MELO3C028672.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C028672.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	LINE-1 reverse transcriptase isogeny
Location	chr11: 15853817 .. 15854302 (+)
Sequence length	166
RNA-Seq Expression	MELO3C028672.1
Synteny	MELO3C028672.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTATACTGCCAACTACCCAAGAGGGCAAGTAGCAAGGATATGGCTAACGCGCGTCAGGAGGAGTTTGAAAACAAACTCCACCTTGACGAGATAACTTCCATCATTTGTATCCCAAAAGGAGAACAAGTGTGGGTATTAGGCACCGAGAGGTTGTCACCCTTAAACGTGAAGCTCTATAAGCCTTATAAGTGAAGCTTTCTAGATATAACTTGCTTAACGCGACTTGGTCATTTGGATCCAAAAGGTGATCATGTGTGGCATTTAACAACTCTTAAAGGAGTGAATCTTAATCACAAGCACGTTAATTAAGTTATATCGCATCAAGGATCTTTGATTGCTTAATCGCCTGGTAATGCATGAATTTTCCTTCAACCCCCTTCTTTTATGCAAGTTAGTTCATAATTCCATTTCACATCCATTTTAATCCCCCTTTATAGGTTCTCTAGTATAGATAAGTAGGTATAGTTTAAACTTACACTCATTCA

mRNA sequence

TGTATACTGCCAACTACCCAAGAGGGCAAGTAGCAAGGATATGGCTAACGCGCGTCAGGAGGAGTTTGAAAACAAACTCCACCTTGACGAGATAACTTCCATCATTTGTATCCCAAAAGGAGAACAAGTGTGGGTATTAGGTATAGTTTAAACTTACACTCATTCA

Coding sequence (CDS)

ATGGCTAACGCGCGTCAGGAGGAGTTTGAAAACAAACTCCACCTTGACGAGATAACTTCCATCATTTGTATCCCAAAAGGAGAACAAGTGTGGGTATTAGGTATAGTTTAA

Protein sequence

MANARQEEFENKLHLDEITSIICIPKGEQVWVLGIV

Homology

[Close]

BLAST of MELO3C028672.1 vs. NCBI nr
Match: TYJ98051.1 (LINE-1 reverse transcriptase isogeny [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVLGI 36
          MAN R+EEFENKLHL + TSIIC PKG QVW +G+
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGV 35

[Close]

BLAST of MELO3C028672.1 vs. NCBI nr
Match: KAA0062632.1 (uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVLGI 36
          MAN R+EEFENKLHL + TSIIC PKG QVW +G+
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGV 35

[Close]

BLAST of MELO3C028672.1 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVL 34
          MAN  +EEF+  LH+DEITSI C+PKGEQVWVL
Sbjct: 17 MANTCKEEFKYLLHIDEITSITCVPKGEQVWVL 49

[Close]

BLAST of MELO3C028672.1 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVLG 35
          MANA +E+F ++L+L +ITSIIC+PKGEQVWV G
Sbjct: 45 MANACKEKFGDELYLSKITSIICVPKGEQVWVYG 78

[Close]

BLAST of MELO3C028672.1 vs. ExPASy TrEMBL
Match: A0A5D3BHD0 (LINE-1 reverse transcriptase isogeny OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00010 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVLGI 36
          MAN R+EEFENKLHL + TSIIC PKG QVW +G+
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGV 35

[Close]

BLAST of MELO3C028672.1 vs. ExPASy TrEMBL
Match: A0A5A7V332 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001430 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVLGI 36
          MAN R+EEFENKLHL + TSIIC PKG QVW +G+
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGV 35

[Close]

BLAST of MELO3C028672.1 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-05
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVL 34
          MAN  +EEF+  LH+DEITSI C+PKGEQVWVL
Sbjct: 17 MANTCKEEFKYLLHIDEITSITCVPKGEQVWVL 49

[Close]

BLAST of MELO3C028672.1 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 1  MANARQEEFENKLHLDEITSIICIPKGEQVWVLG 35
          MANA +E+F ++L+L +ITSIIC+PKGEQVWV G
Sbjct: 45 MANACKEKFGDELYLSKITSIICVPKGEQVWVYG 78

The following BLAST results are available for this feature:

BLAST of MELO3C028672.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C028672.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98051.1	4.6e-06	71.43	LINE-1 reverse transcriptase isogeny [Cucumis melo var. makuwa]	[more]
KAA0062632.1	4.6e-06	71.43	uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa]	[more]
TYK07860.1	8.7e-05	72.73	uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa]	[more]
KAA0026294.1	2.5e-04	67.65	cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >...	[more]

BLAST of MELO3C028672.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHD0	2.2e-06	71.43	LINE-1 reverse transcriptase isogeny OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7V332	2.2e-06	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C951	4.2e-05	72.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DDG5	1.2e-04	67.65	Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa ...	[more]

BLAST of MELO3C028672.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C028672	MELO3C028672	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028672.1:exon:323827	MELO3C028672.1:exon:323827	exon
MELO3C028672.1:exon:323828	MELO3C028672.1:exon:323828	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028672.1:five_prime_utr	MELO3C028672.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028672.1:cds	MELO3C028672.1:cds	CDS
MELO3C028672.1:cds	MELO3C028672.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028672.1:three_prime_utr	MELO3C028672.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C028672.1	MELO3C028672.1-protein	polypeptide