKYRATGTAPKKLLGCF 194

[Close]

BLAST of MS000404.1 vs. NCBI nr
Match: TYK22939.1 (remorin [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           RA +K+++  +WE+SK+ A   ++K+IE +LE+ K + IEK++NK A  H  AE KKA I
Sbjct: 51  RAHKKLSAIGSWENSKKAAVEAELKQIEEKLEKKKGEYIEKMKNKIALIHKTAEEKKAVI 110

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFE 96
           E +R  +K K EE AAKHR+T T P K FG F+
Sbjct: 111 EAKRGEEKLKAEEIAAKHRATGTAPKKIFGCFQ 143

[Close]

BLAST of MS000404.1 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AE+K++S  +WE++K+ A   ++KK+E +LE+ K + +E+++NK A+ H  AE K+A I
Sbjct: 111 KAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMI 170

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFG 93
           E +R  +  K EE AAK+R+T T P K FG
Sbjct: 171 EAKRGEEILKAEELAAKYRATGTAPKKLFG 200

[Close]

BLAST of MS000404.1 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AE+KIA   AWE+SK+ A   ++KKIE +LE+ K +  E+++NK A  H  AE ++A I
Sbjct: 121 KAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMI 180

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E +R     K EE AAK+R+T  +P    G F
Sbjct: 181 EAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

[Close]

BLAST of MS000404.1 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +A++K+++  AWE+SK+     ++KK+E +LE+ K +  EK++NK A  H  AE K+A I
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E +R     K EE AAK+R+T T P K  GIF
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

[Close]

BLAST of MS000404.1 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           RA++KI+   AWE+SK+ A   +++KIE +LE+ K +  EK++NK A  H  AE K+A +
Sbjct: 99  RAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMV 158

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E ++  +  K EE  AK+R+T  +P    G F
Sbjct: 159 EAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

[Close]

BLAST of MS000404.1 vs. ExPASy TrEMBL
Match: A0A0A0L6I9 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19
Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AER++ASTEAW++SK+ A   +VKKI+A+L +L+L+ +EKV+NKEAE+H A ESKKA+I
Sbjct: 33  KAERRLASTEAWKNSKKAALEAEVKKIDADLVKLRLRGMEKVKNKEAETHKAVESKKASI 92

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFED 97
           E +R+ +K KVE KA  HR TNT+P KCFGI  D
Sbjct: 93  EAKRELKKLKVEGKAKVHRCTNTVPKKCFGICND 126

[Close]

BLAST of MS000404.1 vs. ExPASy TrEMBL
Match: A0A5D3DHT0 (Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.1e-11
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 30 EAELERLKLKMIEKVRNKEAESHIAAESKKANIEVERKHQKQKVEEKAAKHRSTNTIPSK 89
          +A+L +L+LK +EKV+NKEAE+H A ESKKA+IE +R+ +K KVE++A  HR TNT+P K
Sbjct: 6  KADLAKLRLKEMEKVKNKEAETHKAVESKKASIEAKRELRKLKVEDRAKMHRCTNTVPKK 65

Query: 90 CFGIFED 97
          CFGI  D
Sbjct: 66 CFGICND 72

[Close]

BLAST of MS000404.1 vs. ExPASy TrEMBL
Match: A0A5D3DI57 (Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00170 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           RA +K+++  +WE+SK+ A   ++K+IE +LE+ K + IEK++NK A  H  AE KKA I
Sbjct: 51  RAHKKLSAIGSWENSKKAAVEAELKQIEEKLEKKKGEYIEKMKNKIALIHKTAEEKKAVI 110

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFE 96
           E +R  +K K EE AAKHR+T T P K FG F+
Sbjct: 111 EAKRGEEKLKAEEIAAKHRATGTAPKKIFGCFQ 143

[Close]

BLAST of MS000404.1 vs. ExPASy TrEMBL
Match: A0A5A7SRU5 (Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           RA +K+++  +WE+SK+ A   ++K+IE +LE+ K + IEK++NK A  H  AE KKA I
Sbjct: 109 RAHKKLSAIGSWENSKKAAVEAELKQIEEKLEKKKGEYIEKMKNKIALIHKTAEEKKAVI 168

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFE 96
           E +R  +K K EE AAKHR+T T P K FG F+
Sbjct: 169 EAKRGEEKLKAEEIAAKHRATGTAPKKIFGCFQ 201

[Close]

BLAST of MS000404.1 vs. ExPASy TrEMBL
Match: A0A1S3AXW2 (remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           RA +K+++  +WE+SK+ A   ++K+IE +LE+ K + IEK++NK A  H  AE KKA I
Sbjct: 109 RAHKKLSAIGSWENSKKAAVEAELKQIEEKLEKKKGEYIEKMKNKIALIHKTAEEKKAVI 168

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFE 96
           E +R  +K K EE AAKHR+T T P K FG F+
Sbjct: 169 EAKRGEEKLKAEEIAAKHRATGTAPKKIFGCFQ 201

[Close]

BLAST of MS000404.1 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AE+K++S  +WE++K+ A   ++KK+E +LE+ K + +E+++NK A+ H  AE K+A I
Sbjct: 111 KAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMI 170

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFG 93
           E +R  +  K EE AAK+R+T T P K FG
Sbjct: 171 EAKRGEEILKAEELAAKYRATGTAPKKLFG 200

[Close]

BLAST of MS000404.1 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AE+K++S  +WE++K+ A   ++KK+E +LE+ K + +E+++NK A+ H  AE K+A I
Sbjct: 110 KAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMI 169

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFG 93
           E +R  +  K EE AAK+R+T T P K FG
Sbjct: 170 EAKRGEEILKAEELAAKYRATGTAPKKLFG 199

[Close]

BLAST of MS000404.1 vs. TAIR 10
Match: AT3G48940.1 (Remorin family protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +A++KI+S  AWE+SK+ +   ++KKIE +L + K    E+++NK A+ H  AE K+A  
Sbjct: 84  KAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAMT 143

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E +R     K EE AAK+R+T T P+K FG F
Sbjct: 144 EAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175

[Close]

BLAST of MS000404.1 vs. TAIR 10
Match: AT3G61260.1 (Remorin family protein )

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-12
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           +AE+KIA   AWE+SK+ A   ++KKIE +LE+ K +  E+++NK A  H  AE ++A I
Sbjct: 121 KAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMI 180

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E +R     K EE AAK+R+T  +P    G F
Sbjct: 181 EAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

[Close]

BLAST of MS000404.1 vs. TAIR 10
Match: AT2G45820.1 (Remorin family protein )

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-11
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 3   RAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANI 62
           RA++KI+   AWE+SK+ A   +++KIE +LE+ K +  EK++NK A  H  AE K+A +
Sbjct: 99  RAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMV 158

Query: 63  EVERKHQKQKVEEKAAKHRSTNTIPSKCFGIF 95
           E ++  +  K EE  AK+R+T  +P    G F
Sbjct: 159 EAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

The following BLAST results are available for this feature:

BLAST of MS000404.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57373.1	9.7e-19	59.57	hypothetical protein Csa_010046 [Cucumis sativus]	[more]
XP_004140777.2	9.7e-11	52.87	remorin [Cucumis sativus]	[more]
KAA0033641.1	1.3e-10	59.70	remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo v...	[more]
XP_022867512.1	2.2e-10	47.83	remorin-like [Olea europaea var. sylvestris] >CAA2997354.1 remorin-like [Olea eu...	[more]
TYK22939.1	2.2e-10	48.39	remorin [Cucumis melo var. makuwa]	[more]

BLAST of MS000404.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA5	2.0e-11	43.33	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
Q9M2D8	1.0e-10	43.48	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]
P93788	1.3e-10	43.48	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
O80837	1.1e-09	40.22	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1	[more]

BLAST of MS000404.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I9	4.7e-19	59.57	Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 P...	[more]
A0A5D3DHT0	6.1e-11	59.70	Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 P...	[more]
A0A5D3DI57	1.0e-10	48.39	Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00170 PE=3 S...	[more]
A0A5A7SRU5	1.0e-10	48.39	Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 S...	[more]
A0A1S3AXW2	1.0e-10	48.39	remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1	[more]

BLAST of MS000404.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23750.1	1.4e-12	43.33	Remorin family protein	[more]
AT5G23750.2	1.4e-12	43.33	Remorin family protein	[more]
AT3G48940.1	3.2e-12	43.48	Remorin family protein	[more]
AT3G61260.1	7.2e-12	43.48	Remorin family protein	[more]
AT2G45820.1	7.9e-11	40.22	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..50
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 3..94
None	No IPR available	PANTHER	PTHR31775:SF31	CARBOXY-TERMINAL REGION REMORIN	coord: 3..94
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 3..89 e-value: 9.2E-13 score: 48.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS000404	MS000404	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS000404.1-cds	MS000404.1-cds-scaffold44:1463644..1463841	CDS
MS000404.1-cds	MS000404.1-cds-scaffold44:1463940..1464029	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS000404.1	MS000404.1-protein	polypeptide