MELO3C028675.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C028675.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr06: 18613741 .. 18614174 (-)
Sequence length434
RNA-Seq ExpressionMELO3C028675.1
SyntenyMELO3C028675.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAAACTTAAGAATAAGTTTTCCCTTGAGTATAGAGAGGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTTACGTTGATGCCTACAGATGAATAAGGTGTCCATGCAAGAGATGTATGAATTTAAATTGAAACTCACTAGAGGGTGTGGAGCGACAGTTATTGATTATTGGAATATCCCTCTACTACATAGAATGGGTGTATCATGGAGAGTCATTGAGCTTCAGTGGTACAAAAAACTTTGAGGAAGGAACTAGTAGTAACCCTTTTGATGAAGGAACTAGTAGTAGGCAGTTTAATGAAGAAGATGATATGTTTAGTATGATGAATGATTTACAAGCCCCGATTGAACATGAAGAGGAAACAGAGGAACTTCGTTTGAAAGATGAAATGACGAGGAATATTGGGGTAGATATAGATGAAGATACAACAA

mRNA sequence

GATGAAACTTAAGAATAAGTTTTCCCTTGAGTATAGAGAGGGAGTGACCCAATTTTTAGAATTTGCCAAGTTTTACGTTGATGCCTACAGATGAATAAGGTGTCCATGCAAGAGATGTATGAATTTAAATTGAAACTCACTAGAGGGTGTGGAGCGACAGTTATTGATTATTGGAATATCCCTCTACTACATAGAATGGGTGTATCATGGAGAGTCATTGAGCTTCAGTGGTACAAAAAACTTTGAGGAAGGAACTAGTAGTAACCCTTTTGATGAAGGAACTAGTAGTAGGCAGTTTAATGAAGAAGATGATATGTTTAGTATGATGAATGATTTACAAGCCCCGATTGAACATGAAGAGGAAACAGAGGAACTTCGTTTGAAAGATGAAATGACGAGGAATATTGGGGTAGATATAGATGAAGATACAACAA

Coding sequence (CDS)

ATGAATAAGGTGTCCATGCAAGAGATGTATGAATTTAAATTGAAACTCACTAGAGGGTGTGGAGCGACAGTTATTGATTATTGGAATATCCCTCTACTACATAGAATGGGTGTATCATGGAGAGTCATTGAGCTTCAGTGGTACAAAAAACTTTGA

Protein sequence

MNKVSMQEMYEFKLKLTRGCGATVIDYWNIPLLHRMGVSWRVIELQWYKKL
Homology
BLAST of MELO3C028675.1 vs. NCBI nr
Match: KAA0051834.1 (uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK21412.1 uncharacterized protein E5676_scaffold609G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 6  MQEMYEFKLKLTRGCGATVIDYWNIPLLHRMGVSWRVIELQ 47
          MQEM+EFKL+L RGCG T  DYWNI LLHRM VSWRVI+L+
Sbjct: 1  MQEMFEFKLELIRGCGTTSTDYWNILLLHRMSVSWRVIKLR 41

BLAST of MELO3C028675.1 vs. NCBI nr
Match: KAA0051873.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21365.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 6  MQEMYEFKLKLTRGCGATVIDYWNIPLLHRMGVSWRVI 44
          MQE +EFKL+L RGCG T  D WN PLLHRMGVSWRVI
Sbjct: 1  MQETFEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVI 38

BLAST of MELO3C028675.1 vs. NCBI nr
Match: KAA0062293.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26693.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-04
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 3   KVSMQEMYEFKLKLTRGCGATVIDYWNIP-----LLHRMGVSWRVIE 45
           KVSM+EMYE KL+LTRGCG    DYWNIP     + H   +S+R IE
Sbjct: 108 KVSMREMYELKLELTRGCGMISTDYWNIPYYTEWVYHGESLSFRGIE 154

BLAST of MELO3C028675.1 vs. ExPASy TrEMBL
Match: A0A5D3DCW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00610 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 6  MQEMYEFKLKLTRGCGATVIDYWNIPLLHRMGVSWRVIELQ 47
          MQEM+EFKL+L RGCG T  DYWNI LLHRM VSWRVI+L+
Sbjct: 1  MQEMFEFKLELIRGCGTTSTDYWNILLLHRMSVSWRVIKLR 41

BLAST of MELO3C028675.1 vs. ExPASy TrEMBL
Match: A0A5D3DCW2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00030 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 6  MQEMYEFKLKLTRGCGATVIDYWNIPLLHRMGVSWRVI 44
          MQE +EFKL+L RGCG T  D WN PLLHRMGVSWRVI
Sbjct: 1  MQETFEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVI 38

BLAST of MELO3C028675.1 vs. ExPASy TrEMBL
Match: A0A5A7V2I6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003540 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-04
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 3   KVSMQEMYEFKLKLTRGCGATVIDYWNIP-----LLHRMGVSWRVIE 45
           KVSM+EMYE KL+LTRGCG    DYWNIP     + H   +S+R IE
Sbjct: 108 KVSMREMYELKLELTRGCGMISTDYWNIPYYTEWVYHGESLSFRGIE 154

BLAST of MELO3C028675.1 vs. ExPASy TrEMBL
Match: A0A5A7VLA7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00480 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 0

Query: 4   VSMQEMYEFKLKLTRGCGATVIDYWNIPLLH 35
           VSMQEMY+FKLKLTR CG T  DYWNI   H
Sbjct: 155 VSMQEMYDFKLKLTRCCGTTSTDYWNISSAH 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0051834.12.8e-0975.61uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0051873.15.3e-0876.32CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21365.1 CACTA en-... [more]
KAA0062293.12.7e-0457.45CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26693.1 CACTA en-... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DCW31.4e-0975.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCW22.6e-0876.32CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7V2I61.3e-0457.45CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7VLA75.0e-0474.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C028675MELO3C028675gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028675.1:exon:177753MELO3C028675.1:exon:177753exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028675.1:three_prime_utrMELO3C028675.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028675.1:cdsMELO3C028675.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028675.1:five_prime_utrMELO3C028675.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C028675.1MELO3C028675.1-proteinpolypeptide