MELO3C033916.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C033916.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCleavage and polyadenylation specificity factor subunit 2
Locationchr09: 14221023 .. 14226217 (-)
Sequence length575
RNA-Seq ExpressionMELO3C033916.1
SyntenyMELO3C033916.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGGTGCAAGACAGAATTCACTCCTACACGCTTTAGGGTTAGTAGATAGGTTGTTCCCTTAAAAACTGAATTCAAGTCTTGGACAAGGGGCCCCACCCTCTCATTGGCTTGAGAAGGATTAGTTTTATATGTTGGACCTTAAACTCAATTGTTCAATAGTGAATCAACGGGACTTAAGGAACAAGATGTAATCTCGGAGGTAAACGACATTTTAACCTAGCCGAGATTACGAACAACTTGTAAAGTATTAACTTACTGATCATGGTTATATCAGATGACATAAATATATCTATAGTAAGGGGAGTACAACTACGAGATTTTAGTGGAATAACCCATTAGTTAACGAATATTGATTTGCTCGGTCTAAAAAGGTTTAACCAGTTATCAGATCATTGGAGTCCATGATCTATAGGTTCATTAGGTTTCCCTGCTAGCTTATACAAAATTAATTTAGAACAACAGGTTAGAATAATTAAAATTGTTCGAATTAGGTAAAGAGAGAGAAATCGACAAATATATATGTGATATAGTTGTTGGTGATCAGTTTTAAATAGAACTTTATGTTTAAATGTGATTTGAATATTAAAAATATGAATACGAATTCATATTCAGAAGCTTAGAATTGATGGAAATGGTCAATGTTGTAAAAGTCAAAATGTTGACTTTTGACTTTGAAAAGTCAAACTTTCACTGGCCTTATATTCAAATGTGATTTGAATTTCAAAAAACAAGAATGTGGATTCATGCTTGGGAGGTCGAAATTTTAGTCAGGACGGAAAAAATGGTAAAAGTTTGACTTTGACTTTAATGGTCAAATGACCAAAATGCCCTTGGACTAAGTCAGTAAAAAAATCCAACATTTGGTTAGAAAATTCCACTAACACTTAGTGGGATAAGTGGCTACATGAGATGTAGACACCTGCCCACTAAGTTCCACTAAGTGTTAGTGGATTATTAGGTATTGAGATTTAAGAAACTAATTACATGCAATTTTACATGTAATTAGTCTATTTAAAGAGAAATTTTCAAATTTACGAGGACTATTGGCAAAATTGTTTATTTTGATTTTCACAAAATTTTAGCAATTTTTTCTCTCAATTCTCAACCTTAAATTCTTTCCAAATTTCCATAACTCTACCTAATTCCTCCACATTACAAGTCCCACAACCCAATTCTAAATCCAAAGAATAACGGGTCAACACCAGTGGTAGTCCCGTCTTCACGTTTGGAGGAAATTGCAAGCATCGGGAAGCTTCGAAGGTATGTTTCTCACTTTATCCCTAATTTCATTTAATTAGGATTCTTTAAACATGATTAATCTCTAAAGTGTTTAAATGTAATTAGAGTAAGATTAGATCTGTTTATTCCGTTGCGCTAGTATGCTTTCCTGAAAAAAGAAAGAGAAAGTGTACTACAAATCTATAGAAAATGAAACAAGTCGATCAGGACTTTAGTTGAATACATTATTAGTAGTCTAGGATCAAGGGAGAGATATTCCTTCATCAGTTATAATTATTATATATATACATATCAAGTTCTGATGAGTCAGTTCTTGGTCAGGACATTGGTTAAATGATTAGAGTGTTGTACCTCTAGTCATAACTGTGTATTCAACAATTACTCCATGAACAATATATATAATCTTTTATCCTGGATCTAAGGCCCCTCTTTGATGTAGATGCTGAGTCATCGAACTGGGTTACCAAACTCTATTGTGTTATCTGTTCTTTTACATGTTTCCTTGGTTCTTTTACATGTTCTTTTACATGTGTCCTTAGTTGATCATTCTATAAGACTTTACAACCAAATACATGAGATTAGGGGTGAGCATCATAGACCAAACACTAAGCTGACCAACCGAATCGAAGTCGGTTGGTCGGTGTTGATTTTGGAAAATTCCATATCGAGAAATTTCAAAAAGTATTTTAACGAGTTAACCGACTAACTAAAAAAACATGACCAACCGACTAAAATTTGTATATCAACCATTGATGTTGGTTTGATAATTTTCTAGTCCGACTATAGTTGGTTCAGTGGCAGTTCGGTAAAAAAACGACTCTGACCGACCAATGATCACTCATACATGAGATAACTCGATTCGATAGCTTAGTTTGGAAAGGTCACATGTATGATAGCGTAGTTAGGAGAGCTTTATACTAGAGATTGGAACCCCACTTTTATATTTTATTAGCGGGGATAGCTCAGTTGGAAGAGCGTCAGATTGAAGATCGATCGAACATGGCAAATGATCATTGAATTTTTTACGTAATACATGAGATTACTCAATTATAAGTATTCAATCTATGTTCACCATATTATGATCACTTGTACATGAAATAAGTCAATTTGGTAACTTAGTTTGGAAATGTCAAAATAGAGATTAATATTAGAGATTTGAACCCCACTTTTGCATTTAAATAGCGGGATAGCTCAGTTGAGAGAGCGTCAGATTAAAGGTATGAAGGTCACATGTTCGATCCATGTTCATCGCACATGATAATTGCACTTTTTATAATCTCTATTTATATAGTTTAAAAAATCGTATATGATTACTAATACATGAAATAACTCAATTCTGAAGGTCACATATTTTATCCGTGATAGCTCATATATGTTTTATGATCCGTGACCTTCATATATGTTTTATGTATACAATACTTTATAACCACATAACGAGAAAAGCTTCATTTGGAGAAGACTAAGGGCCTGTTTGGGGTTAGGGTTAACACTGTGGGCTTAGGTTAGCCCAACCCTAACCCCCGTTTGGGCCAAGGATTATGGAAACCCTAGTTTTAGGGTTTCCATAATCTCCTTTCAATCCGTGTTACCGCTCCGTTCAATCCGTGTTTTCGCCCACCTTCAATCCGTATTTTCGCCTCCTTTCAACCTGTGTTTCTACTCCTCTCAACCAGTGTTTTCGCCTCCCTTCTACCTTCCTTCGATTATCATATTCTCTCTATTATTCGTTATTTGCGCAAAAGTATGTGAAAACACTCTACAACGTTGGTATAGAAGGAATTTTACCGGGGGCGGCCTCTGTAATTCTATGTTGACGAAGTTCTCGCGTTTGCAGTCTCAGGTGAACTGAGGAAAGCGGAAGAAGAAACTATGCATTACTGGGTGAAAGCTTGTCCCTTCGATTTCTCTAGAACTCTTCCTAAACCTCGCAGACATTCATCTCTTTCTCTCTCTACGAATTCTCTTTGATTTTTTTTATAATCATTTTCATGGATTACTCCTATGGAGTTTCAGTGGCCACTCCGCTGTTAACATCAGAAATTTGAAGATCGTCGTGTTTGGTGGCCTCGTCGAAAGCGATATCGCCGTTTTATGAGATCGGTACTTATGCCTTTTACTTTCTCATTTACAGAATTGTACTGCTCTACTACTTTCTTCATCGCTATGTATATAATTTTGGTCTGATAGTTTGTTGCATCATCATTTCCATAGTCTGATCGATCTTCTGTTTGTGTTTATTTTTAACATGGATTGGAGTTGTATTTTGAGTAGTAAACACGTTTCTTAATTCGTTTTTTATTATTTTAATTTTTCTTGATATTGTAAATCGATGTTACCGACTATGGAGTTAAATTATTATGAGACCAGTTTCTCTATTGTTTATGCCTCAACTCTTCTTTTATGGAGATTTATTCACTACAAATTTTGCGATAGCTGTAGAGATAGGTTAGGACGAAGATTTGATGTAAAGGATGTTGCTCATGTCAAGTTTGACAGTAAGTTGATCTTTGGTTAAATTTCTATTAAGGTTTATATTGTTCGGCTTAAGTCATACAAATGTGTATTTAATGTTACTGTCACCAATATATATAGATATATTTAGGTCCATCACTTTTTTCTTCAAATGCTTAATTTTGCTTTTGGTCGATCATCTTTCCTTCGATCAATATGATGATACAATCAAGTTATTTAAATCAATACTCGCCCACGTTGCTCCATTGAAGCTTGTATGGTGTTTTCTTACAAATGCACTTGTGTTATGCATGAATAAGCATGTGCCTTTATAAGTATAGATTGTTGTGCATGAATAAGCACGTGCCTATATAAGTATAGATTGCAGGAAGAAAGTTTTGTTCAACTAAGCTAAGTTGGTATGTTCTGAGAATTCTCTGAGTTGATCGGATTTTAAATTTCCTTATCCCATGTACTTGCCATAGTTTTTTGTTGTTTCAGTATACATGTTCTTGTTACAACAAAAATACTTTAATCAATAATTCAACTGGTTGATTTTGCTTAGTTAATTACATTGTTATTTGAAGGTTTTGGTGCATTTGAAGGTTGATTTTGGCTCGATCCTTATCCCATGTATTTGAAGGTTGATTTTGGCTCGATGCTGAAGTAGGGAAGACTAAGAATGGAACGTTATCTTTATTTCCTCTCTCAAAGGTTCCTGCGGCTCACAAATCTGTTCTTGTTGGTGATTTAAAAATGGCCAACTTCAAAAACTTTCTTGCCAACAAGGGAATACAGGTACCTTTGCTTATGGACCACTAGGAAAGAAAACAAATATCTCCTTTTGATATGTGTATGAACTAAAATCTGCAATTTAGTAAGAAAAGCGAACAATATTGCCGTCCTATATATATGCATTGCAGGTTGAATTTCCTGGGGTTGCTTTGAGATATGGCGAGTATGTCACCCTATGCAAGGTTACAAATGCAAGTCAAAAGGTTAGAACTTCTTAGAAAAATGGAGGAAAATAACTAAATAAATTTGAATGTGACTCTTACTGTTGCTTATTGAATCTGAACCAAAAGAAATACATATTTTCTTTGCTTCTAAGCATAAACACTAAACATAGTACATTCAATTTATGCAGGGTGGTGGTTCTGGTACACAACAAGTTGTCATTGAAGGGTCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTGTATTCACAATTTTATTTGTTATAATTGAAAAACCTTGTTGAACATGGAAGATATCACCCCATCAATTTGAATTGCCTAATTGGAAATGTATTGATTTTTTTTATCTTTCTCAAATGTGTTTTTGAGATATGTTTCAAAGATAAAATTAGACATAATAATTCCCCTCCTTTTCTTTTTTGTTGCTAACTACAATAAGTTCGTTGGCTAGAGTTGGTCGCAGAACAAGCTGCATGCTTAGGGAAAATGTTATCCCCAGATCAAGTGAATCCCAATAA

mRNA sequence

ATGATAAGGTGCAAGACAGAATTCACTCCTACACGCTTTAGGTCCCACAACCCAATTCTAAATCCAAAGAATAACGGGTCAACACCAGTGGTAGTCCCGTCTTCACGTTTGGAGGAAATTGCAAGCATCGGGAAGCTTCGAAGTCCGACTATAGTTGGTTCAGTGGCAGTTCGTGGCCACTCCGCTGTTAACATCAGAAATTTGAAGATCGTCGTGTTTGGTGGCCTCGTCGAAAGCGATATCGCCGTTTTATGAGATCGGTTCCTGCGGCTCACAAATCTGTTCTTGTTGGTGATTTAAAAATGGCCAACTTCAAAAACTTTCTTGCCAACAAGGGAATACAGGTTGAATTTCCTGGGGTTGCTTTGAGATATGGCGAGTATGTCACCCTATGCAAGGTTACAAATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAACAAGTTGTCATTGAAGGGTCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTTTCGTTGGCTAGAGTTGGTCGCAGAACAAGCTGCATGCTTAGGGAAAATGTTATCCCCAGATCAAGTGAATCCCAATAA

Coding sequence (CDS)

ATGAGATCGGTTCCTGCGGCTCACAAATCTGTTCTTGTTGGTGATTTAAAAATGGCCAACTTCAAAAACTTTCTTGCCAACAAGGGAATACAGGTTGAATTTCCTGGGGTTGCTTTGAGATATGGCGAGTATGTCACCCTATGCAAGGTTACAAATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAACAAGTTGTCATTGAAGGGTCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTTTCGTTGGCTAGAGTTGGTCGCAGAACAAGCTGCATGCTTAGGGAAAATGTTATCCCCAGATCAAGTGAATCCCAATAA

Protein sequence

MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVIEGSLCEDYYKIQDLFSLARVGRRTSCMLRENVIPRSSESQ
Homology
[Close]
BLAST of MELO3C033916.1 vs. NCBI nr
Match: XP_004140773.1 (cleavage and polyadenylation specificity factor subunit 2 [Cucumis sativus] >KGN57386.1 hypothetical protein Csa_010311 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGS 60
           +   PA HKSVLVGDLKMA+FK FLA+KGIQVEF G ALR GEYVTL KVT+ASQKGGGS
Sbjct: 650 LSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGS 709

Query: 61  GTQQVVIEGSLCEDYYKIQDL 82
           GTQQVVIEG LCEDYYKI++L
Sbjct: 710 GTQQVVIEGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. NCBI nr
Match: XP_008439247.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGS 60
           +   PA HKSVLVGDLKMA+FK FLA+KGIQVEF G ALR GEYVTL KVT+ASQKGGGS
Sbjct: 650 LSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGS 709

Query: 61  GTQQVVIEGSLCEDYYKIQDL 82
           GTQQVVIEG LCEDYYKI++L
Sbjct: 710 GTQQVVIEGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. NCBI nr
Match: KAF3432974.1 (hypothetical protein FNV43_RR24076 [Rhamnella rubrinervis])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 5   PAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQ 64
           P AHKSVLVGDLKMANFK FLA+ G+QVEF G ALR GEYVTL KV +AS KGGGSGTQQ
Sbjct: 624 PPAHKSVLVGDLKMANFKQFLADNGVQVEFAGGALRCGEYVTLRKVGDASHKGGGSGTQQ 683

Query: 65  VVIEGSLCEDYYKIQD 81
           +VIEG LCEDYYKI+D
Sbjct: 684 IVIEGPLCEDYYKIRD 699

[Close]
BLAST of MELO3C033916.1 vs. NCBI nr
Match: XP_038899782.1 (cleavage and polyadenylation specificity factor subunit 2 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-25
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 8   HKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVI 67
           HKSVLVGDLKMA+FK FLA+KGIQVEF G ALR GEYVTL KVT+ASQKGGGSGT QVVI
Sbjct: 657 HKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTHQVVI 716

Query: 68  EGSLCEDYYKIQDL 82
           EG LCEDYYKI++L
Sbjct: 717 EGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. NCBI nr
Match: KAG6576721.1 (Cleavage and polyadenylation specificity factor subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 4.5e-25
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 8    HKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVI 67
            HKSVLVGDLKMA+FK FL++KGIQVEF G ALR GEYVTL KV++ASQKGGGSGTQQVVI
Sbjct: 1014 HKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRKVSDASQKGGGSGTQQVVI 1073

Query: 68   EGSLCEDYYKIQDL 82
            EG LCEDYYKI++L
Sbjct: 1074 EGPLCEDYYKIREL 1087

[Close]
BLAST of MELO3C033916.1 vs. ExPASy Swiss-Prot
Match: Q652P4 (Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0569400 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-26
Identity = 57/79 (72.15%), Postives = 68/79 (86.08%), Query Frame = 0 

Query: 3   SVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGT 62
           S PAAHKSVLVGDLK+A+FK FLANKG+QVEF G ALR GEY+TL K+ +A QK G +G+
Sbjct: 653 STPAAHKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQK-GSTGS 712

Query: 63  QQVVIEGSLCEDYYKIQDL 82
           QQ+VIEG LCEDYYKI++L
Sbjct: 713 QQIVIEGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. ExPASy Swiss-Prot
Match: Q9LKF9 (Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CPSF100 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-22
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 1   MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFP-GVALRYGEYVTLCKVTNASQKGGG 60
           M    + HK VLVGDLK+A+FK FL++KG+QVEF  G ALR GEYVTL KV    QKGG 
Sbjct: 650 MPGAASPHKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGA 709

Query: 61  SGTQQVVIEGSLCEDYYKIQD 81
           SG QQ++IEG LCEDYYKI+D
Sbjct: 710 SGPQQILIEGPLCEDYYKIRD 730

[Close]
BLAST of MELO3C033916.1 vs. ExPASy Swiss-Prot
Match: Q10568 (Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-05
Identity = 24/74 (32.43%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 8   HKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVI 67
           H+SV + + ++++FK  L  +GIQ EF G  L     V + +          + T ++ +
Sbjct: 711 HQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGL 770

Query: 68  EGSLCEDYYKIQDL 82
           EG LC+D+Y+I+DL
Sbjct: 771 EGCLCQDFYRIRDL 774

[Close]
BLAST of MELO3C033916.1 vs. ExPASy Swiss-Prot
Match: Q9P2I0 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-05
Identity = 24/74 (32.43%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 8   HKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVI 67
           H+SV + + ++++FK  L  +GIQ EF G  L     V + +          + T ++ +
Sbjct: 711 HQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGL 770

Query: 68  EGSLCEDYYKIQDL 82
           EG LC+D+Y+I+DL
Sbjct: 771 EGCLCQDFYRIRDL 774

[Close]
BLAST of MELO3C033916.1 vs. ExPASy Swiss-Prot
Match: O35218 (Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-05
Identity = 24/74 (32.43%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 8   HKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVI 67
           H+SV + + ++++FK  L  +GIQ EF G  L     V + +          + T ++ +
Sbjct: 711 HQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGL 770

Query: 68  EGSLCEDYYKIQDL 82
           EG LC+D+Y+I+DL
Sbjct: 771 EGCLCQDFYRIRDL 774

[Close]
BLAST of MELO3C033916.1 vs. ExPASy TrEMBL
Match: A0A0A0LBF9 (Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_3G182220 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGS 60
           +   PA HKSVLVGDLKMA+FK FLA+KGIQVEF G ALR GEYVTL KVT+ASQKGGGS
Sbjct: 650 LSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGS 709

Query: 61  GTQQVVIEGSLCEDYYKIQDL 82
           GTQQVVIEG LCEDYYKI++L
Sbjct: 710 GTQQVVIEGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. ExPASy TrEMBL
Match: A0A1S3AXY2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis melo OX=3656 GN=LOC103484088 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1   MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGS 60
           +   PA HKSVLVGDLKMA+FK FLA+KGIQVEF G ALR GEYVTL KVT+ASQKGGGS
Sbjct: 650 LSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGS 709

Query: 61  GTQQVVIEGSLCEDYYKIQDL 82
           GTQQVVIEG LCEDYYKI++L
Sbjct: 710 GTQQVVIEGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. ExPASy TrEMBL
Match: A0A067JVV4 (Cleavage and polyadenylation specificity factor subunit 2 OS=Jatropha curcas OX=180498 GN=JCGZ_25772 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 5   PAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQ 64
           P  HKSVLVGDLKMA+FK FLA+KG+QVEF G ALR GEYVTL K+ N SQKGGGSGTQQ
Sbjct: 657 PPPHKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKIGNVSQKGGGSGTQQ 716

Query: 65  VVIEGSLCEDYYKIQD 81
           +VIEG LCEDYYKI++
Sbjct: 717 IVIEGPLCEDYYKIRE 732

[Close]
BLAST of MELO3C033916.1 vs. ExPASy TrEMBL
Match: A0A6J1E3G2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111430467 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-25
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 8   HKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGTQQVVI 67
           HKSVLVGDLKMA+FK FL++KGIQVEF G ALR GEYVTL KV++ASQKGGGSGTQQVVI
Sbjct: 657 HKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRKVSDASQKGGGSGTQQVVI 716

Query: 68  EGSLCEDYYKIQDL 82
           EG LCEDYYKI++L
Sbjct: 717 EGPLCEDYYKIREL 730

[Close]
BLAST of MELO3C033916.1 vs. ExPASy TrEMBL
Match: A0A4P1RC69 (Cleavage and polyadenylation specificity factor subunit 2 OS=Lupinus angustifolius OX=3871 GN=TanjilG_20134 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 3   SVPAAHKSVLVGDLKMANFKNFLANKGIQVEFPGVALRYGEYVTLCKVTNASQKGGGSGT 62
           + P  HKSVLVGDLK+A+FK FL++KG+QVEF G ALR GEYVTL KV +ASQKGGGSGT
Sbjct: 653 AAPPPHKSVLVGDLKLADFKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGT 712

Query: 63  QQVVIEGSLCEDYYKIQD 81
           QQ+VIEG LCEDYYKI+D
Sbjct: 713 QQIVIEGPLCEDYYKIRD 730

[Close]
BLAST of MELO3C033916.1 vs. TAIR 10
Match: AT5G23880.1 (cleavage and polyadenylation specificity factor 100 )

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-23
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 1   MRSVPAAHKSVLVGDLKMANFKNFLANKGIQVEFP-GVALRYGEYVTLCKVTNASQKGGG 60
           M    + HK VLVGDLK+A+FK FL++KG+QVEF  G ALR GEYVTL KV    QKGG 
Sbjct: 650 MPGAASPHKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGA 709

Query: 61  SGTQQVVIEGSLCEDYYKIQD 81
           SG QQ++IEG LCEDYYKI+D
Sbjct: 710 SGPQQILIEGPLCEDYYKIRD 730

The following BLAST results are available for this feature:
BLAST of MELO3C033916.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140773.12.8e-2780.25cleavage and polyadenylation specificity factor subunit 2 [Cucumis sativus] >KGN... [more]
XP_008439247.12.8e-2780.25PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Cucumis me... [more]
KAF3432974.11.6e-2580.26hypothetical protein FNV43_RR24076 [Rhamnella rubrinervis][more]
XP_038899782.12.7e-2583.78cleavage and polyadenylation specificity factor subunit 2 [Benincasa hispida][more]
KAG6576721.14.5e-2582.43Cleavage and polyadenylation specificity factor subunit 2, partial [Cucurbita ar... [more]
BLAST of MELO3C033916.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q652P47.2e-2672.15Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp.... [more]
Q9LKF92.9e-2265.43Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thalian... [more]
Q105685.4e-0532.43Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 ... [more]
Q9P2I05.4e-0532.43Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=960... [more]
O352185.4e-0532.43Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=100... [more]
BLAST of MELO3C033916.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBF91.4e-2780.25Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis sativus OX=... [more]
A0A1S3AXY21.4e-2780.25Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis melo OX=365... [more]
A0A067JVV42.2e-2577.63Cleavage and polyadenylation specificity factor subunit 2 OS=Jatropha curcas OX=... [more]
A0A6J1E3G22.2e-2582.43Cleavage and polyadenylation specificity factor subunit 2 OS=Cucurbita moschata ... [more]
A0A4P1RC692.9e-2575.64Cleavage and polyadenylation specificity factor subunit 2 OS=Lupinus angustifoli... [more]
BLAST of MELO3C033916.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G23880.12.0e-2365.43cleavage and polyadenylation specificity factor 100 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025069Cleavage and polyadenylation specificity factor 2, C-terminalPFAMPF13299CPSF100_Ccoord: 6..81
e-value: 3.2E-10
score: 40.5
IPR027075Cleavage and polyadenylation specificity factor subunit 2PANTHERPTHR45922CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2coord: 6..81

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C033916MELO3C033916gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033916.1:exon:270921MELO3C033916.1:exon:270921exon
MELO3C033916.1:exon:270920MELO3C033916.1:exon:270920exon
MELO3C033916.1:exon:270919MELO3C033916.1:exon:270919exon
MELO3C033916.1:exon:270918MELO3C033916.1:exon:270918exon
MELO3C033916.1:exon:270917MELO3C033916.1:exon:270917exon
MELO3C033916.1:exon:270916MELO3C033916.1:exon:270916exon
MELO3C033916.1:exon:270915MELO3C033916.1:exon:270915exon
MELO3C033916.1:exon:270914MELO3C033916.1:exon:270914exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033916.1:cdsMELO3C033916.1:cdsCDS
MELO3C033916.1:cdsMELO3C033916.1:cds_2CDS
MELO3C033916.1:cdsMELO3C033916.1:cds_3CDS
MELO3C033916.1:cdsMELO3C033916.1:cds_4CDS
MELO3C033916.1:cdsMELO3C033916.1:cds_5CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033916.1:five_prime_utrMELO3C033916.1:five_prime_utrfive_prime_UTR
MELO3C033916.1:five_prime_utrMELO3C033916.1:five_prime_utr_2five_prime_UTR
MELO3C033916.1:five_prime_utrMELO3C033916.1:five_prime_utr_3five_prime_UTR
MELO3C033916.1:five_prime_utrMELO3C033916.1:five_prime_utr_4five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C033916.1MELO3C033916.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006378 mRNA polyadenylation
cellular_component GO:0005847 mRNA cleavage and polyadenylation specificity factor complex