MELO3C031390.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C031390.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr01: 28176061 .. 28176492 (+)
Sequence length	347
RNA-Seq Expression	MELO3C031390.1
Synteny	MELO3C031390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAGGCGTGTGCGTACGAAAGACATTTCTCGTTCCCTGCCTTAAGTGGGCGGACGTTGGCAAAGAATACATTGAAGTCGTCAAGGGCGAGCTCTAGGTAATTACGTGCATCACATGTTTATGATTTCATTTGAAATATATCTAAGTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGCAGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTTTAAAGAGTTTCGAGCTGACTGTCACAGACACTTCAAAAAGTACAATGACGTCGAGGAGGCTCGTGTCAACCCACCAAACATATTGGTTGGACGCCACGAGGATTGACACTTCCTCTGCGACCACTACATAAACCGTGCATTCCAGGTATTTTTCATGCTTAATTATGATTTCAACTTT

mRNA sequence

CAATAGGCGTGTGCGTACGAAAGACATTTCTCGTTCCCTGCCTTAAGTGGGCGGACGTTGGCAAAGAATACATTGAAGTCGTCAAGGGCGAGCTCTAGCAGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTTTAAAGAGTTTCGAGCTGACTGTCACAGACACTTCAAAAAGTACAATGACGTCGAGGAGGCTCGTGTCAACCCACCAAACATATTGGTTGGACGCCACGAGGATTGACACTTCCTCTGCGACCACTACATAAACCGTGCATTCCAGGTATTTTTCATGCTTAATTATGATTTCAACTTT

Coding sequence (CDS)

ATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTTTAAAGAGTTTCGAGCTGACTGTCACAGACACTTCAAAAAGTACAATGACGTCGAGGAGGCTCGTGTCAACCCACCAAACATATTGGTTGGACGCCACGAGGATTGA

Protein sequence

MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED

Homology

[Close]

BLAST of MELO3C031390.1 vs. NCBI nr
Match: KAA0040895.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 5.8e-17
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFRADCHRHFKKY+D EEAR NPPN LVGRHED
Sbjct: 206 MNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRHED 252

[Close]

BLAST of MELO3C031390.1 vs. NCBI nr
Match: KAA0032327.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFR DCHRHFKKY+D EEAR NPPN LVGRHED
Sbjct: 278 MNRFVEHQMLTTFKEFRIDCHRHFKKYSDPEEARANPPNTLVGRHED 324

[Close]

BLAST of MELO3C031390.1 vs. NCBI nr
Match: KAA0060224.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFRADCHRHFKKY+D EEAR NPPN+LVGR ED
Sbjct: 309 MNRFVEHQMLTTFKEFRADCHRHFKKYSDSEEARANPPNVLVGRDED 355

[Close]

BLAST of MELO3C031390.1 vs. NCBI nr
Match: TYJ99419.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFR DCHRHFKKY+D EEAR NPPN LVGRHED
Sbjct: 275 MNRFVEHQMLTTFKEFRIDCHRHFKKYSDPEEARANPPNTLVGRHED 321

[Close]

BLAST of MELO3C031390.1 vs. NCBI nr
Match: TYK21531.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFRADCHRHFKKY+D EEAR NPPN+LVGR ED
Sbjct: 118 MNRFVEHQMLTTFKEFRADCHRHFKKYSDSEEARANPPNVLVGRDED 164

[Close]

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL
Match: A0A5A7THM5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00040 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-17
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFRADCHRHFKKY+D EEAR NPPN LVGRHED
Sbjct: 206 MNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRHED 252

[Close]

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL
Match: A0A5A7SSE5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001860 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFR DCHRHFKKY+D EEAR NPPN LVGRHED
Sbjct: 278 MNRFVEHQMLTTFKEFRIDCHRHFKKYSDPEEARANPPNTLVGRHED 324

[Close]

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL
Match: A0A5A7UYU8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00520 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFRADCHRHFKKY+D EEAR NPPN+LVGR ED
Sbjct: 309 MNRFVEHQMLTTFKEFRADCHRHFKKYSDSEEARANPPNVLVGRDED 355

[Close]

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL
Match: A0A5A7SNG1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00900 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFRADCHRHFKKY+D EEARVNPPN LVGR ED
Sbjct: 128 MNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARVNPPNALVGRDED 174

[Close]

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL
Match: A0A5D3BKF1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00050 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1   MNRFVEHQMLTTFKEFRADCHRHFKKYNDVEEARVNPPNILVGRHED 48
           MNRFVEHQMLTTFKEFR DCHRHFKKY+D EEAR NPPN LVGRHED
Sbjct: 275 MNRFVEHQMLTTFKEFRIDCHRHFKKYSDPEEARANPPNTLVGRHED 321

The following BLAST results are available for this feature:

BLAST of MELO3C031390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040895.1	5.8e-17	91.49	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0032327.1	2.2e-16	89.36	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0060224.1	2.2e-16	89.36	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ99419.1	2.2e-16	89.36	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK21531.1	2.2e-16	89.36	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031390.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THM5	2.8e-17	91.49	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SSE5	1.1e-16	89.36	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UYU8	1.1e-16	89.36	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SNG1	1.1e-16	91.49	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BKF1	1.1e-16	89.36	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C031390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C031390	MELO3C031390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031390.1:exon:30676	MELO3C031390.1:exon:30676	exon
MELO3C031390.1:exon:30677	MELO3C031390.1:exon:30677	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031390.1:five_prime_utr	MELO3C031390.1:five_prime_utr	five_prime_UTR
MELO3C031390.1:five_prime_utr	MELO3C031390.1:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031390.1:cds	MELO3C031390.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031390.1:three_prime_utr	MELO3C031390.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C031390.1	MELO3C031390.1-protein	polypeptide