MELO3C032185.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C032185.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	exosome complex exonuclease RRP44 homolog A
Location	chr06: 24977825 .. 24978974 (+)
Sequence length	606
RNA-Seq Expression	MELO3C032185.1
Synteny	MELO3C032185.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATCACACCTCTATTTATAGGCATGAATTCCTTGGAGCCCAAGCCAAAAAGAGGTTTCTAGAGTTCTACTATTCTAGATATTTATTTCTTATCCTTATCTAAAATAATTCTCTAGAATTCTTTATCCTAAAAAATCTAAGATATTTCTAGTTTTCTTTTTAGTTTACATAATTCTAGAATTTTAATATACTCTTTTAATATCTCTAGAATATTCTAGTTAGTGTTGCTATGTACTTTAACATATCCCACTTGGACAGTATTTATAGTTGATTCGTATTCATGCTAACATTCTAGTTCATCATTTACAGTAACTGCCAAAGTATTCTGTATGCGTTTGTTTTCATAACCCATCATAAGCTAATGACTGAGATTTAGCATAAATGCTTGCTTAAATTGTGTTGACGATTATCTCTAACATTGTGATTCAGCCATTCCAGTGGCTGCTCAGTGGTATCAGAATCATCTTGGTGGTGCTACTCGTGTTCTACTCATAACCAATGAAAGAGAGAATAGGAGAAAGGCTATTGAAGAGGGAATTTGTGCAGAGACAATTATGTTAGATGTTTATTTATTTTTAGCTTTCCTTAAAGCCTCTTGGTGTCTACCATATGGCGTGCTTATAATGATTATGCTTTCTCTCTTGCTCTCAAGTTTTTTATGTCATATGCTTAGCTAACTTGGTTAATTTGTTTGGTGTTTACAGTTGAATCTTATGTTAGATCATTGGGGCAAACTCATTTACTTGATCTGTTAGTGCAAAGTGCAAATGAAGATGCAAATATGGAGGATGTTGAAGATTTGAGGCCATCGAAGAGAAAGGTTCTTTACTCTGAGGTATTATAATGAATATGCTAAACTATATTTATTTCGGGAAAAATACTAGTGTCTTATAAGGATTCTGGTTTTCAACATATCCTACTCTTCTTTCTTCAAGCATAAGCCCATGTCAGAAATTACTTCGTGGTATATATCATCAAGGCAAGCTCCGTGTTAATCGATACAACCCATTTGAAGCGTATGTTGGAGGTGAGAGTATTGGCGATGAAATTATTATTTATGGGCGTACCAACATGAATCGGGCTTTTGATGGTGATGTTGTGGCAGTTGAACTTTTGTCACGGCATGAAGAGAAATCTCTGACATAG

mRNA sequence

ATGAGGATCACACCTCTATTTATAGGCATGAATTCCTTGGAGCCCAAGCCAAAAAGAGCCATTCCAGTGGCTGCTCAGTGGTATCAGAATCATCTTGGTGGTGCTACTCGTGTTCTACTCATAACCAATGAAAGAGAGAATAGGAGAAAGGCTATTGAAGAGGGAATTTGTGCAGAGACAATTATGTTAGATGTTTATTTATTTTTAGCTTTCCTTAAAGCCTCTTGGTGTCTACCATATGGCGTGCTTATAATGATTATGCTTTCTCTCTTGCTCTCAATTGAATCTTATGTTAGATCATTGGGGCAAACTCATTTACTTGATCTGTTAGTGCAAAGTGCAAATGAAGATGCAAATATGGAGGATGTTGAAGATTTGAGGCCATCGAAGAGAAAGGTTCTTTACTCTGAGAAATTACTTCGTGGTATATATCATCAAGGCAAGCTCCGTGTTAATCGATACAACCCATTTGAAGCGTATGTTGGAGGTGAGAGTATTGGCGATGAAATTATTATTTATGGGCGTACCAACATGAATCGGGCTTTTGATGGTGATGTTGTGGCAGTTGAACTTTTGTCACGGCATGAAGAGAAATCTCTGACATAG

Coding sequence (CDS)

ATGAGGATCACACCTCTATTTATAGGCATGAATTCCTTGGAGCCCAAGCCAAAAAGAGCCATTCCAGTGGCTGCTCAGTGGTATCAGAATCATCTTGGTGGTGCTACTCGTGTTCTACTCATAACCAATGAAAGAGAGAATAGGAGAAAGGCTATTGAAGAGGGAATTTGTGCAGAGACAATTATGTTAGATGTTTATTTATTTTTAGCTTTCCTTAAAGCCTCTTGGTGTCTACCATATGGCGTGCTTATAATGATTATGCTTTCTCTCTTGCTCTCAATTGAATCTTATGTTAGATCATTGGGGCAAACTCATTTACTTGATCTGTTAGTGCAAAGTGCAAATGAAGATGCAAATATGGAGGATGTTGAAGATTTGAGGCCATCGAAGAGAAAGGTTCTTTACTCTGAGAAATTACTTCGTGGTATATATCATCAAGGCAAGCTCCGTGTTAATCGATACAACCCATTTGAAGCGTATGTTGGAGGTGAGAGTATTGGCGATGAAATTATTATTTATGGGCGTACCAACATGAATCGGGCTTTTGATGGTGATGTTGTGGCAGTTGAACTTTTGTCACGGCATGAAGAGAAATCTCTGACATAG

Protein sequence

MRITPLFIGMNSLEPKPKRAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCLPYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEKLLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAVELLSRHEEKSLT

Homology

[Close]

BLAST of MELO3C032185.1 vs. NCBI nr
Match: XP_038887941.1 (exosome complex exonuclease RRP44 homolog A [Benincasa hispida])

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-64
Identity = 144/195 (73.85%), Postives = 146/195 (74.87%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNHLGGATRVLLI+N+RENRRKAIEEGICAET                  
Sbjct: 134 RAIRVAAQWYQNHLGGATRVLLISNDRENRRKAIEEGICAET------------------ 193

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSE 
Sbjct: 194 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEH 253

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 254 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 295

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 314 ELLSRDQWHEEKSLT 295

[Close]

BLAST of MELO3C032185.1 vs. NCBI nr
Match: XP_008454914.1 (PREDICTED: exosome complex exonuclease RRP44 homolog A [Cucumis melo] >KAA0031280.1 exosome complex exonuclease RRP44-like protein A [Cucumis melo var. makuwa] >TYK06732.1 exosome complex exonuclease RRP44-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-64
Identity = 144/195 (73.85%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAA WYQNHLGGATRVLLITN+RENRRKAIEEGICAET                  
Sbjct: 135 RAIRVAALWYQNHLGGATRVLLITNDRENRRKAIEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSE 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. NCBI nr
Match: XP_023554295.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-63
Identity = 141/195 (72.31%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNH+GGATRVLLITN+RENRRKA+EEGICAET                  
Sbjct: 135 RAIRVAAQWYQNHIGGATRVLLITNDRENRRKAVEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANME+VEDLRPSKRKVLY E 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEEVEDLRPSKRKVLYFEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. NCBI nr
Match: XP_022972336.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima])

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-63
Identity = 140/195 (71.79%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNH+GGATRVLLITN+RENRRKA+EEGICAET                  
Sbjct: 135 RAIRVAAQWYQNHIGGATRVLLITNDRENRRKAVEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANME+VED+RPSKRKVLY E 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEEVEDMRPSKRKVLYFEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. NCBI nr
Match: XP_011658916.2 (exosome complex exonuclease RRP44 homolog A [Cucumis sativus] >KAE8645869.1 hypothetical protein Csa_017207 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-63
Identity = 143/195 (73.33%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNHLGGATRVLLITN+RENRRKAIEEGI AET                  
Sbjct: 135 RAIRVAAQWYQNHLGGATRVLLITNDRENRRKAIEEGIGAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYV+SLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSE 
Sbjct: 195 ---------------IESYVKSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. ExPASy Swiss-Prot
Match: Q9SHL7 (Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=RRP44A PE=2 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-49
Identity = 109/195 (55.90%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VA  WYQ HLG  ++VLL+TN+REN+RKA EEGI AET                  
Sbjct: 133 RAIRVATLWYQKHLGDTSQVLLVTNDRENKRKATEEGISAET------------------ 192

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IE+YV+SLGQ  LLDLL Q  NED  MED +D RPSKRK++Y E 
Sbjct: 193 ---------------IEAYVKSLGQPELLDLLAQPTNEDITMEDADDSRPSKRKLIYQEH 252

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNR+NP+EAYVG ESIG+EIIIYGR+NMNRAFDGD+VAV
Sbjct: 253 KPMSEITAGLHRGIYHQGKLRVNRFNPYEAYVGSESIGEEIIIYGRSNMNRAFDGDIVAV 294

Query: 199 ELLSR---HEEKSLT 202
           ELL R    +EK+L+
Sbjct: 313 ELLPRDQWQDEKALS 294

[Close]

BLAST of MELO3C032185.1 vs. ExPASy Swiss-Prot
Match: Q9CSH3 (Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 67/196 (34.18%), Postives = 92/196 (46.94%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHL-----GGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLK 78
           RAI VAA+WY  HL         +V+LITN+R+N+ KA++EGI A T             
Sbjct: 147 RAIRVAAKWYNEHLKRVAADSQLQVILITNDRKNKEKAVQEGIPAFT------------- 206

Query: 79  ASWCLPYGVLIMIMLSLLLSIESYVRSL-GQTHLLDLLVQSANEDANMEDVEDLRPSKRK 138
                                E YV+SL     L+D L   ++E   M ++E       K
Sbjct: 207 --------------------CEEYVKSLTANPELIDRLAYLSDE---MNEIE-----SGK 266

Query: 139 VLYSE-----KLLRGI----YHQGKLRVNRYNPFEAYV---GGESIGDEIIIYGRTNMNR 197
           +++SE     KL +GI    Y QG  R +R N  EA V   G +    EI+I G  ++NR
Sbjct: 267 IIFSEHLPLSKLQQGIKSGSYLQGTFRASRENYLEATVWIHGDKEEEKEILIQGIKHLNR 301

[Close]

BLAST of MELO3C032185.1 vs. ExPASy Swiss-Prot
Match: Q9Y2L1 (Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-12
Identity = 66/196 (33.67%), Postives = 86/196 (43.88%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHL-----GGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLK 78
           RAI VAA+WY  HL         +V+ ITN+R N+ KAIEEGI A T             
Sbjct: 147 RAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEEGIPAFT------------- 206

Query: 79  ASWCLPYGVLIMIMLSLLLSIESYVRSL-GQTHLLDLLVQSANEDANMEDVEDLRPSKRK 138
                                E YV+SL     L+D L   + E   +E          K
Sbjct: 207 --------------------CEEYVKSLTANPELIDRLACLSEEGNEIE--------SGK 266

Query: 139 VLYSE-----KLLRGI----YHQGKLRVNRYNPFEAYV---GGESIGDEIIIYGRTNMNR 197
           +++SE     KL +GI    Y QG  R +R N  EA V   G      EII+ G  ++NR
Sbjct: 267 IIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNR 301

[Close]

BLAST of MELO3C032185.1 vs. ExPASy Swiss-Prot
Match: P37202 (Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dis3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-10
Identity = 49/189 (25.93%), Postives = 88/189 (46.56%), Query Frame = 0


Query: 12  SLEPKPKRAIPVAAQWYQNHLGG-ATRVLLITNERENRRKAIEEGICAETIMLDVYLFLA 71
           S   +  RAI  AA W+ +HL     +++L+T++REN R A E+GI   T+   V     
Sbjct: 160 SANDRNDRAIRNAASWFASHLASLGIKIVLLTDDRENARLAAEQGIQVSTLKDYVQY--- 219

Query: 72  FLKASWCLPYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSK 131
                  LP   +++ M+S                + D +      ++  ++V +L  S 
Sbjct: 220 -------LPDSEILLDMVSA---------------IADAIASKEQVESGTKNVYELHWSM 279

Query: 132 RKVLYSEKLLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAVE 191
            ++L   K   G  H+G + ++ YN  E  V        +++ GR N+NRA  GD+V ++
Sbjct: 280 SRLLACIK--NGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQ 321

Query: 192 LLSRHEEKS 200
           +L + + K+
Sbjct: 340 ILPQDQWKT 321

[Close]

BLAST of MELO3C032185.1 vs. ExPASy Swiss-Prot
Match: Q08162 (Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DIS3 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-07
Identity = 50/192 (26.04%), Postives = 83/192 (43.23%), Query Frame = 0


Query: 12  SLEPKPKRAIPVAAQWYQNHLGG-ATRVLLITNERENRR---KAIEEGICAETIMLDVYL 71
           ++  +  RAI    QWY  HL      V+L+TN+R NR    K +E  I  ++++     
Sbjct: 165 TINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQ---- 224

Query: 72  FLAFLKASWCLPYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLR 131
                               + LL + +    S+ Q   +D   +    D   +      
Sbjct: 225 -------------------YIELLPNADDIRDSIPQ---MDSFDKDLERDTFSDFTFPEY 284

Query: 132 PSKRKVLYSEKLLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVV 191
            S  +V+    L  G+ +QG ++++ YN  E  V        ++I G+ N+NRAF+GD V
Sbjct: 285 YSTARVMGG--LKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQV 328

Query: 192 AVELLSRHEEKS 200
            VELL + E K+
Sbjct: 345 IVELLPQSEWKA 328

[Close]

BLAST of MELO3C032185.1 vs. ExPASy TrEMBL
Match: A0A5A7SKL0 (Exosome complex exonuclease RRP44-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00330 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.2e-64
Identity = 144/195 (73.85%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAA WYQNHLGGATRVLLITN+RENRRKAIEEGICAET                  
Sbjct: 135 RAIRVAALWYQNHLGGATRVLLITNDRENRRKAIEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSE 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. ExPASy TrEMBL
Match: A0A1S3BZS3 (exosome complex exonuclease RRP44 homolog A OS=Cucumis melo OX=3656 GN=LOC103495216 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.2e-64
Identity = 144/195 (73.85%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAA WYQNHLGGATRVLLITN+RENRRKAIEEGICAET                  
Sbjct: 135 RAIRVAALWYQNHLGGATRVLLITNDRENRRKAIEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSE 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. ExPASy TrEMBL
Match: A0A6J1I5P7 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita maxima OX=3661 GN=LOC111470918 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.0e-63
Identity = 140/195 (71.79%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNH+GGATRVLLITN+RENRRKA+EEGICAET                  
Sbjct: 135 RAIRVAAQWYQNHIGGATRVLLITNDRENRRKAVEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANEDANME+VED+RPSKRKVLY E 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDANMEEVEDMRPSKRKVLYFEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. ExPASy TrEMBL
Match: A0A0A0K821 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074840 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.0e-63
Identity = 143/195 (73.33%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNHLGGATRVLLITN+RENRRKAIEEGI AET                  
Sbjct: 135 RAIRVAAQWYQNHLGGATRVLLITNDRENRRKAIEEGIGAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYV+SLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSE 
Sbjct: 195 ---------------IESYVKSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. ExPASy TrEMBL
Match: A0A6J1GLL6 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 GN=LOC111455103 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.9e-63
Identity = 139/195 (71.28%), Postives = 144/195 (73.85%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VAAQWYQNH+GGATRVLLITN+RENRRKA+EEGICAET                  
Sbjct: 135 RAIRVAAQWYQNHIGGATRVLLITNDRENRRKAVEEGICAET------------------ 194

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IESYVRSLGQTHLLDLLVQSANED NME+VED+RPSKRKVLY E 
Sbjct: 195 ---------------IESYVRSLGQTHLLDLLVQSANEDTNMEEVEDMRPSKRKVLYFEH 254

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNRYNPFEAYVG ESIGDEIIIYGRTNMNRAFDGDVVAV
Sbjct: 255 KPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAV 296

Query: 199 ELLSR---HEEKSLT 202
           ELLSR   HEEKSLT
Sbjct: 315 ELLSRDQWHEEKSLT 296

[Close]

BLAST of MELO3C032185.1 vs. TAIR 10
Match: AT2G17510.1 (ribonuclease II family protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-50
Identity = 109/195 (55.90%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VA  WYQ HLG  ++VLL+TN+REN+RKA EEGI AET                  
Sbjct: 133 RAIRVATLWYQKHLGDTSQVLLVTNDRENKRKATEEGISAET------------------ 192

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IE+YV+SLGQ  LLDLL Q  NED  MED +D RPSKRK++Y E 
Sbjct: 193 ---------------IEAYVKSLGQPELLDLLAQPTNEDITMEDADDSRPSKRKLIYQEH 252

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNR+NP+EAYVG ESIG+EIIIYGR+NMNRAFDGD+VAV
Sbjct: 253 KPMSEITAGLHRGIYHQGKLRVNRFNPYEAYVGSESIGEEIIIYGRSNMNRAFDGDIVAV 294

Query: 199 ELLSR---HEEKSLT 202
           ELL R    +EK+L+
Sbjct: 313 ELLPRDQWQDEKALS 294

[Close]

BLAST of MELO3C032185.1 vs. TAIR 10
Match: AT2G17510.2 (ribonuclease II family protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-50
Identity = 109/195 (55.90%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 19  RAIPVAAQWYQNHLGGATRVLLITNERENRRKAIEEGICAETIMLDVYLFLAFLKASWCL 78
           RAI VA  WYQ HLG  ++VLL+TN+REN+RKA EEGI AET                  
Sbjct: 178 RAIRVATLWYQKHLGDTSQVLLVTNDRENKRKATEEGISAET------------------ 237

Query: 79  PYGVLIMIMLSLLLSIESYVRSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEK 138
                          IE+YV+SLGQ  LLDLL Q  NED  MED +D RPSKRK++Y E 
Sbjct: 238 ---------------IEAYVKSLGQPELLDLLAQPTNEDITMEDADDSRPSKRKLIYQEH 297

Query: 139 ---------LLRGIYHQGKLRVNRYNPFEAYVGGESIGDEIIIYGRTNMNRAFDGDVVAV 198
                    L RGIYHQGKLRVNR+NP+EAYVG ESIG+EIIIYGR+NMNRAFDGD+VAV
Sbjct: 298 KPMSEITAGLHRGIYHQGKLRVNRFNPYEAYVGSESIGEEIIIYGRSNMNRAFDGDIVAV 339

Query: 199 ELLSR---HEEKSLT 202
           ELL R    +EK+L+
Sbjct: 358 ELLPRDQWQDEKALS 339

The following BLAST results are available for this feature:

BLAST of MELO3C032185.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887941.1	1.1e-64	73.85	exosome complex exonuclease RRP44 homolog A [Benincasa hispida]	[more]
XP_008454914.1	2.4e-64	73.85	PREDICTED: exosome complex exonuclease RRP44 homolog A [Cucumis melo] >KAA003128...	[more]
XP_023554295.1	1.2e-63	72.31	exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972336.1	2.1e-63	71.79	exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima]	[more]
XP_011658916.2	2.1e-63	73.33	exosome complex exonuclease RRP44 homolog A [Cucumis sativus] >KAE8645869.1 hypo...	[more]

BLAST of MELO3C032185.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHL7	1.8e-49	55.90	Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9CSH3	1.3e-12	34.18	Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4	[more]
Q9Y2L1	5.0e-12	33.67	Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2	[more]
P37202	6.1e-10	25.93	Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q08162	2.9e-07	26.04	Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of MELO3C032185.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKL0	1.2e-64	73.85	Exosome complex exonuclease RRP44-like protein A OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BZS3	1.2e-64	73.85	exosome complex exonuclease RRP44 homolog A OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1I5P7	1.0e-63	71.79	exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0K821	1.0e-63	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074840 PE=3 SV=1	[more]
A0A6J1GLL6	2.9e-63	71.28	exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of MELO3C032185.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17510.1	1.3e-50	55.90	ribonuclease II family protein	[more]
AT2G17510.2	1.3e-50	55.90	ribonuclease II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033771	Rrp44-like cold shock domain	PFAM	PF17216	Rrp44_CSD1	coord: 139..198 e-value: 1.6E-8 score: 34.4
None	No IPR available	GENE3D	2.40.50.690		coord: 131..201 e-value: 3.8E-19 score: 70.5
None	No IPR available	GENE3D	3.40.50.1010		coord: 10..68 e-value: 4.6E-9 score: 38.0
None	No IPR available	PANTHER	PTHR23355	RIBONUCLEASE	coord: 17..62
None	No IPR available	PANTHER	PTHR23355	RIBONUCLEASE	coord: 92..195
None	No IPR available	PANTHER	PTHR23355:SF35	EXOSOME COMPLEX EXONUCLEASE RRP44	coord: 17..62
None	No IPR available	PANTHER	PTHR23355:SF35	EXOSOME COMPLEX EXONUCLEASE RRP44	coord: 92..195
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 138..198

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032185	MELO3C032185	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032185.1:exon:183442	MELO3C032185.1:exon:183442	exon
MELO3C032185.1:exon:183443	MELO3C032185.1:exon:183443	exon
MELO3C032185.1:exon:183444	MELO3C032185.1:exon:183444	exon
MELO3C032185.1:exon:183445	MELO3C032185.1:exon:183445	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032185.1:cds	MELO3C032185.1:cds	CDS
MELO3C032185.1:cds	MELO3C032185.1:cds_2	CDS
MELO3C032185.1:cds	MELO3C032185.1:cds_3	CDS
MELO3C032185.1:cds	MELO3C032185.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032185.1	MELO3C032185.1-protein	polypeptide