MELO3C027551.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C027551.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDUF4218 domain-containing protein
Locationchr01: 27588276 .. 27588435 (-)
Sequence length160
RNA-Seq ExpressionMELO3C027551.1
SyntenyMELO3C027551.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGCCGCAGGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGCCGCGTCGCCTCATTCATCG

mRNA sequence

ACGGCCGCAGGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGCCGCGTCGCCTCATTCATCG

Coding sequence (CDS)

ACGGCCGCAGGCTTCGACGACCGCAGCTTCGACGGCTGCACGCTTCGACGACAGCAGCTTCGACGACAACCACCGCCTCGCGTCATTCATCGCGTCAATCGGGCTGCGACCATCCACTGTTTCTCGTCTAACGACAACCGCCGCGTCGCCTCATTCATC

Protein sequence

TAAGFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDNRRVASFI
Homology
[Close]
BLAST of MELO3C027551.1 vs. NCBI nr
Match: KAA0052339.1 (hypothetical protein E6C27_scaffold207G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  TAAGFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDNRRVASFI 54
          TAAGFDD SFDGCTL+R QLRRQPP RVIHRVNRAATIHCF S+DN RVASFI
Sbjct: 27 TAAGFDDLSFDGCTLQRPQLRRQPPRRVIHRVNRAATIHCFLSDDNHRVASFI 79

[Close]
BLAST of MELO3C027551.1 vs. ExPASy TrEMBL
Match: A0A5A7UFT3 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001770 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1  TAAGFDDRSFDGCTLRRQQLRRQPPPRVIHRVNRAATIHCFSSNDNRRVASFI 54
          TAAGFDD SFDGCTL+R QLRRQPP RVIHRVNRAATIHCF S+DN RVASFI
Sbjct: 27 TAAGFDDLSFDGCTLQRPQLRRQPPRRVIHRVNRAATIHCFLSDDNHRVASFI 79

The following BLAST results are available for this feature:
BLAST of MELO3C027551.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052339.15.0e-1786.79hypothetical protein E6C27_scaffold207G001770 [Cucumis melo var. makuwa][more]
BLAST of MELO3C027551.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027551.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UFT32.4e-1786.79DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of MELO3C027551.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C027551MELO3C027551gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C027551.1:exon:30186MELO3C027551.1:exon:30186exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C027551.1:three_prime_utrMELO3C027551.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C027551.1:cdsMELO3C027551.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C027551.1MELO3C027551.1-proteinpolypeptide