MELO3C035234.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C035234.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Agglutinin domain-containing protein
Location	chr11: 29784199 .. 29785678 (+)
Sequence length	351
RNA-Seq Expression	MELO3C035234.1
Synteny	MELO3C035234.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTATGTCCCTCAGTATGACCAAGAAGATCGTGTCATTCTATGAAGGTGAGAAGAAGGAATACTGATTTTTTTAATAGCGTGAAAAGACGTTTCAAAAAAATAAAGTTTTCATGATCGGAACATTAATGCAAAAACGGTTTTCCACGTACTAAAATCTTGCTGAAAAAACATTAACTTATAAGTTAATGTTTTGCTAAAATTATTTACAATTATATGGGAATTTTAGTTTCTATAACATATAAACTGTGATACTATAAAAGAATTATTATACCCACGTTGCCTAACTCAATAGAACACAACATCATCATCGTCCCTAACATTGTCACTAACGATTATCATTTTTATTCTCTCTCTCTCTCTTTTTTTTTTTTTTAAGAAAAGTATAATTTTTTCGTTGCATATAAAAAGGCTTTAGGTTCATCGAGGGTTTTAAACGTAACATAGAGAAAAGAGTTTGGAGACGCATTAACATTATACACACAATACAAAATGTTTCCATTACCCCCGCCTAAAGGTGCTCCGGCGCCGGAGACGCCCAAGAAAGAAGCAATAAAAAGCTACAAACTTGACTTGTCGTCCTCCTCCGACGACAGATCCATAATCCCAAAATATTTTGCTTTGCAAAACTATAGTCCAAGACATCCCCAGCCAATAACTGCACCATTTCTACAGAATATACATGGAAGTGGATACCTTGAATTCAATAGCGAACACGGCCTCCTCAGTCCAATTTCAAAATTCGAATCCGAGATCTCTGATTCCGATTCCAAACTCATCCACATTAGATGTACGAACAACAACAGATATTGGGTTCGCAAATCATCCGACTCCAACCACATTGTACCCACTGCCACAAAGAAAGAAGACGACCGATCGAAATGGTCGTGCACTTTGTTTGAGCCAATCTGCGATGCCAAATATAAAGCTTATCGCTTTCGGCACGTGCAGCTCGGTTACGAGTTGTTTCGAGATAAAACAAACCGGTTATCGGCAATAGAGAATGGTAGACCAGATTCTGAACGGGAGGATGCATATGGTGTATTCACCAAAGTTATTGATTGGAATTCGTTATGTGTGTTCCCAAAACATGTGACCTTTAAAGGCTTCAATGGCAGGTACTTGAGATTTGAGGGTAAGTATTTGCAAGTATCTGGAGTGGACAATCATCCATCTCTTATCCATGAGATCTTCCCTCAGAAGGATGGAAATCTTCATCTCAAGAATGTTGAATCCAGAAGGTTCTGGATCTATGATCCTAATTGGATAGTCGCTACCGCACGAGGTATGAATCTCGTACTTAACTCGAGAGGCAAAAGCACAATCTTTTTTGTATTTTGTTTTTAGTTTTTTCAAAACTAAATATATAAACACTTATTTCATCTCTAAATTTCTTTCTCATCATCCATCAAGACCAAACATGTTTTTAAAAATTTTAAAATTTTAAAATTTTGTTTTATAGTAAAAGTTGATTAA

mRNA sequence

ATGTCTGCTATGTCCCTCAGTATGACCAAGAAGATCGTGTCATTCTATGAAGAGAATGGTAGACCAGATTCTGAACGGGAGGATGCATATGGTGTATTCACCAAAGTTATTGATTGGAATTCGTTATGTGTGTTCCCAAAACATGTGACCTTTAAAGGCTTCAATGGCAGGTACTTGAGATTTGAGGGTAAGTATTTGCAAGTATCTGGAGTGGACAATCATCCATCTCTTATCCATGAGATCTTCCCTCAGAAGGATGGAAATCTTCATCTCAAGAATGTTGAATCCAGAAGGTTCTGGATCTATGATCCTAATTGGATAGTCGCTACCGCACGAGTAAAAGTTGATTAA

Coding sequence (CDS)

ATGTCTGCTATGTCCCTCAGTATGACCAAGAAGATCGTGTCATTCTATGAAGAGAATGGTAGACCAGATTCTGAACGGGAGGATGCATATGGTGTATTCACCAAAGTTATTGATTGGAATTCGTTATGTGTGTTCCCAAAACATGTGACCTTTAAAGGCTTCAATGGCAGGTACTTGAGATTTGAGGGTAAGTATTTGCAAGTATCTGGAGTGGACAATCATCCATCTCTTATCCATGAGATCTTCCCTCAGAAGGATGGAAATCTTCATCTCAAGAATGTTGAATCCAGAAGGTTCTGGATCTATGATCCTAATTGGATAGTCGCTACCGCACGAGTAAAAGTTGATTAA

Protein sequence

MSAMSLSMTKKIVSFYEENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSLIHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATARVKVD

Homology

[Close]

BLAST of MELO3C035234.1 vs. NCBI nr
Match: KAA0039763.1 (uncharacterized protein E6C27_scaffold122G00260 [Cucumis melo var. makuwa] >TYK24733.1 uncharacterized protein E5676_scaffold266G002940 [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL
Sbjct: 170 ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 229

Query: 78  IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR 113
           IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR
Sbjct: 230 IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR 264

[Close]

BLAST of MELO3C035234.1 vs. NCBI nr
Match: XP_004140503.3 (uncharacterized protein LOC101208220 [Cucumis sativus] >KAE8646785.1 hypothetical protein Csa_005481 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 6.2e-44
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           ENG PDSEREDAYGVFT+VIDWNSLCVFPKHVTFKG+NG+YLRFEGKYLQVSG  NH SL
Sbjct: 167 ENGSPDSEREDAYGVFTRVIDWNSLCVFPKHVTFKGYNGKYLRFEGKYLQVSGEQNHSSL 226

Query: 78  IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR 113
           IHEI+PQKDGNL +KN++S RFWI+DPNWIVATAR
Sbjct: 227 IHEIYPQKDGNLMIKNIKSERFWIHDPNWIVATAR 261

[Close]

BLAST of MELO3C035234.1 vs. NCBI nr
Match: XP_004140504.1 (uncharacterized protein LOC101208463 [Cucumis sativus] >KGN46531.1 hypothetical protein Csa_004887 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           E G+PDSEREDAYGVFTKVIDWNSLCVFPK VT KGFNGRYLR+EGKYLQV+GV+NHPSL
Sbjct: 169 ETGKPDSEREDAYGVFTKVIDWNSLCVFPKRVTLKGFNGRYLRYEGKYLQVTGVNNHPSL 228

Query: 78  IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATA 112
           IHEI+PQKDGNL +KN++S RFWIYDP+WIVATA
Sbjct: 229 IHEIYPQKDGNLKIKNLDSGRFWIYDPDWIVATA 262

[Close]

BLAST of MELO3C035234.1 vs. NCBI nr
Match: KAA0039761.1 (uncharacterized protein E6C27_scaffold122G00240 [Cucumis melo var. makuwa] >TYK24735.1 uncharacterized protein E5676_scaffold266G002960 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-32
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSG  NHPS 
Sbjct: 170 ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGEKNHPSF 229

Query: 78  IHEIFPQKD 87
           IHEIFPQKD
Sbjct: 230 IHEIFPQKD 238

[Close]

BLAST of MELO3C035234.1 vs. NCBI nr
Match: XP_038906851.1 (uncharacterized protein LOC120092742 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 8.1e-28
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 26  REDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVD-NHPSLIHEIFPQ 85
           RED  GVFT VIDW+SL +FPKHVTFKG+NG+YL+F G +LQ SG D  HPSLIHEIFPQ
Sbjct: 186 RED--GVFTTVIDWSSLFIFPKHVTFKGYNGKYLKFFGNFLQFSGTDLEHPSLIHEIFPQ 245

Query: 86  KDGNLHLKNVESRRFWIYDPNWIVATA 112
            DG + +KNV SR+FWI D NWI+ATA
Sbjct: 246 NDGTVRIKNVGSRKFWIRDTNWILATA 270

[Close]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL
Match: A0A5D3DM66 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002940 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.7e-52
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL
Sbjct: 170 ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 229

Query: 78  IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR 113
           IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR
Sbjct: 230 IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR 264

[Close]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL
Match: A0A0A0KAP4 (Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G107830 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           ENG PDSEREDAYGVFTKVIDWNSLCVFPKHVTFKG+NG+YLRFEGKYLQVSG  NH SL
Sbjct: 167 ENGSPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGYNGKYLRFEGKYLQVSGEQNHSSL 226

Query: 78  IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATAR 113
           IHEI+PQKDGNL +KN++S RFWI+DPNWIVATAR
Sbjct: 227 IHEIYPQKDGNLMIKNIKSERFWIHDPNWIVATAR 261

[Close]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL
Match: A0A0A0KFN1 (Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G107320 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           E G+PDSEREDAYGVFTKVIDWNSLCVFPK VT KGFNGRYLR+EGKYLQV+GV+NHPSL
Sbjct: 169 ETGKPDSEREDAYGVFTKVIDWNSLCVFPKRVTLKGFNGRYLRYEGKYLQVTGVNNHPSL 228

Query: 78  IHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATA 112
           IHEI+PQKDGNL +KN++S RFWIYDP+WIVATA
Sbjct: 229 IHEIYPQKDGNLKIKNLDSGRFWIYDPDWIVATA 262

[Close]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL
Match: A0A5D3DM92 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002960 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.0e-32
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 18  ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVDNHPSL 77
           ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSG  NHPS 
Sbjct: 170 ENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGEKNHPSF 229

Query: 78  IHEIFPQKD 87
           IHEIFPQKD
Sbjct: 230 IHEIFPQKD 238

[Close]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL
Match: A0A6J1DQ71 (uncharacterized protein LOC111022557 OS=Momordica charantia OX=3673 GN=LOC111022557 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-23
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 17  EENGRPDSEREDAYGVFTKVIDWNSLCVFPKHVTFKGFNGRYLRFEGKYLQVSGVD-NHP 76
           +E G    E ED    F  +IDW+SL + PKHVTFKG NG+YL++ G YLQ SG D  +P
Sbjct: 179 KEKGATIEEWED--NAFNTLIDWDSLVILPKHVTFKGSNGKYLKYNGHYLQFSGTDVENP 238

Query: 77  SLIHEIFPQKDGNLHLKNVESRRFWIYDPNWIVATA 112
           S IHEIFP+ DG + +KNV  ++FWI DPNWIV  A
Sbjct: 239 SHIHEIFPKNDGTIRIKNVGCQKFWIRDPNWIVVVA 272

The following BLAST results are available for this feature:

BLAST of MELO3C035234.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035234.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039763.1	1.8e-51	100.00	uncharacterized protein E6C27_scaffold122G00260 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_004140503.3	6.2e-44	85.26	uncharacterized protein LOC101208220 [Cucumis sativus] >KAE8646785.1 hypothetica...	[more]
XP_004140504.1	3.1e-43	85.11	uncharacterized protein LOC101208463 [Cucumis sativus] >KGN46531.1 hypothetical ...	[more]
KAA0039761.1	4.1e-32	95.65	uncharacterized protein E6C27_scaffold122G00240 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_038906851.1	8.1e-28	70.11	uncharacterized protein LOC120092742 [Benincasa hispida]	[more]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM66	8.7e-52	100.00	Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KAP4	1.3e-44	86.32	Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G107830 ...	[more]
A0A0A0KFN1	1.5e-43	85.11	Agglutinin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G107320 ...	[more]
A0A5D3DM92	2.0e-32	95.65	Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DQ71	6.5e-23	55.21	uncharacterized protein LOC111022557 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MELO3C035234.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.80.10.50		coord: 45..116 e-value: 2.6E-13 score: 52.1
None	No IPR available	PANTHER	PTHR39244	NATTERIN-4	coord: 23..111
None	No IPR available	PANTHER	PTHR39244:SF5	NATTERIN-4	coord: 23..111
IPR036242	Agglutinin domain superfamily	SUPERFAMILY	50382	Agglutinin	coord: 39..111

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035234	MELO3C035234	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035234.1:exon:337646	MELO3C035234.1:exon:337646	exon
MELO3C035234.1:exon:337647	MELO3C035234.1:exon:337647	exon
MELO3C035234.1:exon:337648	MELO3C035234.1:exon:337648	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035234.1:cds	MELO3C035234.1:cds	CDS
MELO3C035234.1:cds	MELO3C035234.1:cds_2	CDS
MELO3C035234.1:cds	MELO3C035234.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035234.1	MELO3C035234.1-protein	polypeptide