MELO3C034387.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C034387.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DUF1985 domain-containing protein
Location	chr10: 13805306 .. 13805677 (+)
Sequence length	372
RNA-Seq Expression	MELO3C034387.1
Synteny	MELO3C034387.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGACTAAAACGTCACAAATTCCTAGAGTTAAATCTAGGAGAAAGAAAAGAAAATGATCTGAAAAATGTCCTTTTTCGTCATGACGACTTTATAACAAGAAGAGATATAGAAAGAACTTTCAAAGTGTTACGCAACGAGGAAGACCTATTGAAAGAAAAACTAGTTAACCTCTATATTTTAGAAGCATTTTTTATTCCCAAGCAACAACACAACCACATAAATCTCCAACATCTAGACATATTGGATCATGAAGAAACCTTTAAAGATTATCCATGGGGAAAGTTATCATACATCCTAACATATCAATTCTTGAAAAAAGTATCATACAGTGACAAGGATGCTGATACCTTCAAGGATTTCCCTTAG

mRNA sequence

ATGACTGGACTAAAACGTCACAAATTCCTAGAGTTAAATCTAGGAGAAAGAAAAGAAAATGATCTGAAAAATGTCCTTTTTCGTCATGACGACTTTATAACAAGAAGAGATATAGAAAGAACTTTCAAAGTGTTACGCAACGAGGAAGACCTATTGAAAGAAAAACTAGTTAACCTCTATATTTTAGAAGCATTTTTTATTCCCAAGCAACAACACAACCACATAAATCTCCAACATCTAGACATATTGGATCATGAAGAAACCTTTAAAGATTATCCATGGGGAAAGTTATCATACATCCTAACATATCAATTCTTGAAAAAAGTATCATACAGTGACAAGGATGCTGATACCTTCAAGGATTTCCCTTAG

Coding sequence (CDS)

ATGACTGGACTAAAACGTCACAAATTCCTAGAGTTAAATCTAGGAGAAAGAAAAGAAAATGATCTGAAAAATGTCCTTTTTCGTCATGACGACTTTATAACAAGAAGAGATATAGAAAGAACTTTCAAAGTGTTACGCAACGAGGAAGACCTATTGAAAGAAAAACTAGTTAACCTCTATATTTTAGAAGCATTTTTTATTCCCAAGCAACAACACAACCACATAAATCTCCAACATCTAGACATATTGGATCATGAAGAAACCTTTAAAGATTATCCATGGGGAAAGTTATCATACATCCTAACATATCAATTCTTGAAAAAAGTATCATACAGTGACAAGGATGCTGATACCTTCAAGGATTTCCCTTAG

Protein sequence

MTGLKRHKFLELNLGERKENDLKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNLYILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTFKDFP

Homology

[Close]

BLAST of MELO3C034387.1 vs. NCBI nr
Match: KAA0038287.1 (DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 60  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTF 119
           ++ +A +  K QHNHINL HLDIL++EE FK YPWG+LSYILTYQFLKK SY+DKD    
Sbjct: 223 FLKKASYNDKLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYL 282

Query: 120 KDFP 124
           + FP
Sbjct: 283 QGFP 286

[Close]

BLAST of MELO3C034387.1 vs. NCBI nr
Match: KAA0035989.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKEND-LKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNL 60
           +TGLK H+  ++N  + K    LK V F++   +TR+ +   F V   E D  + K+  L
Sbjct: 29  ITGLKCHEIPDINHKDIKGGGRLKGVYFKNLKTMTRQYLNIMFNVSTAETDDDRIKMAKL 88

Query: 61  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKV 110
           Y LE+F IPKQ+   +   H+ ++D +E F  YPWG++++ L   F+ +V
Sbjct: 89  YFLESFLIPKQECLSVEWDHITMVDDDEVFDGYPWGRVAFELLVNFMNRV 138

[Close]

BLAST of MELO3C034387.1 vs. NCBI nr
Match: KAA0067175.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKEND-LKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNL 60
           +TGL+ H+  ++N  + K    LK V F +   + R+ +   F +     D  + K+  L
Sbjct: 153 ITGLRCHEIPDINHEDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTAGTDDDRIKMAKL 212

Query: 61  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTF 120
           Y LE+F IPKQ+   ++  H+ ++D +E F  YPWG++++ L   F+ KV YS K    F
Sbjct: 213 YFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVTFELLVDFMNKVVYS-KGQTVF 272

Query: 121 KDF 123
             F
Sbjct: 273 SSF 274

[Close]

BLAST of MELO3C034387.1 vs. NCBI nr
Match: KAA0033298.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-07
Identity = 35/110 (31.82%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKEND-LKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNL 60
           +TGL+ H+  ++N  + K    LK V F +   +TR+ +   F +   E D  + K+  L
Sbjct: 11  ITGLRCHEIPDINHEDIKSGGRLKGVYFENLKTVTRQYLNVMFNISTAETDDDRIKMAKL 70

Query: 61  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKV 110
           Y LE+F IPKQ+   ++  H+ +++  E F  YPWG++++ L   F+ +V
Sbjct: 71  YFLESFLIPKQECLSVDWDHIIMVEDNEVFDGYPWGRVAFELLVDFMNRV 120

[Close]

BLAST of MELO3C034387.1 vs. NCBI nr
Match: XP_024031030.1 (uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031032.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031033.1 uncharacterized protein LOC21394043 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-07
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKENDLKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNLY 60
           +TGL    +  +   +  E+  K   FR    + R  +   F+  R   D    KL  LY
Sbjct: 179 ITGLNCSNYPFIFEKQLPESTTKRKFFRKGKSVQRIKLNDVFRANRGGTDEDIVKLAKLY 238

Query: 61  ILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTF 120
            LE+  IPK+  N+I+  HL ++D+ E F +YPWG+LSY +T  ++K+ S   ++A+ +
Sbjct: 239 CLESLLIPKKIENNIDPNHLKMVDNPELFDNYPWGRLSYEMTIAYIKR-SIKSQEAEAY 296

[Close]

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL
Match: A0A5A7T9I0 (DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001480 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.9e-15
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 60  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTF 119
           ++ +A +  K QHNHINL HLDIL++EE FK YPWG+LSYILTYQFLKK SY+DKD    
Sbjct: 223 FLKKASYNDKLQHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYL 282

Query: 120 KDFP 124
           + FP
Sbjct: 283 QGFP 286

[Close]

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL
Match: A0A5A7T3K3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002030 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKEND-LKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNL 60
           +TGLK H+  ++N  + K    LK V F++   +TR+ +   F V   E D  + K+  L
Sbjct: 29  ITGLKCHEIPDINHKDIKGGGRLKGVYFKNLKTMTRQYLNIMFNVSTAETDDDRIKMAKL 88

Query: 61  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKV 110
           Y LE+F IPKQ+   +   H+ ++D +E F  YPWG++++ L   F+ +V
Sbjct: 89  YFLESFLIPKQECLSVEWDHITMVDDDEVFDGYPWGRVAFELLVNFMNRV 138

[Close]

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL
Match: A0A5A7VN68 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002520 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKEND-LKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNL 60
           +TGL+ H+  ++N  + K    LK V F +   + R+ +   F +     D  + K+  L
Sbjct: 153 ITGLRCHEIPDINHEDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTAGTDDDRIKMAKL 212

Query: 61  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTF 120
           Y LE+F IPKQ+   ++  H+ ++D +E F  YPWG++++ L   F+ KV YS K    F
Sbjct: 213 YFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVTFELLVDFMNKVVYS-KGQTVF 272

Query: 121 KDF 123
             F
Sbjct: 273 SSF 274

[Close]

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL
Match: A0A5A7SRW8 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001090 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 35/110 (31.82%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKEND-LKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNL 60
           +TGL+ H+  ++N  + K    LK V F +   +TR+ +   F +   E D  + K+  L
Sbjct: 11  ITGLRCHEIPDINHEDIKSGGRLKGVYFENLKTVTRQYLNVMFNISTAETDDDRIKMAKL 70

Query: 61  YILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKV 110
           Y LE+F IPKQ+   ++  H+ +++  E F  YPWG++++ L   F+ +V
Sbjct: 71  YFLESFLIPKQECLSVDWDHIIMVEDNEVFDGYPWGRVAFELLVDFMNRV 120

[Close]

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL
Match: W9SF50 (DUF1985 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_010758 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MTGLKRHKFLELNLGERKENDLKNVLFRHDDFITRRDIERTFKVLRNEEDLLKEKLVNLY 60
           +TGL    +  +   +  E+  K   FR    + R  +   F+  R   D    KL  LY
Sbjct: 179 ITGLNCSNYPFIFEKQLPESTTKRKFFRKGKSVQRIKLNDVFRANRGGTDEDIVKLAKLY 238

Query: 61  ILEAFFIPKQQHNHINLQHLDILDHEETFKDYPWGKLSYILTYQFLKKVSYSDKDADTF 120
            LE+  IPK+  N+I+  HL ++D+ E F +YPWG+LSY +T  ++K+ S   ++A+ +
Sbjct: 239 CLESLLIPKKIENNIDPNHLKMVDNPELFDNYPWGRLSYEMTIAYIKR-SIKSQEAEAY 296

The following BLAST results are available for this feature:

BLAST of MELO3C034387.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038287.1	1.4e-14	64.06	DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa]	[more]
KAA0035989.1	5.8e-08	34.55	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0067175.1	2.2e-07	32.52	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0033298.1	6.4e-07	31.82	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
XP_024031030.1	8.3e-07	31.93	uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacte...	[more]

BLAST of MELO3C034387.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9I0	6.9e-15	64.06	DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7T3K3	2.8e-08	34.55	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G002...	[more]
A0A5A7VN68	1.1e-07	32.52	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002...	[more]
A0A5A7SRW8	3.1e-07	31.82	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00...	[more]
W9SF50	4.0e-07	31.93	DUF1985 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_010758 PE...	[more]

BLAST of MELO3C034387.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
IPR015410	Domain of unknown function DUF1985	PFAM	PF09331	DUF1985	coord: 1..102 e-value: 8.1E-13 score: 48.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C034387	MELO3C034387	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034387.1:exon:294194	MELO3C034387.1:exon:294194	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034387.1:cds	MELO3C034387.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C034387.1	MELO3C034387.1-protein	polypeptide