MELO3C033544.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C033544.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr09: 2048759 .. 2049659 (-)
Sequence length739
RNA-Seq ExpressionMELO3C033544.1
SyntenyMELO3C033544.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGAAAGCTCGAGTTAACAAACAAGGACAGTACGACAACGACGACATTCAGCAAATTGTCCATAAAATAGTAAGTAATTACATGTAAATTACACATTTCAACTATTCATTACATAAGCAAGCATTTCTATAACTTGCATTAATTTTGCTATCTTTTTATGATGAGATATTAATGAATACAGATTCATCGTCTGTGAACAGACACTATTCGAATGATGTGTTAATCCAAGCATTGGGCAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACATTACTCCGACAACGTACTTTCATTTAGTTAAGAAAACATCAAAAGATGAGACGAACATTCTAGTTGAGAATGAAGAACTCCGAAGGCAAGTTAGTGAATTAAAGGCACAAATTTGCTCAAACTTGGCTACACCATTGTCTGCACACGGGAGTTGTTCAAGGCCAATAATGTTAGAGGGGATTGAAGAGAAGGGTACAAGAATAGAAGTGGAATCGATGGACAAACCAAAAGAGAATTAAAAGGAAGGGAAGGAGGTGATGAAGATGAATGAACCAAAGTTTGACGTTTTGAAAGTATGTAATCCACTATTAAACTGGAATGTCTAATATTGTATGTCTTATTGAATGTGGATGTTCTTGAATTAGGAGAGGGACTTAATAAAAATGCCTACGGAAAAAGAAGTTGTATGTGAGTCGACATCAACTTTGCCATTAGCTTTGAAATCGATTCTCAGATATGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCACTTTTTCACTACCAGCTGACATTTTTGGTATTAGTCGAAAGCGCTCTGTGCTTTGAGAGGATATAATTGATCTTTGTTACATGAACGATGTCAAAACGTTCACATTGGTGGCCTATATGATGTAA

mRNA sequence

ATGTGGAAGAAAGCTCGAGTTAACAAACAAGGACAGTACGACAACGACGACATTCAGCAAATTGTCCATAAAATAGATGAGATATTAATGAATACAGATTCATCGTCTGTGAACAGACACTATTCGAATGATGTGTTAATCCAAGCATTGGGCAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACATTACTCCGACAACGTACTTTCATTTAGTTAAGAAAACATCAAAAGATGAGACGAACATTCTAGTTGAGAATGAAGAACTCCGAAGGCAAGTTAGTGAATTAAAGGCACAAATTTGCTCAAACTTGGCTACACCATTGTCTGCACACGGGAGTTGTTCAAGGCCAATAATGTTAGAGGGGATTGAAGAGAAGGGTACAAGAATAGAAGTGGAATCGATGGACAAACCAAAAGAGAATTAAAAGGAAGGGAAGGAGGTGATGAAGATGAATGAACCAAAGTTTGACGTTTTGAAAGAGAGGGACTTAATAAAAATGCCTACGGAAAAAGAAGTTGTATGTGAGTCGACATCAACTTTGCCATTAGCTTTGAAATCGATTCTCAGATATGTTGAGAAGGTAATGGAGAAAGATTCCAGCATCACTTTTTCACTACCAGCTGACATTTTTGGTATTAGTCGAAAGCGCTCTGTGCTTTGAGAGGATATAATTGATCTTTGTTACATGAACGATGTCAAAACGTTCACATTGGTGGCCTATATGATGTAA

Coding sequence (CDS)

ATGTGGAAGAAAGCTCGAGTTAACAAACAAGGACAGTACGACAACGACGACATTCAGCAAATTGTCCATAAAATAGATGAGATATTAATGAATACAGATTCATCGTCTGTGAACAGACACTATTCGAATGATGTGTTAATCCAAGCATTGGGCAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACATTACTCCGACAACGTACTTTCATTTAGTTAA

Protein sequence

MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKRAQWSCAWGWWIHYSDNVLSFS
Homology
[Close]
BLAST of MELO3C033544.1 vs. NCBI nr
Match: KAA0054362.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa] >TYK12400.1 putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKRAQWSCAW 60
          MWKKARVNKQGQYDNDDI+ +VHKIDEI MNT SSSVNRHYSNDVL     KRAQWSCAW
Sbjct: 16 MWKKARVNKQGQYDNDDIKHVVHKIDEISMNTGSSSVNRHYSNDVLTCIGYKRAQWSCAW 75

Query: 61 GWWIHYSDN 70
          GWWIHYS+N
Sbjct: 76 GWWIHYSNN 84

[Close]
BLAST of MELO3C033544.1 vs. NCBI nr
Match: KAA0064299.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 6.3e-18
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKARVNKQGQYDNDDIQQ+VHKI+EI MNTDSSSVNRHYSNDVL QALG +
Sbjct: 1  MWKKARVNKQGQYDNDDIQQVVHKINEISMNTDSSSVNRHYSNDVLTQALGTK 53

[Close]
BLAST of MELO3C033544.1 vs. NCBI nr
Match: TYK01921.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 6.3e-18
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKARVNKQGQYDNDDIQQ+VHKI+EI MNTDSSSVNRHYSNDVL QALG +
Sbjct: 1  MWKKARVNKQGQYDNDDIQQVVHKINEISMNTDSSSVNRHYSNDVLTQALGTK 53

[Close]
BLAST of MELO3C033544.1 vs. NCBI nr
Match: TYK05022.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 6.3e-18
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKA+VNKQGQYDNDD+QQ+VHKIDEILMNTDSSSVNRHY NDVL QALG +
Sbjct: 1  MWKKAQVNKQGQYDNDDVQQVVHKIDEILMNTDSSSVNRHYLNDVLTQALGTK 53

[Close]
BLAST of MELO3C033544.1 vs. NCBI nr
Match: KAA0037447.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 6.3e-18
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKARVNKQGQYDNDDIQQ+VHKI+EI MNTDSSSVNRHYSNDVL QALG +
Sbjct: 16 MWKKARVNKQGQYDNDDIQQVVHKINEISMNTDSSSVNRHYSNDVLTQALGTK 68

[Close]
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match: A0A5A7UF25 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001840 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKRAQWSCAW 60
          MWKKARVNKQGQYDNDDI+ +VHKIDEI MNT SSSVNRHYSNDVL     KRAQWSCAW
Sbjct: 16 MWKKARVNKQGQYDNDDIKHVVHKIDEISMNTGSSSVNRHYSNDVLTCIGYKRAQWSCAW 75

Query: 61 GWWIHYSDN 70
          GWWIHYS+N
Sbjct: 76 GWWIHYSNN 84

[Close]
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match: A0A5A7VFJ0 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G002770 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKARVNKQGQYDNDDIQQ+VHKI+EI MNTDSSSVNRHYSNDVL QALG +
Sbjct: 1  MWKKARVNKQGQYDNDDIQQVVHKINEISMNTDSSSVNRHYSNDVLTQALGTK 53

[Close]
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match: A0A5A7T7B1 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00330 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKARVNKQGQYDNDDIQQ+VHKI+EI MNTDSSSVNRHYSNDVL QALG +
Sbjct: 16 MWKKARVNKQGQYDNDDIQQVVHKINEISMNTDSSSVNRHYSNDVLTQALGTK 68

[Close]
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match: A0A5D3C1G4 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002760 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKA+VNKQGQYDNDD+QQ+VHKIDEILMNTDSSSVNRHY NDVL QALG +
Sbjct: 1  MWKKAQVNKQGQYDNDDVQQVVHKIDEILMNTDSSSVNRHYLNDVLTQALGTK 53

[Close]
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match: A0A5D3BQ76 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00070 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MWKKARVNKQGQYDNDDIQQIVHKIDEILMNTDSSSVNRHYSNDVLIQALGKR 54
          MWKKARVNKQGQYDNDDIQQ+VHKI+EI MNTDSSSVNRHYSNDVL QALG +
Sbjct: 1  MWKKARVNKQGQYDNDDIQQVVHKINEISMNTDSSSVNRHYSNDVLTQALGTK 53

The following BLAST results are available for this feature:
BLAST of MELO3C033544.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054362.12.2e-2684.06putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa] >TYK124... [more]
KAA0064299.16.3e-1888.68putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
TYK01921.16.3e-1888.68putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
TYK05022.16.3e-1886.79putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
KAA0037447.16.3e-1888.68putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033544.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UF251.0e-2684.06Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7VFJ03.1e-1888.68Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T7B13.1e-1888.68Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3C1G43.1e-1886.79Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BQ763.1e-1888.68Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C033544.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C033544MELO3C033544gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033544.1:exon:258363MELO3C033544.1:exon:258363exon
MELO3C033544.1:exon:258362MELO3C033544.1:exon:258362exon
MELO3C033544.1:exon:258361MELO3C033544.1:exon:258361exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033544.1:three_prime_utrMELO3C033544.1:three_prime_utrthree_prime_UTR
MELO3C033544.1:three_prime_utrMELO3C033544.1:three_prime_utr_2three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033544.1:cdsMELO3C033544.1:cdsCDS
MELO3C033544.1:cdsMELO3C033544.1:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C033544.1MELO3C033544.1-proteinpolypeptide