MELO3C035287.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C035287.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein PSY3
Locationchr12: 695976 .. 696610 (+)
Sequence length548
RNA-Seq ExpressionMELO3C035287.1
SyntenyMELO3C035287.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTTTATTCTTTTCTCTCTGCGTAAATATATTTACCAATATATATATATATATATATTGATTTCTTTACTTCCTAATCTCCATTACCAATCATTCAAACAAAGAAAAAACAGCAATAAATATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGGTACGGAAAATATGCTAATTTATAACCTATTATTGAGTAGTTTAGATTTACATAATGTATAGAAACTAAAATCTAATATCATATCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAAAGAAAATTTTACTCATTAGAGGAGGAAGAAAGCATCGGCAAGGAAGCTTGAAAAGAGAAATAATGTTGTGGATGAGCCAATAATAATACTATATATATAATCGATAATTTATATAATAATTCCCTTTATATGCTTTGAGAATGGAGTAATATGCATTATCAAATTAATGTAATAAATGCTGAAAAATAGCATGGTGTAATGAAC

mRNA sequence

ATAGTTTATTCTTTTCTCTCTGCGTAAATATATTTACCAATATATATATATATATATATTGATTTCTTTACTTCCTAATCTCCATTACCAATCATTCAAACAAAGAAAAAACAGCAATAAATATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAAAGAAAATTTTACTCATTAGAGGAGGAAGAAAGCATCGGCAAGGAAGCTTGAAAAGAGAAATAATGTTGTGGATGAGCCAATAATAATACTATATATATAATCGATAATTTATATAATAATTCCCTTTATATGCTTTGAGAATGGAGTAATATGCATTATCAAATTAATGTAATAAATGCTGAAAAATAGCATGGTGTAATGAAC

Coding sequence (CDS)

ATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAA

Protein sequence

MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFEVSVVKVQHIRKNP
Homology
BLAST of MELO3C035287.1 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 6.9e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VSVVKVQHIRKNP 74
          VSVVKVQHIRKNP
Sbjct: 61 VSVVKVQHIRKNP 73

BLAST of MELO3C035287.1 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 9.0e-25
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK RLAL LLLSF +VT ARIIPHSENQE AY INDYPDPGANPRHDPFPPP QQFE
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFE 60

Query: 61 VSVVKVQHIRKN 73
          VSVVK   I+KN
Sbjct: 61 VSVVKGHRIKKN 72

BLAST of MELO3C035287.1 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MDYSKTRL-ALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQF 60
          M+Y K RL AL LLLSFA+VT ARI+PHSENQE AY INDYPDPGANPRHDPFPPPPQQF
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I+KNP
Sbjct: 61 EISVVKDHDIKKNP 74

BLAST of MELO3C035287.1 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVSVVKVQHIRKNP 74
          EV+ V+ +HI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

BLAST of MELO3C035287.1 vs. NCBI nr
Match: TYJ97296.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK RLAL LLLSF +V  ARIIP+SEN E AY INDYPDPGANPRH P PPP +Q +
Sbjct: 1  MDYSKARLALFLLLSFVLVASARIIPYSENHEAAYMINDYPDPGANPRHRP-PPPSRQSK 60

Query: 61 VSVVKVQHIRKNP 74
          VS+ K  HI K+P
Sbjct: 61 VSIDKGSHIGKSP 72

BLAST of MELO3C035287.1 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.3e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VSVVKVQHIRKNP 74
          VSVVKVQHIRKNP
Sbjct: 61 VSVVKVQHIRKNP 73

BLAST of MELO3C035287.1 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK RLAL LLLSF +VT ARIIPHSENQE AY INDYPDPGANPRHDPFPPP QQFE
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFE 60

Query: 61 VSVVKVQHIRKN 73
          VSVVK   I+KN
Sbjct: 61 VSVVKGHRIKKN 72

BLAST of MELO3C035287.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.3e-24
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MDYSKTRL-ALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQF 60
          M+Y K RL AL LLLSFA+VT ARI+PHSENQE AY INDYPDPGANPRHDPFPPPPQQF
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I+KNP
Sbjct: 61 EISVVKDHDIKKNP 74

BLAST of MELO3C035287.1 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ-F 60
          MDYSK RL+LLLLLSF +VT ARIIPHSENQEVAY INDYPDPGANPRH+PFPPPP+  F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I KNP
Sbjct: 61 EISVVKDGDITKNP 74

BLAST of MELO3C035287.1 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVSVVKVQHIRKNP 74
          EV+ V+ +HI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0031837.16.9e-33100.00hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730... [more]
KAA0031836.19.0e-2583.33Protein PSY3 [Cucumis melo var. makuwa][more]
KAA0031838.11.3e-2379.73hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa][more]
KGN65816.11.0e-2072.97hypothetical protein Csa_023196 [Cucumis sativus][more]
TYJ97296.11.4e-1769.86Protein PSY3 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3BBU73.3e-33100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SPC64.3e-2583.33Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P... [more]
A0A5A7SMH76.3e-2479.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LV671.8e-2379.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1[more]
A0A0A0M0T85.0e-2172.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035287MELO3C035287gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035287.1:exon:340059MELO3C035287.1:exon:340059exon
MELO3C035287.1:exon:340060MELO3C035287.1:exon:340060exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035287.1:five_prime_utrMELO3C035287.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035287.1:cdsMELO3C035287.1:cdsCDS
MELO3C035287.1:cdsMELO3C035287.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035287.1:three_prime_utrMELO3C035287.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035287.1MELO3C035287.1-proteinpolypeptide