MELO3C033757.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033757.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr09: 17273220 .. 17273645 (-)
Sequence length	426
RNA-Seq Expression	MELO3C033757.jh1.t1
Synteny	MELO3C033757.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGATGGGAACGAGGAGTTTCCATCCATGTATAGCCAGGGGATTGACATGTCCCAGGAGGATGTACGCGCATCACGACCTTCTCACACGTCAAAGGGTAGGATCAGATCGAGCGGATCGAAGAGGAAAAGGGAAAGCCAGCAGAAGGGCGAGATTGAAGTCATACATATGGCCATCGAGTGTACCAACGACCAACTCAGGGCGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCCAGGAATTATTACGCCTATTGCATGTGATGCCGGAACTAACCAGTTTGGATAGGGCGTTGTGCCAAAGGCACCTGTTGTCTCGTATAGACGACATGCGAGGTTTCATACAGATGATTGATGATGAGAGGCAGAACTTTTGCAGAGTCCTCCTAGGAGACATCTCTAGATAG

mRNA sequence

ATGCTGGATGGGAACGAGGAGTTTCCATCCATGTATAGCCAGGGGATTGACATGTCCCAGGAGGATGTACGCGCATCACGACCTTCTCACACGTCAAAGGGTAGGATCAGATCGAGCGGATCGAAGAGGAAAAGGGAAAGCCAGCAGAAGGGCGAGATTGAAGTCATACATATGGCCATCGAGTGTACCAACGACCAACTCAGGGCGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCCAGGAATTATTACGCCTATTGCATGTGATGCCGGAACTAACCAGTTTGGATAGGGCGTTGTGCCAAAGGCACCTGTTGTCTCGTATAGACGACATGCGAGGTTTCATACAGATGATTGATGATGAGAGGCAGAACTTTTGCAGAGTCCTCCTAGGAGACATCTCTAGATAG

Coding sequence (CDS)

ATGCTGGATGGGAACGAGGAGTTTCCATCCATGTATAGCCAGGGGATTGACATGTCCCAGGAGGATGTACGCGCATCACGACCTTCTCACACGTCAAAGGGTAGGATCAGATCGAGCGGATCGAAGAGGAAAAGGGAAAGCCAGCAGAAGGGCGAGATTGAAGTCATACATATGGCCATCGAGTGTACCAACGACCAACTCAGGGCGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCCAGGAATTATTACGCCTATTGCATGTGATGCCGGAACTAACCAGTTTGGATAGGGCGTTGTGCCAAAGGCACCTGTTGTCTCGTATAGACGACATGCGAGGTTTCATACAGATGATTGATGATGAGAGGCAGAACTTTTGCAGAGTCCTCCTAGGAGACATCTCTAGATAG

Protein sequence

MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGFIQMIDDERQNFCRVLLGDISR

Homology

[Close]

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (691), Expect = 5.17e-90
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI
Sbjct: 79  MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           ECTNDQLR I EWPARALANDTHVRQELLRLLHVMPELTSLDR LCQRHLLSR+DDMRGF
Sbjct: 139 ECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGF 198

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           IQMIDDERQNFCRVLLGDISR
Sbjct: 199 IQMIDDERQNFCRVLLGDISR 219

[Close]

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 2.38e-64
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           M DGNEEF S+YSQGIDMSQEDV AS+P+HTS  R RSS  KRKR SQQKGEI+VIHMA+
Sbjct: 54  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 113

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           +C NDQL+ IVEW ARALAN+THV QE +RLL  M EL++LDRALCQRHL+S +DDM GF
Sbjct: 114 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 173

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           +QM +DERQNFCRVLL D SR
Sbjct: 174 VQMTNDERQNFCRVLLRDFSR 194

[Close]

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr
Match: KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 1.05e-61
Identity = 100/139 (71.94%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 3   DGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIEC 62
           DGN+EFPS+Y+QGI+MSQEDVRAS+PS   +GR+ SSGSKRKR SQQ+ E+EVI+MA EC
Sbjct: 105 DGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMAREC 164

Query: 63  TNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGFIQ 122
           TNDQL+ + EWPARALAND HVRQ+   +L  MPELT LDRAL QRHLLSR+DD+RGFIQ
Sbjct: 165 TNDQLKIVAEWPARALANDNHVRQKFFCILRAMPELTRLDRALLQRHLLSRMDDIRGFIQ 224

Query: 123 MIDDERQNFCRVLLGDISR 141
           M DDER++FC V+L DISR
Sbjct: 225 MPDDERESFCGVILRDISR 243

[Close]

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr
Match: TYK01823.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 6.39e-60
Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           M DGNE+F  +YSQGID+SQ+DVRASRPS  S+GR RSSGSKRKR SQ+  E+E IH+A+
Sbjct: 1   MGDGNEDFSPVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 60

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           + TN+QLR IVEWPA  LAND HVR E  R+L  MPELTSLDRAL QRHLLSR+DD+RGF
Sbjct: 61  DQTNEQLRQIVEWPASNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           + M +DER+ FCRVLL DI R
Sbjct: 121 VLMPEDEREEFCRVLLRDIER 141

[Close]

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr
Match: KAA0067987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 7.19e-60
Identity = 98/141 (69.50%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           M DGN++FPS+YSQGID+SQ+DVRASRPS  S+GR RSSGSKRKR SQ+  E+E IH+A+
Sbjct: 139 MGDGNKDFPSVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 198

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           + TN+QLR I EWP R LAND HVR E  R+L  MPELTSLDRAL QRHLLSR+DD+RGF
Sbjct: 199 DQTNEQLRQIAEWPTRNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 258

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           + M++DER+ FCRVLL DI R
Sbjct: 259 VLMLEDEREGFCRVLLRDIER 279

[Close]

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.50e-90
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI
Sbjct: 79  MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           ECTNDQLR I EWPARALANDTHVRQELLRLLHVMPELTSLDR LCQRHLLSR+DDMRGF
Sbjct: 139 ECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGF 198

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           IQMIDDERQNFCRVLLGDISR
Sbjct: 199 IQMIDDERQNFCRVLLGDISR 219

[Close]

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 1.15e-64
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           M DGNEEF S+YSQGIDMSQEDV AS+P+HTS  R RSS  KRKR SQQKGEI+VIHMA+
Sbjct: 54  MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 113

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           +C NDQL+ IVEW ARALAN+THV QE +RLL  M EL++LDRALCQRHL+S +DDM GF
Sbjct: 114 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 173

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           +QM +DERQNFCRVLL D SR
Sbjct: 174 VQMTNDERQNFCRVLLRDFSR 194

[Close]

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 199 bits (507), Expect = 5.10e-62
Identity = 100/139 (71.94%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 3   DGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIEC 62
           DGN+EFPS+Y+QGI+MSQEDVRAS+PS   +GR+ SSGSKRKR SQQ+ E+EVI+MA EC
Sbjct: 105 DGNKEFPSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMAREC 164

Query: 63  TNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGFIQ 122
           TNDQL+ + EWPARALAND HVRQ+   +L  MPELT LDRAL QRHLLSR+DD+RGFIQ
Sbjct: 165 TNDQLKIVAEWPARALANDNHVRQKFFCILRAMPELTRLDRALLQRHLLSRMDDIRGFIQ 224

Query: 123 MIDDERQNFCRVLLGDISR 141
           M DDER++FC V+L DISR
Sbjct: 225 MPDDERESFCGVILRDISR 243

[Close]

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BQ59 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00640 PE=4 SV=1)

HSP 1 Score: 191 bits (486), Expect = 3.09e-60
Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           M DGNE+F  +YSQGID+SQ+DVRASRPS  S+GR RSSGSKRKR SQ+  E+E IH+A+
Sbjct: 1   MGDGNEDFSPVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 60

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           + TN+QLR IVEWPA  LAND HVR E  R+L  MPELTSLDRAL QRHLLSR+DD+RGF
Sbjct: 61  DQTNEQLRQIVEWPASNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           + M +DER+ FCRVLL DI R
Sbjct: 121 VLMPEDEREEFCRVLLRDIER 141

[Close]

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7VL88 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001760 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 3.48e-60
Identity = 98/141 (69.50%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 1   MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 60
           M DGN++FPS+YSQGID+SQ+DVRASRPS  S+GR RSSGSKRKR SQ+  E+E IH+A+
Sbjct: 139 MGDGNKDFPSVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLAL 198

Query: 61  ECTNDQLRAIVEWPARALANDTHVRQELLRLLHVMPELTSLDRALCQRHLLSRIDDMRGF 120
           + TN+QLR I EWP R LAND HVR E  R+L  MPELTSLDRAL QRHLLSR+DD+RGF
Sbjct: 199 DQTNEQLRQIAEWPTRNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 258

Query: 121 IQMIDDERQNFCRVLLGDISR 141
           + M++DER+ FCRVLL DI R
Sbjct: 259 VLMLEDEREGFCRVLLRDIER 279

The following BLAST results are available for this feature:

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050190.1	5.17e-90	97.16	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]
KAA0050806.1	2.38e-64	73.76	retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p...	[more]
KAA0065782.1	1.05e-61	71.94	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p...	[more]
TYK01823.1	6.39e-60	69.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067987.1	7.19e-60	69.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033757.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4I8	2.50e-90	97.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9D5	1.15e-64	73.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BD15	5.10e-62	71.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQ59	3.09e-60	69.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VL88	3.48e-60	69.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033757.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C033757.jh1	MELO3C033757.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033757.jh1.t1.exon	MELO3C033757.jh1.t1.exon	exon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033757.jh1.t1.stop_codon	MELO3C033757.jh1.t1.stop_codon	stop_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033757.jh1.t1.cds	MELO3C033757.jh1.t1.cds	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033757.jh1.t1.start_codon	MELO3C033757.jh1.t1.start_codon	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C033757.jh1.t1	MELO3C033757.jh1.t1-protein	polypeptide