MELO3C032224.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C032224.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTransposase
Locationchr06: 28086095 .. 28087003 (-)
Sequence length362
RNA-Seq ExpressionMELO3C032224.1
SyntenyMELO3C032224.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAATTTTGCCTTCAAGTCATTCGATCCTTGAATATACAATGTCTCGAGATGCCTCGAGATGAAAGAATTCTTACTTCAGTTATTGGATCTTGAGTCTTAGTGGCATCGAGATTGTCCGGGACGAAAGAATTCTGCCTTTATTTTAATTGATCTTGGGCATACATTACCCCAAGATGCCATGAGACGAAAGACTTTTGCCTTTAGTTATTTGATCTTCGGTCTTAATTGCGTCGTGATGGCTCAAGATCAACAAATGACAAAGAAGATATAACAATCTATATATAATTGTTGTTGAAGTATGTTGTTGATCATGAAGTGTTGTTGAAGTGTGTTGTTGATCATGAAGTGTTGCTGAAGTGTGTATGTAATTTACCTAAGTTTGTGGGCTAAATTTTGCTAAGCTTAGAAGTTATTATTCTTGAAGTGTTTATGTGCTCTATGTTGTTGAAGTGTGTTGTTGATCATGAAGTGTTGTTGAAATGTGTATGTAATTTAGCTTAGTTTGTGGGATGAATTTAGCTAAGCTTAGAAGTTATTATTCTTGAAGTGTGTATGTGCTCTATGTTGTTGAAGTGTGTTGTTCATCATGGAGTGAATGTGATGTGTTTATGTCAGTGAATGTGTTGTCTTGTTCAATCATTTTTTTTCCTTTTCTTATCTTATTAGGTTTTGCCACAATCCATTGGAGCAATGAAGCCACATTTACGCCAATTTATTGATGTTAGGCTTTTTTGTAGGTTTGGTAGGAAATTTTTTTGTTTACATGTAGTTATTTAAATAGTTTGTTCGTACCAAAACACATTTGTACCAACAATTAAAGCAATATTACAAAGTGTGTTTCTTTCTATTAAAGCGTTCACCGTTTTTCCATATGTGATTGTATTGGTCTGTAATGGTATGTGT

mRNA sequence

ATGAAAGAATTTTGCCTTCAAGTCATTCGATCCTTGAATATACAATGTCTCGAGATGCCTCGAGATGAAAGAATTCTTACTTCATATGTTGTTGATCATGAAGTGTTGTTGAAGTGTGTTGTTGATCATGAAGTGTTGCTGAAGTGTGTTTTGCCACAATCCATTGGAGCAATGAAGCCACATTTACGCCAATTTATTGATGTAGGAAATTTTTTTGTTTACATGTAGTTATTTAAATAGTTTGTTCGTACCAAAACACATTTGTACCAACAATTAAAGCAATATTACAAAGTGTGTTTCTTTCTATTAAAGCGTTCACCGTTTTTCCATATGTGATTGTATTGGTCTGTAATGGTATGTGT

Coding sequence (CDS)

ATGAAAGAATTTTGCCTTCAAGTCATTCGATCCTTGAATATACAATGTCTCGAGATGCCTCGAGATGAAAGAATTCTTACTTCATATGTTGTTGATCATGAAGTGTTGTTGAAGTGTGTTGTTGATCATGAAGTGTTGCTGAAGTGTGTTTTGCCACAATCCATTGGAGCAATGAAGCCACATTTACGCCAATTTATTGATGTAGGAAATTTTTTTGTTTACATGTAG

Protein sequence

MKEFCLQVIRSLNIQCLEMPRDERILTSYVVDHEVLLKCVVDHEVLLKCVLPQSIGAMKPHLRQFIDVGNFFVYM
Homology
[Close]
BLAST of MELO3C032224.1 vs. NCBI nr
Match: KAA0061183.1 (transposase [Cucumis melo var. makuwa] >TYK06235.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 5   CLQVIRSLNIQCLEMPRDERILTSYVVDHEVLLKCVVDHEVLLKCVLPQSIGAMKPHLRQ 64
           C  V   + ++C+    D+++L   VVD+EVLLKC  DHEVLLKCVLPQSIGAMKP+LRQ
Sbjct: 862 CCVVHHEVLLKCVV---DKKVLLKCVVDYEVLLKCFADHEVLLKCVLPQSIGAMKPYLRQ 921

Query: 65  FID 68
           FID
Sbjct: 922 FID 921

[Close]
BLAST of MELO3C032224.1 vs. NCBI nr
Match: TYK04227.1 (uncharacterized protein E5676_scaffold24967G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-04
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 22  DERILTSYVVDHEVLLKCVVDHEVLLKCVLPQSIGAM 59
           D ++L   VVDHEVLLKCVVDHEVLLKCV+   +  M
Sbjct: 439 DHKVLLKCVVDHEVLLKCVVDHEVLLKCVVDHDVNVM 475

[Close]
BLAST of MELO3C032224.1 vs. ExPASy TrEMBL
Match: A0A5D3C4C6 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00060 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 5   CLQVIRSLNIQCLEMPRDERILTSYVVDHEVLLKCVVDHEVLLKCVLPQSIGAMKPHLRQ 64
           C  V   + ++C+    D+++L   VVD+EVLLKC  DHEVLLKCVLPQSIGAMKP+LRQ
Sbjct: 862 CCVVHHEVLLKCVV---DKKVLLKCVVDYEVLLKCFADHEVLLKCVLPQSIGAMKPYLRQ 921

Query: 65  FID 68
           FID
Sbjct: 922 FID 921

[Close]
BLAST of MELO3C032224.1 vs. ExPASy TrEMBL
Match: A0A5D3BXI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00360 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 22  DERILTSYVVDHEVLLKCVVDHEVLLKCVLPQSIGAM 59
           D ++L   VVDHEVLLKCVVDHEVLLKCV+   +  M
Sbjct: 439 DHKVLLKCVVDHEVLLKCVVDHEVLLKCVVDHDVNVM 475

The following BLAST results are available for this feature:
BLAST of MELO3C032224.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061183.12.6e-1161.90transposase [Cucumis melo var. makuwa] >TYK06235.1 transposase [Cucumis melo var... [more]
TYK04227.15.3e-0464.86uncharacterized protein E5676_scaffold24967G00360 [Cucumis melo var. makuwa][more]
BLAST of MELO3C032224.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032224.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C4C61.3e-1161.90Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00060 PE... [more]
A0A5D3BXI32.5e-0464.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C032224.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C032224MELO3C032224gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032224.1:exon:186936MELO3C032224.1:exon:186936exon
MELO3C032224.1:exon:186935MELO3C032224.1:exon:186935exon
MELO3C032224.1:exon:186934MELO3C032224.1:exon:186934exon
MELO3C032224.1:exon:186933MELO3C032224.1:exon:186933exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032224.1:three_prime_utrMELO3C032224.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C032224.1:cdsMELO3C032224.1:cdsCDS
MELO3C032224.1:cdsMELO3C032224.1:cds_2CDS
MELO3C032224.1:cdsMELO3C032224.1:cds_3CDS
MELO3C032224.1:cdsMELO3C032224.1:cds_4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C032224.1MELO3C032224.1-proteinpolypeptide