MELO3C031716.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C031716.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Plant transposase
Location	chr11: 4486715 .. 4486874 (-)
Sequence length	160
RNA-Seq Expression	MELO3C031716.1
Synteny	MELO3C031716.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGAATCTTCTTTTCAATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCTATCGTGCGTCGACCGCTGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGTGGAGGACGGCATGGAGAAGATGATAGGGTAGGGTGGGGCCCACGTATATAATAT

mRNA sequence

CAATGAATCTTCTTTTCAATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCTATCGTGCGTCGACCGCTGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGTGGAGGACGGCATGGAGAAGATGATAGGGTAGGGTGGGGCCCACGTATATAATAT

Coding sequence (CDS)

ATGAATCTTCTTTTCAATTTCTCCTCGCCTCAATCGCCGCCGTCCTCCACCCTATCGTGCGTCGACCGCTGTGGGAAAATGGAGAGGGATGAGAAGAAGATGGTGGAGGACGGCATGGAGAAGATGATAGGGTAG

Protein sequence

MNLLFNFSSPQSPPSSTLSCVDRCGKMERDEKKMVEDGMEKMIG

Homology

[Close]

BLAST of MELO3C031716.1 vs. NCBI nr
Match: KAA0058315.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 4   LFNFSSPQSPPSSTLSCVDRCGK-----------MERDEKKMVEDGMEKMIG 45
           LF+FSSPQS PSS LSC DRCGK           MERDEKKMVEDG+EKM+G
Sbjct: 182 LFDFSSPQSLPSSILSCADRCGKMEREEDGGRRRMERDEKKMVEDGVEKMMG 233

[Close]

BLAST of MELO3C031716.1 vs. ExPASy TrEMBL
Match: A0A5A7UXH0 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006500 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 4   LFNFSSPQSPPSSTLSCVDRCGK-----------MERDEKKMVEDGMEKMIG 45
           LF+FSSPQS PSS LSC DRCGK           MERDEKKMVEDG+EKM+G
Sbjct: 182 LFDFSSPQSLPSSILSCADRCGKMEREEDGGRRRMERDEKKMVEDGVEKMMG 233

The following BLAST results are available for this feature:

BLAST of MELO3C031716.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058315.1	7.8e-08	67.31	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031716.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031716.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXH0	3.8e-08	67.31	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]

BLAST of MELO3C031716.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C031716	MELO3C031716	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031716.1:exon:311214	MELO3C031716.1:exon:311214	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031716.1:three_prime_utr	MELO3C031716.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031716.1:cds	MELO3C031716.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031716.1:five_prime_utr	MELO3C031716.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C031716.1	MELO3C031716.1-protein	polypeptide