MELO3C032523.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C032523.jh1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr07: 16978156 .. 16979081 (+)
Sequence length591
RNA-Seq ExpressionMELO3C032523.jh1.t1
SyntenyMELO3C032523.jh1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCAACAATTTCCTTCTTTTCACCTTGAGGACAAGGTGAATGTGGAACCGAGGGGTATTGTAAGGCCTCCCATATTACATACATACAAGAGGAAGGGTAGAATGGTAAACCAACATGACAATAATGATGAGGAAATAAAAAGAACATGATCGTGCGTGGTGGGCCCAGGGTGAGAGCATGTTGGAAAGGCCTATATATAGCACCTTTTGGGGATTGGGTAGGTAGGTTTTATTTTGGAAGACATTACCTTGAGTAGGGCGGTTGCTGTAGCCGAGGGTCACCCTAGAATAGGCTGCAAAGTTGGTATGTTTTCTACTGTTATCGTTTTGCTGCTTGCTATTGTTCTTTCTTCTTGTTAAGTCTTATGAATGTATCCTTGGCATTATAAATAAATAAGTACAGAGTGCCGTCTCTGTTTTTTTTGCCATTATAGTTGGTAAATTAGTGTTTATTTGTGGGTAACCTAACATAAGCACAGCATCGGCAAGTCAAGTGCCGAGGGTGGAGAGCAAAGTCGAAGGAGGAGATACATCGACGAAAGAAACTAGGAACGAAGAACAAATGAAGAAGATAGGAGTGATCGAAACAAATTCAAGAAGGTAGAGTTATTGATGTTTAGCGGCAAGAACTTCGATTCATGTTTTTTTTGGACCGAACGGAATTTCCAAAGTGCAAATTGACCGATTCTGCGAAATTAATCGATGCAGTAATAAGGTTTGATGGAACCACATTAGATTGGTCTCGGTCGAAGGAGGAACGCAATGCATTCAAGCATTGGTTGGAATTAAAGCAGAGGTTGTTAATTCGTTTCCGAGCAGTGAAGGAGGAACCTATCTGTAGACGCTTCTTAGCATCAAACAGGAAACAATCCTGGAAGGTCAACAAGAATTATTGGAGAGAACCGAAACGAAGACTCGAGTGA

mRNA sequence

ATGAACCAACAATTTCCTTCTTTTCACCTTGAGGACAAGGTGAATGTGGAACCGAGGGGTATTGTAAGGCCTCCCATATTACATACATACAAGAGGAAGGGTAGAATGGTAGGTTTTATTTTGGAAGACATTACCTTGAGTAGGGCGGTTGCTGTAGCCGAGGGTCACCCTAGAATAGGCTGCAAAGTTGCATCGGCAAGTCAAGTGCCGAGGGTGGAGAGCAAAGTCGAAGGAGGAGATACATCGACGAAAGAAACTAGGAACGAAGAACAAATGAAGAAGATAGGACGGCAAGAACTTCGATTCATGTTTTTTTTGGACCGAACGGAATTTCCAAAGTGCAAATTGACCGATTCTGCGAAATTAATCGATGCAGTAATAAGGTTTGATGGAACCACATTAGATTGGTCTCGGTCGAAGGAGGAACGCAATGCATTCAAGCATTGGTTGGAATTAAAGCAGAGGTTGTTAATTCGTTTCCGAGCAGTGAAGGAGGAACCTATCTGTAGACGCTTCTTAGCATCAAACAGGAAACAATCCTGGAAGGTCAACAAGAATTATTGGAGAGAACCGAAACGAAGACTCGAGTGA

Coding sequence (CDS)

ATGAACCAACAATTTCCTTCTTTTCACCTTGAGGACAAGGTGAATGTGGAACCGAGGGGTATTGTAAGGCCTCCCATATTACATACATACAAGAGGAAGGGTAGAATGGTAGGTTTTATTTTGGAAGACATTACCTTGAGTAGGGCGGTTGCTGTAGCCGAGGGTCACCCTAGAATAGGCTGCAAAGTTGCATCGGCAAGTCAAGTGCCGAGGGTGGAGAGCAAAGTCGAAGGAGGAGATACATCGACGAAAGAAACTAGGAACGAAGAACAAATGAAGAAGATAGGACGGCAAGAACTTCGATTCATGTTTTTTTTGGACCGAACGGAATTTCCAAAGTGCAAATTGACCGATTCTGCGAAATTAATCGATGCAGTAATAAGGTTTGATGGAACCACATTAGATTGGTCTCGGTCGAAGGAGGAACGCAATGCATTCAAGCATTGGTTGGAATTAAAGCAGAGGTTGTTAATTCGTTTCCGAGCAGTGAAGGAGGAACCTATCTGTAGACGCTTCTTAGCATCAAACAGGAAACAATCCTGGAAGGTCAACAAGAATTATTGGAGAGAACCGAAACGAAGACTCGAGTGA

Protein sequence

MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKRKGRMVGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKIGRQELRFMFFLDRTEFPKCKLTDSAKLIDAVIRFDGTTLDWSRSKEERNAFKHWLELKQRLLIRFRAVKEEPICRRFLASNRKQSWKVNKNYWREPKRRLE
Homology
[Close]
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match: TYK14722.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 4.15e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 36  MVGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 95
           ++GFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI
Sbjct: 804 ILGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 863

[Close]
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match: KAA0061367.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 4.15e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 36  MVGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 95
           ++GFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI
Sbjct: 805 ILGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 864

[Close]
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match: TYK01856.1 (LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 4.67e-23
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 0 

Query: 64  ASASQVPRVESKVEGGDTSTKETRNEEQMKKIGRQELRFMFFLDRTEFPKCKLTDSAKLI 123
           ASASQ+PR+++ VEGG+T+ KETR+EEQ KKIG +E       DR +F K +L       
Sbjct: 90  ASASQIPRMKNTVEGGNTTAKETRDEEQTKKIGIEE----DMSDRNKFKKVELP------ 149

Query: 124 DAVIRFDGTTLDWSRSKEERNAFKHWLELKQRLLIRFRAVKEEPICRRFLAS 175
               RFDGTTLDWSRSK+E +AFK WL LKQRLL+ F+ V+EE    RFLA+
Sbjct: 150 ----RFDGTTLDWSRSKDEHDAFKDWLRLKQRLLLTFQLVREELSRGRFLAN 187

[Close]
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match: KAA0052291.1 (LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 4.67e-23
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 0 

Query: 64  ASASQVPRVESKVEGGDTSTKETRNEEQMKKIGRQELRFMFFLDRTEFPKCKLTDSAKLI 123
           ASASQ+PR+++ VEGG+T+ KETR+EEQ KKIG +E       DR +F K +L       
Sbjct: 90  ASASQIPRMKNTVEGGNTTAKETRDEEQTKKIGIEE----DMSDRNKFKKVELP------ 149

Query: 124 DAVIRFDGTTLDWSRSKEERNAFKHWLELKQRLLIRFRAVKEEPICRRFLAS 175
               RFDGTTLDWSRSK+E +AFK WL LKQRLL+ F+ V+EE    RFLA+
Sbjct: 150 ----RFDGTTLDWSRSKDEHDAFKDWLRLKQRLLLTFQLVREELSRGRFLAN 187

[Close]
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match: KAA0041185.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.32e-18
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1   MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKRKGRMVGFILEDITLSRAVAVAEGHPRIG 60
           MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKR+ R V F  ++ TL RA A AEG+PR+G
Sbjct: 761 MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKRRDRKVLFWDKE-TLVRAAAAAEGYPRVG 820

Query: 61  CKV 63
            K+
Sbjct: 821 YKL 822

[Close]
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CTG3 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00540 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 2.01e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 36  MVGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 95
           ++GFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI
Sbjct: 804 ILGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 863

[Close]
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V3B9 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00530 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 2.01e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 36  MVGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 95
           ++GFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI
Sbjct: 805 ILGFILEDITLSRAVAVAEGHPRIGCKVASASQVPRVESKVEGGDTSTKETRNEEQMKKI 864

[Close]
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BUF4 (LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001090 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 2.26e-23
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 0 

Query: 64  ASASQVPRVESKVEGGDTSTKETRNEEQMKKIGRQELRFMFFLDRTEFPKCKLTDSAKLI 123
           ASASQ+PR+++ VEGG+T+ KETR+EEQ KKIG +E       DR +F K +L       
Sbjct: 90  ASASQIPRMKNTVEGGNTTAKETRDEEQTKKIGIEE----DMSDRNKFKKVELP------ 149

Query: 124 DAVIRFDGTTLDWSRSKEERNAFKHWLELKQRLLIRFRAVKEEPICRRFLAS 175
               RFDGTTLDWSRSK+E +AFK WL LKQRLL+ F+ V+EE    RFLA+
Sbjct: 150 ----RFDGTTLDWSRSKDEHDAFKDWLRLKQRLLLTFQLVREELSRGRFLAN 187

[Close]
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UFJ8 (LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001220 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 2.26e-23
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 0 

Query: 64  ASASQVPRVESKVEGGDTSTKETRNEEQMKKIGRQELRFMFFLDRTEFPKCKLTDSAKLI 123
           ASASQ+PR+++ VEGG+T+ KETR+EEQ KKIG +E       DR +F K +L       
Sbjct: 90  ASASQIPRMKNTVEGGNTTAKETRDEEQTKKIGIEE----DMSDRNKFKKVELP------ 149

Query: 124 DAVIRFDGTTLDWSRSKEERNAFKHWLELKQRLLIRFRAVKEEPICRRFLAS 175
               RFDGTTLDWSRSK+E +AFK WL LKQRLL+ F+ V+EE    RFLA+
Sbjct: 150 ----RFDGTTLDWSRSKDEHDAFKDWLRLKQRLLLTFQLVREELSRGRFLAN 187

[Close]
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TIE4 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001300 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.38e-19
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1   MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKRKGRMVGFILEDITLSRAVAVAEGHPRIG 60
           MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKR+ R V F  ++ TL RA A AEG+PR+G
Sbjct: 761 MNQQFPSFHLEDKVNVEPRGIVRPPILHTYKRRDRKVLFWDKE-TLVRAAAAAEGYPRVG 820

Query: 61  CKV 63
            K+
Sbjct: 821 YKL 822

The following BLAST results are available for this feature:
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14722.14.15e-2696.72Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0061367.14.15e-2696.72Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK01856.14.67e-2355.36LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 [Cucumis melo... [more]
KAA0052291.14.67e-2355.36LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 [Cucumis melo... [more]
KAA0041185.11.32e-1874.60putative retroelement pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of MELO3C032523.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CTG32.01e-2696.72Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V3B92.01e-2696.72Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BUF42.26e-2355.36LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 OS=Cucumis me... [more]
A0A5A7UFJ82.26e-2355.36LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X2 OS=Cucumis me... [more]
A0A5A7TIE46.38e-1974.60Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of MELO3C032523.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C032523.jh1MELO3C032523.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032523.jh1.t1.exonMELO3C032523.jh1.t1.exonexon
MELO3C032523.jh1.t1.exonMELO3C032523.jh1.t1.exon_2exon
MELO3C032523.jh1.t1.exonMELO3C032523.jh1.t1.exon_3exon
MELO3C032523.jh1.t1.exonMELO3C032523.jh1.t1.exon_4exon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032523.jh1.t1.start_codonMELO3C032523.jh1.t1.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032523.jh1.t1.cdsMELO3C032523.jh1.t1.cdsCDS
MELO3C032523.jh1.t1.cdsMELO3C032523.jh1.t1.cds_2CDS
MELO3C032523.jh1.t1.cdsMELO3C032523.jh1.t1.cds_3CDS
MELO3C032523.jh1.t1.cdsMELO3C032523.jh1.t1.cds_4CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032523.jh1.t1.stop_codonMELO3C032523.jh1.t1.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C032523.jh1.t1MELO3C032523.jh1.t1-proteinpolypeptide