MELO3C031548.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C031548.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMevalonate kinase-like
Locationchr05: 25773460 .. 25774964 (-)
Sequence length623
RNA-Seq ExpressionMELO3C031548.1
SyntenyMELO3C031548.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCGGGGAGAAGCCTTTACGCTGCATTTCTTCATACATAAACAGAGCTCCAAACTTGTCACCGCCATTGCAGTACCCTTTAATCATCGAGTTCCAGACGTAGACAGTTGGCTGATCAATTTGATCGAATACTGTTCTTGCATATTCATTGTCACCCAGTTCGGAATTTGCGCAAAAATCAATAAGTCTGCTGCAAGGGATTATGTTGTTGACGACTGAAGTTTTGATCATCAGACTTTGAATTTGTTTCAACTCCTTCATGGTTTTGCATTTTTCCAAGAAACTCATAATAGTGTAATAACGCTGGTTCATTATCTTCGTTCTTAACCAGAAATGCGAGATTGAAGATTATGGAAGTGAACTATCGAGTAAGAATTATGTTGAAGATACGAAGGGGATATAGGTATCAAATCCCGATCAATTCCAAAATTCGGACTATTCAACCGATATATACCGAATCTAAATTAATATAACATATAATATATAAATAAATATTATATATTAGATTATATTTTTAATAAAATATAAAGTTCAACTGAAAAGTAAAAACACGCGCCCAGTCCACGCCGATTCGTCTTCTGCTTTCCTTCGTCTCTCTCTGTCCGATCGATTTCCATCTCATTTTCGCCCACAGACCCACGTCGATCCGAATCCTATATCTCATCGGCCTTCAAGTTCGTCTTCTCATTCTCGCCGCCGGTCTCCTCATCCTCGCCGTGACGCCGTCTGTCTCCTCCTCACCGTCAGTTCGGCCCTCGCCTTCCATCTTGAGGTTAGTACAAATTGATTTTATATCATAAAGATCCTATTTGAATACTTTACAAACCTCTTTTTACATCATTGTTAGTATCTTATTTTTAAAGAAAAGAAAATAAAAAAAACAAAAGAACAAGAAACGCCTTTGCTTCTACCTTTTAATTTAGCTGATCGTAGAACCTTGATTTTATGATGCTGTAATTACAATTTTGTAGAAAATACTGTAATTACATTTACATTTTGTAATTAATTTTGTAGAATCTTGTAGAACCAAAAATGATTTTGAATTTGAAAAAAAAATAATGCAATCGGACAATTCAATCCAATCTAATCTATAGTTTACGGATTGGATTAGATTCGAAACAATTTTGCCAACCCAACCCAACAAAAAAAAATGCTTTTTAGATAAGATATTCTGTTGCAGCTGCCACGTACAAAATGGCCACACTTTTGCATGTAAAAAGGGTTACTTTTTTTCTTTATGCCCTTTTCATTTCTTCCTTTCGTGATTGGGTTTTACAGAGAAAGCTCAAGCTTCCTTCTTCTTGCTTTGTTCTTCTGTGCGTGTTGATTTCTCCTTTTTTATGGAAGATTTTTCTGTAGGTGATGAAAATGAAGAAAATGAAGAGAGAGAAAACATTATTGAAAGCATATTGGTTTCAATGATCGACGAATCTGCGGCAGTTTGTCAATTCAACGATTTGCTTCGATTGCTGTTCTACACAGAGAAGAGACACCCAGAATAA

mRNA sequence

ATGGTCCGGGGAGAAGCCTTTACGCTGCATTTCTTCATACATAAACAGAGCTCCAAACTTGTCACCGCCATTGCAGTACCCTTTAATCATCGAGTTCCAGACGTAGACAGTTGGCTGATCAATTTGATCGAATACTGTTCTTGCATATTCATTGTCACCCAGTTCGGAATTTGCGCAAAAATCAATAAGTCTGCTGCAAGGGATTATATTATATTTTTAATAAAATATAAAGTTCAACTGAAAAGTAAAAACACGCGCCCAGTCCACGCCGATTCGTCTTCTGCTTTCCTTCGTCTCTCTCTGTCCGATCGATTTCCATCTCATTTTCGCCCACAGACCCACGTCGATCCGAATCCTATATCTCATCGGCCTTCAAGTTCGTCTTCTCATTCTCGCCGCCGGTCTCCTCATCCTCGCCGTGACGCCGTCTGTCTCCTCCTCACCGTCAGTTCGGCCCTCGCCTTCCATCTTGAGCTGTAGGTGATGAAAATGAAGAAAATGAAGAGAGAGAAAACATTATTGAAAGCATATTGGTTTCAATGATCGACGAATCTGCGGCAGTTTGTCAATTCAACGATTTGCTTCGATTGCTGTTCTACACAGAGAAGAGACACCCAGAATAA

Coding sequence (CDS)

ATGGTCCGGGGAGAAGCCTTTACGCTGCATTTCTTCATACATAAACAGAGCTCCAAACTTGTCACCGCCATTGCAGTACCCTTTAATCATCGAGTTCCAGACGTAGACAGTTGGCTGATCAATTTGATCGAATACTGTTCTTGCATATTCATTGTCACCCAGTTCGGAATTTGCGCAAAAATCAATAAGTCTGCTGCAAGGGATTATATTATATTTTTAATAAAATATAAAGTTCAACTGAAAAGTAAAAACACGCGCCCAGTCCACGCCGATTCGTCTTCTGCTTTCCTTCGTCTCTCTCTGTCCGATCGATTTCCATCTCATTTTCGCCCACAGACCCACGTCGATCCGAATCCTATATCTCATCGGCCTTCAAGTTCGTCTTCTCATTCTCGCCGCCGGTCTCCTCATCCTCGCCGTGACGCCGTCTGTCTCCTCCTCACCGTCAGTTCGGCCCTCGCCTTCCATCTTGAGCTGTAG

Protein sequence

MVRGEAFTLHFFIHKQSSKLVTAIAVPFNHRVPDVDSWLINLIEYCSCIFIVTQFGICAKINKSAARDYIIFLIKYKVQLKSKNTRPVHADSSSAFLRLSLSDRFPSHFRPQTHVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLEL
Homology
[Close]
BLAST of MELO3C031548.1 vs. NCBI nr
Match: KAA0047951.1 (mevalonate kinase-like [Cucumis melo var. makuwa] >TYK18324.1 mevalonate kinase-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 9.7e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 112 QTHVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLE 159
           +THVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLE
Sbjct: 6   RTHVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLE 52

[Close]
BLAST of MELO3C031548.1 vs. ExPASy TrEMBL
Match: A0A5A7U316 (Mevalonate kinase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00350 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.7e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 112 QTHVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLE 159
           +THVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLE
Sbjct: 6   RTHVDPNPISHRPSSSSSHSRRRSPHPRRDAVCLLLTVSSALAFHLE 52

The following BLAST results are available for this feature:
BLAST of MELO3C031548.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047951.19.7e-1697.87mevalonate kinase-like [Cucumis melo var. makuwa] >TYK18324.1 mevalonate kinase-... [more]
BLAST of MELO3C031548.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031548.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U3164.7e-1697.87Mevalonate kinase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
BLAST of MELO3C031548.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..137

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C031548MELO3C031548gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031548.1:exon:156089MELO3C031548.1:exon:156089exon
MELO3C031548.1:exon:156088MELO3C031548.1:exon:156088exon
MELO3C031548.1:exon:156087MELO3C031548.1:exon:156087exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031548.1:three_prime_utrMELO3C031548.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031548.1:cdsMELO3C031548.1:cdsCDS
MELO3C031548.1:cdsMELO3C031548.1:cds_2CDS
MELO3C031548.1:cdsMELO3C031548.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C031548.1MELO3C031548.1-proteinpolypeptide