MELO3C032742.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032742.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr07: 15673772 .. 15676103 (-)
Sequence length	1169
RNA-Seq Expression	MELO3C032742.jh1.t1
Synteny	MELO3C032742.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCAATGTTCCTCCATATTATTGCGCACGACGTGAAAAACCGTGTCATTCAACGGGAGTTCATGCGGTCGGGTGAGACAATTTTCCGTCATTTTAACATGGTCTTGTTGGCCGTTATTCGGCTTCATGACGAGCTTTTGAAAAAACCACAACTAGTAAATAGTGATTGCACATATCAAAGATGGAGGTGGGTTGAGGTGCCTATTTCTCTCCAACTACGTACTTCAAACCCAACGACGTACTTCAAACCCAACGACGTTAGGTCTTCCCAATAATCTTTAGTTATGTGTTGCAGAATTGCCTAGGTGCATTAGATGAAACATACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGATATAGAACACGCAAAGGAGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACAAAAGGAGATTTTGTTTATGTACTTGCCGGTTGGGAAGGATCAGTTGCGGACTCACGCATTCTTCTTGATGCCATTTCAAGACCTAATGGCCTGAAGGTGTCCAAGGGTAATATCCTACGACATTGTACATATGAATGAAATTATGCAATTAACAGCTACGACATTTTAATCGTGCAATGTGATCACAGGGTATTACTACTTGGTTTATGCGGGTAACCCAAATGCCGATGGTTTTCTAGCACCGTACAGAGGCCAACGCTACCACTTGCAGGAATGGCGTGGCGCTGAAAATGCACCTTCAACGTCGAAAGAGTTCTTTAATATGAAGCATTCGTCTACTCGTAATATAATCGAAAGAGCATTCAGTGTCTTGAAGGGTCGATGGGCAATATTGCGGGAAAAGTCATACTACCCTGTAAAAGTCCAATGTCGCACAATACTCACATGTTGTCTCCTCCACAACCTTATCAATAGAGAGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACTCACGCGACTACTGCTGCCGATGACATACATTACATAGAGACGTCCAATGAGTGGACTCAATGGAGGGACGACCTTTCAGAAGAAATGTTTAATGTTTGGGAGTTGCGTAACTAGTAGAAAAATAAAATGTTTCCTGTTCATTTTCATACTTAAGTAGTGATTGCACTGGGTCTTATTTTGTCATAGTTTTTGGAATATGATTATTTTGAATGTATTGGTTATGATAGTAAATTAATGCCAGACTGTTTTTCACTAGGAGTTGACTGTACTATGAAACTAATCGTATGTATGTTATCTAATCATAGGAAAATTAATGAAACTAAGATGTTTGCGTTTGACATCTAGCATGACAAGTTCATCGAGACTACCTAAACACAGTTGGACTAAAGAAGAAGAGGCAGGCCTCGTTGAGTGCCTCGTGGAGTTGGTCAATGCTAGTGGGTGGAGGTCCGACAACGGAACCTTTTGCCCCGAGTACTTAAATCAACTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACGATCGATAGCCGAATCAAATTGATGAAGAGAATGTTCCATGCACTTGCGGAGATGCGTGGCCCAACGTGTAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCACAGTGAAAGAAGTATTCGACGATTGGGTCAAGGTGTGTTACTAGTCATTTGAATGGTTACAGTACTATATTTTAATAAATGGACTAACAATTTATTATTGCACTTATATAGAGTCATCCGGTGGCGAAGGGCCTTCTGAATAAGTCGTTTCCCCACTATGACGAACGGTTGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGGGCCAAGAGTTTTGCAGACGTTGGGTCAAACAATCCTGCTGGGTATGACGCATTTGTCGCTGACGCTACGCCGGATACGGACTTCCCGCCAATGTACAGTCAGGGATTGAACATGTCGCCTGATGATTTGATGGGAACAAGAATCGCTCGGGTCAGTGAGCGTAGGAATGTTTCAAGCGGGTCTAAGCAAAAACGTGCATGACATGTCGCAGATAGTGGGGACATAGTTAGCACTACGATTGAGTACGAAAATGAACAACTGAACCGCATTGCTGAATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTCGCTTAATGTGTATACTTATGCTTAACGTCGATGACATAAAAGCTTTCCTTGACGTTCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAATCGATGATTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTCGAC

mRNA sequence

ATGGTAGCAATGTTCCTCCATATTATTGCGCACGACGTGAAAAACCGTGTCATTCAACGGGAGTTCATGCGGTCGGGTGAGACAATTTTCCGTCATTTTAACATGGTCTTGTTGGCCGTTATTCGGCTTCATGACGAGCTTTTGAAAAAACCACAACTAGTAAATAGAAAATTAATGAAACTAAGATGTTTGCGTTTGACATCTAGCATGACAAGTTCATCGAGACTACCTAAACACAGTTGGACTAAAGAAGAAGAGGCAGGCCTCGTTGAGTGCCTCGTGGAGTTGGTCAATGCTAGTGGGTGGAGGTCCGACAACGGAACCTTTTGCCCCGAGTACTTAAATCAACTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACGATCGATAGCCGAATCAAATTGATGAAGAGAATGTTCCATGCACTTGCGGAGATGCGTGGCCCAACGTGTAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCACAGTGAAAGAAGTATTCGACGATTGGGTCAAGAGTCATCCGGTGGCGAAGGGCCTTCTGAATAAGTCGTTTCCCCACTATGACGAACGGTTGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGGGCCAAGAGTTTTGCAGACGTTGGGTCAAACAATCCTGCTGGGTATGACGCATTTGTCGCTGACGCTACGCCGGATACGGACTTCCCGCCAATGTACAGTCAGGGATTGAACATGTCGCCTGATGATTTGATGGGAACAAGAATCGCTCGGGTCAGTGAGCGTAGGAATGTTTCAAGCGGGTCTAAGCAAAAACGTGCATGACATGTCGCAGATAGTGGGGACATAGTTAGCACTACGATTGAGTACGAAAATGAACAACTGAACCGCATTGCTGAATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGCCATCCCTGAGCTGACATTGATGGATAGGTGTCGCTTAATGTGTATACTTATGCTTAACGTCGATGACATAAAAGCTTTCCTTGACGTTCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAATCGATGATTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTCGAC

Coding sequence (CDS)

ATGGTAGCAATGTTCCTCCATATTATTGCGCACGACGTGAAAAACCGTGTCATTCAACGGGAGTTCATGCGGTCGGGTGAGACAATTTTCCGTCATTTTAACATGGTCTTGTTGGCCGTTATTCGGCTTCATGACGAGCTTTTGAAAAAACCACAACTAGTAAATAGAAAATTAATGAAACTAAGATGTTTGCGTTTGACATCTAGCATGACAAGTTCATCGAGACTACCTAAACACAGTTGGACTAAAGAAGAAGAGGCAGGCCTCGTTGAGTGCCTCGTGGAGTTGGTCAATGCTAGTGGGTGGAGGTCCGACAACGGAACCTTTTGCCCCGAGTACTTAAATCAACTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACGATCGATAGCCGAATCAAATTGATGAAGAGAATGTTCCATGCACTTGCGGAGATGCGTGGCCCAACGTGTAGTGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCACAGTGAAAGAAGTATTCGACGATTGGGTCAAGAGTCATCCGGTGGCGAAGGGCCTTCTGAATAAGTCGTTTCCCCACTATGACGAACGGTTGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGGGCCAAGAGTTTTGCAGACGTTGGGTCAAACAATCCTGCTGGGTATGACGCATTTGTCGCTGACGCTACGCCGGATACGGACTTCCCGCCAATGTACAGTCAGGGATTGAACATGTCGCCTGATGATTTGATGGGAACAAGAATCGCTCGGGTCAGTGAGCGTAGGAATGTTTCAAGCGGGTCTAAGCAAAAACGTGCATGA

Protein sequence

MVAMFLHIIAHDVKNRVIQREFMRSGETIFRHFNMVLLAVIRLHDELLKKPQLVNRKLMKLRCLRLTSSMTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGLLNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGLNMSPDDLMGTRIARVSERRNVSSGSKQKRA

Homology

[Close]

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr
Match: KAA0066570.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 411 bits (1056), Expect = 2.09e-142
Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN
Sbjct: 1   MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL
Sbjct: 121 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSS 272
           NMSPDDLMGTRIARV+    VS+
Sbjct: 181 NMSPDDLMGTRIARVNSGDIVST 203

[Close]

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr
Match: TYK15304.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 405 bits (1042), Expect = 2.83e-140
Identity = 194/203 (95.57%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN
Sbjct: 1   MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVT KEVFDDWVKSHPVAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDWVKSHPVAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNP GYDAFVADATPDTDFPPMYSQGL
Sbjct: 121 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPVGYDAFVADATPDTDFPPMYSQGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSS 272
           NMSPDDLMGTRI RV+    VS+
Sbjct: 181 NMSPDDLMGTRITRVNSGDIVST 203

[Close]

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 378 bits (970), Expect = 3.05e-129
Identity = 182/209 (87.08%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           M SSSRLPKH+WTKEEEA LVECLVELVNA GWRSDNGTF P YLNQL RMMAFKIPGCN
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV  KE+FDDWVKSHP AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSF HYDE  YVFGKDRATGGRA+SFAD+GSN+P GYDA  ADA PDTDFPPMYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSSGSKQKR 278
           NMSPDDLM TR ARVSERRNVSSGSK+KR
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKR 209

[Close]

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 376 bits (966), Expect = 1.24e-128
Identity = 180/209 (86.12%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           M SSSRLPKH+WTKEEEA LVECLVELVNA GWRSDNGTF P YLNQL RMMAFKIPGCN
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV  KE+FDDWVKSHP+AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSF HYDE  YVFGKDRATGGRA+SF D+GSN+PAGYDAF ADA PDT+F PMYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSSGSKQKR 278
           NMSPDDLM TR  RVSERRNVSSGSK+KR
Sbjct: 181 NMSPDDLMETRTVRVSERRNVSSGSKRKR 209

[Close]

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 387 bits (995), Expect = 6.81e-128
Identity = 235/460 (51.09%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MVAMFLHIIAHDVKNRVIQREFMRSGETIFRHFNMVLLAVIRLHDELLKKPQ-------- 60
           MVAMFLHI+AHDVKNRVIQREFMRSGETI RHFNMVLLAVIRLHDELLKKPQ        
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTD 155

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEG 215

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPS 275

Query: 181 ------------------------------------------------------LVNRKL 240
                                                                 L+NR++
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVEVQCHTILACCLLHNLINREM 335

Query: 241 MKLRCLRLTSSMTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLA 278
                     SMTSSSRLPKH+WTKEEEAGLVE    LVNA GWRSDNGTF P YLNQLA
Sbjct: 336 TNFDIEDNIVSMTSSSRLPKHTWTKEEEAGLVE----LVNAGGWRSDNGTFRPGYLNQLA 395

[Close]

BLAST of MELO3C032742.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7VHC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001420 PE=4 SV=1)

HSP 1 Score: 411 bits (1056), Expect = 1.01e-142
Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN
Sbjct: 1   MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL
Sbjct: 121 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSS 272
           NMSPDDLMGTRIARV+    VS+
Sbjct: 181 NMSPDDLMGTRIARVNSGDIVST 203

[Close]

BLAST of MELO3C032742.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CWJ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00110 PE=4 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 1.37e-140
Identity = 194/203 (95.57%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN
Sbjct: 1   MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVT KEVFDDWVKSHPVAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDWVKSHPVAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNP GYDAFVADATPDTDFPPMYSQGL
Sbjct: 121 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPVGYDAFVADATPDTDFPPMYSQGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSS 272
           NMSPDDLMGTRI RV+    VS+
Sbjct: 181 NMSPDDLMGTRITRVNSGDIVST 203

[Close]

BLAST of MELO3C032742.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 1.48e-129
Identity = 182/209 (87.08%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           M SSSRLPKH+WTKEEEA LVECLVELVNA GWRSDNGTF P YLNQL RMMAFKIPGCN
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV  KE+FDDWVKSHP AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSF HYDE  YVFGKDRATGGRA+SFAD+GSN+P GYDA  ADA PDTDFPPMYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSSGSKQKR 278
           NMSPDDLM TR ARVSERRNVSSGSK+KR
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKR 209

[Close]

BLAST of MELO3C032742.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 376 bits (966), Expect = 6.00e-129
Identity = 180/209 (86.12%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 70  MTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCN 129
           M SSSRLPKH+WTKEEEA LVECLVELVNA GWRSDNGTF P YLNQL RMMAFKIPGCN
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 130 IHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGL 189
           IHASTIDSRIKLMKRMFHALAEMRGP CSGFGWNDE+KCIV  KE+FDDWVKSHP+AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120

Query: 190 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPAGYDAFVADATPDTDFPPMYSQGL 249
           LNKSF HYDE  YVFGKDRATGGRA+SF D+GSN+PAGYDAF ADA PDT+F PMYS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180

Query: 250 NMSPDDLMGTRIARVSERRNVSSGSKQKR 278
           NMSPDDLM TR  RVSERRNVSSGSK+KR
Sbjct: 181 NMSPDDLMETRTVRVSERRNVSSGSKRKR 209

[Close]

BLAST of MELO3C032742.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 387 bits (995), Expect = 3.30e-128
Identity = 235/460 (51.09%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MVAMFLHIIAHDVKNRVIQREFMRSGETIFRHFNMVLLAVIRLHDELLKKPQ-------- 60
           MVAMFLHI+AHDVKNRVIQREFMRSGETI RHFNMVLLAVIRLHDELLKKPQ        
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTD 155

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEG 215

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPS 275

Query: 181 ------------------------------------------------------LVNRKL 240
                                                                 L+NR++
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVEVQCHTILACCLLHNLINREM 335

Query: 241 MKLRCLRLTSSMTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLA 278
                     SMTSSSRLPKH+WTKEEEAGLVE    LVNA GWRSDNGTF P YLNQLA
Sbjct: 336 TNFDIEDNIVSMTSSSRLPKHTWTKEEEAGLVE----LVNAGGWRSDNGTFRPGYLNQLA 395

[Close]

BLAST of MELO3C032742.jh1.t1 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-14
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 77  PKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCNIHASTID 136
           P + WT +E     + L+EL+    WR  +G      +         K  GCN +     
Sbjct: 13  PYNQWTPDE----TDVLIELIR-QNWRDSSGIIGKLTVESKLLPALNKRLGCNKNHKNYM 72

Query: 137 SRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKGLLNKSFPH 196
           SR+K +K ++ +  +++    SGFGW+ E K      EV+ D++K+HP  K +  +S  H
Sbjct: 73  SRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDH 132

Query: 197 YDERLYVFGKDRATGGRAKSFAD 220
           +++   +FG   ATG  A   +D
Sbjct: 133 FEDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of MELO3C032742.jh1.t1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 42/182 (23.08%), Postives = 71/182 (39.01%), Query Frame = 0


Query: 68  SSMTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMA--FKI 127
           S + S     K  WT E +   VE +V+ +   G ++ N      +++ L    A     
Sbjct: 159 SVVLSGKESSKTEWTLEMDQYFVEIMVDQI-GRGNKTGNAFSKQAWIDMLVLFNARFSGQ 218

Query: 128 PGCNIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPV 187
            G  +     +  +K  K M   L E       GF W++ +  I     V+D ++K HP+
Sbjct: 219 YGKRVLRHRYNKLLKYYKDMEAILKE------DGFSWDETRLMISADDAVWDSYIKDHPL 278

Query: 188 AKGLLNKSFPHYDERLYVF------GKDRATGGRAKSFADVGSNNPAGYDAFVADATPDT 242
           A+    KS P Y++   +F      G D    G A   ++  ++     D      TP  
Sbjct: 279 ARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKASQEQNSDRTRIFWTPPM 333

[Close]

BLAST of MELO3C032742.jh1.t1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 42/182 (23.08%), Postives = 71/182 (39.01%), Query Frame = 0


Query: 68  SSMTSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMA--FKI 127
           S + S     K  WT E +   VE +V+ +   G ++ N      +++ L    A     
Sbjct: 159 SVVLSGKESSKTEWTLEMDQYFVEIMVDQI-GRGNKTGNAFSKQAWIDMLVLFNARFSGQ 218

Query: 128 PGCNIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPV 187
            G  +     +  +K  K M   L E       GF W++ +  I     V+D ++K HP+
Sbjct: 219 YGKRVLRHRYNKLLKYYKDMEAILKE------DGFSWDETRLMISADDAVWDSYIKDHPL 278

Query: 188 AKGLLNKSFPHYDERLYVF------GKDRATGGRAKSFADVGSNNPAGYDAFVADATPDT 242
           A+    KS P Y++   +F      G D    G A   ++  ++     D      TP  
Sbjct: 279 ARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKASQEQNSDRTRIFWTPPM 333

[Close]

BLAST of MELO3C032742.jh1.t1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 18/77 (23.38%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 129 NIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKG 188
           N     + +R K ++R F+A+  +      GF W++E++ +     V+ D++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 189 LLNKSFPHYDERLYVFG 206
            + +  P+Y +   + G
Sbjct: 291 FMTRPIPYYKDLCVLCG 305

[Close]

BLAST of MELO3C032742.jh1.t1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 18/77 (23.38%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 129 NIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTVKEVFDDWVKSHPVAKG 188
           N     + +R K ++R F+A+  +      GF W++E++ +     V+ D++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 189 LLNKSFPHYDERLYVFG 206
            + +  P+Y +   + G
Sbjct: 291 FMTRPIPYYKDLCVLCG 305

The following BLAST results are available for this feature:

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066570.1	2.09e-142	97.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15304.1	2.83e-140	95.57	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05082.1	3.05e-129	87.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047075.1	1.24e-128	86.12	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	6.81e-128	51.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032742.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032742.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHC6	1.01e-142	97.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CWJ7	1.37e-140	95.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1M0	1.48e-129	87.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U098	6.00e-129	86.12	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWD8	3.30e-128	51.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C032742.jh1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	7.6e-14	28.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	2.2e-05	23.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	2.2e-05	23.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	2.2e-05	23.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.2e-05	23.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 80..177 e-value: 8.2E-8 score: 33.1
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 71..227
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 71..227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032742.jh1	MELO3C032742.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032742.jh1.t1.exon	MELO3C032742.jh1.t1.exon	exon
MELO3C032742.jh1.t1.exon	MELO3C032742.jh1.t1.exon_2	exon
MELO3C032742.jh1.t1.exon	MELO3C032742.jh1.t1.exon_3	exon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032742.jh1.t1.stop_codon	MELO3C032742.jh1.t1.stop_codon	stop_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032742.jh1.t1.cds	MELO3C032742.jh1.t1.cds	CDS
MELO3C032742.jh1.t1.cds	MELO3C032742.jh1.t1.cds_2	CDS
MELO3C032742.jh1.t1.cds	MELO3C032742.jh1.t1.cds_3	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032742.jh1.t1.start_codon	MELO3C032742.jh1.t1.start_codon	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032742.jh1.t1	MELO3C032742.jh1.t1-protein	polypeptide