MELO3C034588.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C034588.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPlant transposase
Locationchr11: 4486892 .. 4487117 (+)
Sequence length200
RNA-Seq ExpressionMELO3C034588.1
SyntenyMELO3C034588.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCCGTCGCTCGCCGCCGTCCTCCACTCTATCTTTCCGATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCGATCGTGCGTCGACCGTCGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGCGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGACGGTGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGTGTGGAGAAGATG

mRNA sequence

AATCCCGTCGCTCGCCGCCGTCCTCCACTCTATCTTTCCGATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCGATCGTGCGTCGACCGTCGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGAGAAGAAGATGGTGGAGGACGGTGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGTGTGGAGAAGATG

Coding sequence (CDS)

AATCCCGTCGCTCGCCGCCGTCCTCCACTCTATCTTTCCGATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCGATCGTGCGTCGACCGTCGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGAGAAGAAGATGGTGGAGGACGGTGAATGGAGAGGGATGAGAAGAAGATGGTGGAGGATGGTGTGGAGAAGA

Protein sequence

NPVARRRPPLYLSDFSSPQSPPSSTRSCVDRRGKMERDEKKMEKKMVEDGEWRGMRRRWWRMVWRR
Homology
[Close]
BLAST of MELO3C034588.1 vs. NCBI nr
Match: KAA0058315.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 2   PVARRRPPLYLSDFSSPQSPPSSTRSCVDRRGKMERDE-------KKMEKKMVEDG 51
           PVARRRP  YL DFSSPQS PSS  SC DR GKMER+E       ++ EKKMVEDG
Sbjct: 172 PVARRRPLPYLFDFSSPQSLPSSILSCADRCGKMEREEDGGRRRMERDEKKMVEDG 227

[Close]
BLAST of MELO3C034588.1 vs. ExPASy TrEMBL
Match: A0A5A7UXH0 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006500 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 2   PVARRRPPLYLSDFSSPQSPPSSTRSCVDRRGKMERDE-------KKMEKKMVEDG 51
           PVARRRP  YL DFSSPQS PSS  SC DR GKMER+E       ++ EKKMVEDG
Sbjct: 172 PVARRRPLPYLFDFSSPQSLPSSILSCADRCGKMEREEDGGRRRMERDEKKMVEDG 227

The following BLAST results are available for this feature:
BLAST of MELO3C034588.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058315.12.2e-0666.07Plant transposase [Cucumis melo var. makuwa][more]
BLAST of MELO3C034588.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034588.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UXH01.1e-0666.07Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00... [more]
BLAST of MELO3C034588.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..27

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C034588MELO3C034588gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034588.1:exon:311176MELO3C034588.1:exon:311176exon
MELO3C034588.1:exon:311175MELO3C034588.1:exon:311175exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034588.1:cdsMELO3C034588.1:cdsCDS
MELO3C034588.1:cdsMELO3C034588.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C034588.1:three_prime_utrMELO3C034588.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C034588.1MELO3C034588.1-proteinpolypeptide