MELO3C034950.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C034950.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr11: 10669714 .. 10670744 (-)
Sequence length309
RNA-Seq ExpressionMELO3C034950.1
SyntenyMELO3C034950.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGGAATATGCAGAGACGTTCACCGTGAAAGGGGGAGGTATACATATGTTTATGGAAACTTCACAAAATCCAGCGAAATAAACATCTACTTTTCAAAAATGCTCCCAATCGTTCACGTCTTCAATTTCGAGCAAACATTAGTCGTTCATCGTCTTTAATTTCGAGCAAACATTAGGGTTTACCTTCGTCGTCTCCAACAGGACCTTTGCTCCACGCCAGTTGAAAGAAAATCACTACGTCGTGAAGCCATTTTTCATTATGGTTAGTCTATTTTTAAACTTCGTATATCAAATAGAATGGATATATTTGCTGGGATCATATTTCTTTTCAGTCTGGAACCGTCTTTTTCCTAGTATTTTATTAGAAAATGAGATTGAAGAAGCATTTAGGGTTTTTTAACAATATTGATTTCTACTGTGAAATTGATAGATGTAAAATGTTATTTTACTCTTATAACAAAAATGAAGTAATGCATGTTGTATATATTTTGTTTTGAACTTTTTAATCTTAAAATGCTACTTTGAAAAGTGGATGTTGTTTCTATAAAAATCATAATATGGTAAATGGTAGTTTATATTGTATATTAATCTCTATATGTAGTTAAAAAAATTGTGTAGAAGCAAGAGATGCCTAGAATAAAGGATGAAACATATGAAATCGAACAAGGATGATTCAATAATGATTGACGAGACAGAGATATATTTTAAAGTTTCTGAAGTTATATTTGAAATGGTATAAATTGTTAAACAAGATATAATATGTATATATATATCGTAGGATGAAGAAAGATATGAAGAAGCAATTAACTACGAACCATTGCAAATTGTATATCTAGACGATGATGAACAAGAATAAAGAGGAGCTATAGGTACATACAGATTGTGCTGTACTAGGAGAAGAAATATGTGAAACCGGATTTGGTATTTGAAATACCAGAGGCAAAGATGCCAATGCATGACCGAGGTGAACAACCAAAACCAGGTCTAAGAGGAATCATTCTTAGAATCGACCACACAAAAGGCTAG

mRNA sequence

ATGAAAAAGGAATATGCAGAGACGTTCACCGTGAAAGGGGGAGGGTTTACCTTCGTCGTCTCCAACAGGACCTTTGCTCCACGCCAGTTGAAAGAAAATCACTACGTCGTGAAGCCATTTTTCATTATGGATGAAGAAAGATATGAAGAAGCAATTAACTACGAACCATTGCAAATTGAGAAGAAATATGTGAAACCGGATTTGGTATTTGAAATACCAGAGGCAAAGATGCCAATGCATGACCGAGGTGAACAACCAAAACCAGGTCTAAGAGGAATCATTCTTAGAATCGACCACACAAAAGGCTAG

Coding sequence (CDS)

ATGAAAAAGGAATATGCAGAGACGTTCACCGTGAAAGGGGGAGGGTTTACCTTCGTCGTCTCCAACAGGACCTTTGCTCCACGCCAGTTGAAAGAAAATCACTACGTCGTGAAGCCATTTTTCATTATGGATGAAGAAAGATATGAAGAAGCAATTAACTACGAACCATTGCAAATTGAGAAGAAATATGTGAAACCGGATTTGGTATTTGAAATACCAGAGGCAAAGATGCCAATGCATGACCGAGGTGAACAACCAAAACCAGGTCTAAGAGGAATCATTCTTAGAATCGACCACACAAAAGGCTAG

Protein sequence

MKKEYAETFTVKGGGFTFVVSNRTFAPRQLKENHYVVKPFFIMDEERYEEAINYEPLQIEKKYVKPDLVFEIPEAKMPMHDRGEQPKPGLRGIILRIDHTKG
Homology
[Close]
BLAST of MELO3C034950.1 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 36/64 (56.25%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 44  DEERYEEAINYEPLQI----------------------EKKYVKPDLVFEIPEAKMPMHD 86
           DEERYEEAINYEPLQ                       EKKYVKPD+VFE PE KMP HD
Sbjct: 145 DEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPTHD 204

[Close]
BLAST of MELO3C034950.1 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.7e-08
Identity = 36/64 (56.25%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 44  DEERYEEAINYEPLQI----------------------EKKYVKPDLVFEIPEAKMPMHD 86
           DEERYEEAINYEPLQ                       EKKYVKPD+VFE PE KMP HD
Sbjct: 145 DEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMPTHD 204

The following BLAST results are available for this feature:
BLAST of MELO3C034950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK30853.11.4e-0756.25retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C034950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034950.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E4066.7e-0856.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C034950.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C034950MELO3C034950gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034950.1:exon:317967MELO3C034950.1:exon:317967exon
MELO3C034950.1:exon:317966MELO3C034950.1:exon:317966exon
MELO3C034950.1:exon:317965MELO3C034950.1:exon:317965exon
MELO3C034950.1:exon:317964MELO3C034950.1:exon:317964exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034950.1:cdsMELO3C034950.1:cdsCDS
MELO3C034950.1:cdsMELO3C034950.1:cds_2CDS
MELO3C034950.1:cdsMELO3C034950.1:cds_3CDS
MELO3C034950.1:cdsMELO3C034950.1:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C034950.1MELO3C034950.1-proteinpolypeptide