MELO3C027004.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C027004.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	poly(A)-specific ribonuclease PARN-like
Location	chr01: 27337736 .. 27349226 (-)
Sequence length	1654
RNA-Seq Expression	MELO3C027004.1
Synteny	MELO3C027004.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTATGTAACCCTTCTCCAAACATATTTGTCACAATAAATTCGTAACCTCTTCTCCGACCACCCTCGTTAAGCAGACTCCATCTCCATAGGAGAGTCTTGGTAAAGCTTGGCACATAAAACAGAACTCGCAACTCATTTCGCCACTTCTGCCATGAATTTTGAATGAGAGCTTAACCGGGAAAACTATGGCGTCTCGGTTCTCATATTTCCAGCTGCACAGACGCCTCTATACAACCACCACCGATCAATGGAGTATCAAGCAAGTTCGCAATTCCAACTTCCATGGCTGCTTGGGGGACCTGAAGAACCATATCTCCGATTCCGACTTCATCGCATTTTTTCTTCAGAGAACGGGTTCTTCTTCTTTCCCTTGGCACCGCCCTCAGCCCTTCGACACTCTCGATACCGCTTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAGTTTTCTCTCTGTCCTTTCTCTGTTAGAGATTCCAAGCTAATCGCCCATCCGTAAGCTCCCCCGGGCCGCCGCGTATCTTCATGTTTGGATGTTTGGAGTCTTGTACTCTTGGGCAGGTTTTGGGAATTGGGTGTTTATTTTGATTGATGAATATTTCTCCGCACTTGCAATGAATTTGGTTTCTTTCACTGGAATTTAAAGTAGGGACAAGGAGTATATTCTGTAGTATTCATAGATGAGTATGATTTATAATGGAAAGTTTGATGCTTTCTGGCTAATATTTTATACTTTTGCGCATGGTCTGTCCGTTCATCATCATTTTAAACTCTAAATTCCAGTATCTTTTATTATTTGGTGATTAATACAAATTTGATTGATGAAAATGTGTTTCATTGAATGGTGTAGGTACAACTTTCATTTGTTCCCCAGAGATGAACTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATAGCTCGTGAAGATTTTGACTTTGGTGCTTGGGTATATGATGGTAAGCCTAATTGTGGACAATTTACTTCTGTTTCACCCTCACTAATAGAGGAGAAATTCTAAAACCCAGATTTCCAATCCCTAAACCACCTTCCTTCCAAGGTTTCAGCAAGAGCAGAGGTTGAATTTGAGAGGCATTCTTTAGAAAGAAAACAGTATCTTTGACCCTTGAAATTTTGTTCCCATTATCAAGCTCAAGAGAAGAACTTAGGTTCTTAAGTCTCCTAAAATGAAAATAAGATGTCTCACGATTACGTTCACTAATCCAATCTATCTTGGACTACATTTTGTACATCTCTTCTGTTCGAATAAGAATCTCAGAATCCCCCTTCAATCTGATTAACTCTTCCCATGCTACACGCAAAATCCTCACAGACTCCAAGTCATGTAAAATGTTTATCTTATTAATTATCTTCTATTTTTTAGTGAAAGAACTTTTGAAGACCCTCAGGTTCCAGCCTCTAGGCTTGAACTTTAGGGACTCCAATCTTATTGTAAACCCAAGTACCTCCCATCTCCCAACCATATCAGCTGACCATTAGTCGAGCTTGGAAGACTTGAAAAAAGTATGCTTTATTCACACACTCCAAATATGAAACGACAAGGTCCCTATCTTGTATCTGAGAACTTACAAAACGACCTGTTGTTGGTCAGATTCAACTATGGATGGGACTCCAATGGCTTGATATCCTCCACGAAATTTTTTTCTGCCCTTTAAGAGCAAAAACGTATCTACCTGGCAAGAAATGGGATTAATACACAAATTGGATAAAGTAATCTGACAGCATGAGGGGAGGATAAAATAGAATATACTCTTCAAGATACTTTTGGTAAAATTGCATCAGTCTAGATGATTTGACTTCTCAAGATTTCTTTAGACAAAACTCTCATCACCAAAATTTCCAACCACATACCAGCTAGATTCACTATTACAAATGCTGAAGGTGCCACTCAAGTCTTCCTACAAATCATCTTTTTGAGATTGTAGCAGTAGTACATTTGAACGCCAATCTTCCAAATTTTAGTTGGATCTGCTTGTTTCGAGTAGTTTTTATCAACCTAAATATTATTTATCGCTTTCTAGCTGCTTTATCTCTTGATTTTTGGAAAAAATTAAACCTTTGTTTTATCTTTATACTGAATCTATGAAGTATCATCTATATTGCACTTTGACTTCTAATGGTCTTTTTCCGTTTTTTTTTTTCTTTTTTTGGTTCCATGCATATCATATTTATCTGGAGCTCAAGAGTCTATAGCAAAAGCTCAAATGGGCCGTCAAACTCTAACACCTAATACTAACGCTGTGAAATCTTCTTCTGAACCGTCAGTTTTTGATACCATTTTTGTTCAACGGGTTAAATCACGTGTAAAGAACTGGAAAGATGCATATGATTCAAGCTAAAAAAAAATGGTAATTTACAACTTAGTATTGCTTTCTAAAACAATTTCATCATGTTCTTTTCTTTCCATTTTGCTCTCACATTTTTTAAACTGTGTAGGTTAAGAAACACTTTCGGTTCTTGAACATTTTTATTAAAGTAACATTTTTGCCTCTAAACTCTAGCCGATGAATCTGATGATTTAATTTCTATACTTTCAAACTTGTTAAGTTAAATGAGATTTATTGACTATGCATATCAATAAATTGATAGGACCAAAAGTGTTTTTAAACTACAAAGAAAAGAGATTTTGATGAGCTTTTCATGATAGGGATTAAATGGTTACAAGTTTAAAAGTTAAAAGGATTGAATTGTTACCTAGAAAAATTCAATGACTAAATTATTGCAAATTAAAAGAACGATGGGTGAAATTGTTACAAAATTAAAGTTCAAACAAAATTGTTACTCGTATGGAGGTTGAAGGACTAAAGTGTTTTTTAACCTCTTTTATTTCTTTGTTTCTTGAAATAGTAAAGGTAATGTTTCCATAATATAGACACATTGCTAAGTACGTTGAAAAAGCTCATAGTCGGTATTGAGCAGTATGGATCAAGACCATCTATTGTTATAGATGTTTATAGGGAATGATTAGTTCTACTTGTATTAAAGGTAACTTGACCTTTTCAAAATATGAGTGGTTTAATACGTGTATTACTTGTTTTTAACTATGCTAAATTATTATGGACATTTTACATCTCCAGGGATATCCCCTTAAACCGTTATCTATAATCAAGAATTATAGATCTCTGATCTCTCTCTATTGTCAATGTTATTATTTTTATTGTCAATTTTAGTAACTTTACATTTATGTTATCATGAATGTTATACACAATTTAAGGTAAAATTAATGATTTAATACATGGACGTTTATGGTTGTCTATTTAATGACTTGACTTGAATAGTTTCCATTGCATCCCTGAAATTTAATTTATGTAATTTTTGTTATTAATACTGGTACCATATAAATATTGGCTGATTTGATATGATATGATAGACAACAATTGAAAAAAGTGGATAGTTGGTCCTGATCCAAATTAAGTGACACTTGCAATATGGCATTTTCGAAGCATTTTTTTCTGTAGACCGTGCTGCCATCTTTGTCAAGCTGTTGCCCTCCTATCTTTTGTTTGCTATGTCATGCTTACTGAACCATGTTTATACAAAAGTATTGAAAGCAATAAACACGAAACCGACTTACGTGGAAACTCGAGAATCGGGAGAAAAACCACGATCTTTTTGGTTTAATTATTTTATGATATTCGTACAATAGTACAAGAGGGAATAAATAGAAAAGTACAAAGAGATAAAAAAGGAAAGAATATTTAGGGTAAATCTTCTCCATATGCTAAGCCCACTAAGTCTAATAATTCTAACACTCCGCCTCAAGTTGGGACGTAAATATCAATGAGGCCCAACTTGCTAACAAATAAGTCGAAGTTTGGTCAGGTGAGGACATTAGCAACCTATCAGCTCGAAGGGATGTACAGAATGCAAATGCTCCCACTGTCAAGTCTTTCTTTGATGAAATGTCGATCAATCTAAACATGTTTAGTTCTATCATGCTGAACTGGGTTGTTAGCAATACTAATAGCAGCTTTATTATCACAAAAAAGCTTCAATGGAGTCTCACATTCCTGATGAAGATCAGACAGGACTTTCTGGAGTCAAATTTCCTCACATATTCCCCAACTCATAGCTCTATATTCGGCCTCAGCATTGCTCCTAACCACAACACTTTGCTTCTTACTCCTCCAAGTTACAAGATTGCCCCAAACAAAGTACAATAACTGGAGGTAGACTTTCTGTCAACAACAGATCTTACCCGATCCGAGTCAGTATATGCCTCAATGGTCTTTTTATCTGTCTTTCTAAACATCAACCCTTTACCAGGTGTTGTTTTTAAGTATCTCAGAATTCTTTTGATAGCTTCCATGTGTTCCTCATAGGGAGCCTGCATAAACTGGCTGACATCACTTACAACAAAGGAAATACCAGAACGAGTATGAGATAAGTAAATCAATTTACCCACGAGGCACTGATATTGTTCTTTATCAACTGGAACTTGATCATTAGAGTTTCCTAGTTTACGGTTGAATTCAATAGGAGTGTCAGCGGGACGATATCCCAACATACCTGTCTCGGTTAGCAGATCAAGGGTGTATTTTCTCTGAGACATGGAGATGTCTTCTTTAGATCTGGCCACCTCCATTCCAAGGAAATATGTTAGATTTCCCAAATCCTTGATTTCAAATTCATTACACATTCTCTGCTTAAGTTGATTGATTTCTGCCTGATCATCTCCAGATAAAATGATGTCATCCACATAAACTATAAGAACTGCAATCTTCCCGGTCCTTGACTGTATCCTTGGGACTTGACAAAAGTAGTAAATCTGTCAAACCATGCTCTGGGTGACTGTTTCAGACCATATAAGGATTTTTGGAGTTTGCAAACCTGTTGACCAAACTGGGCTTCAAAGCCAGGTGGAGGGCTCATGTAGATCTCCTTTACTAGATATTCATTCAGAAAAGCATTCTTAACATCCAGCTGATATAGAGACCAATCTTTGTTTACAGCAACAGAAAGAAAGACTCTAACAGTATTCAACTTAGTAATAGGAGAAAAAGTTTTTGAATAATCAACACCATATGTCTGAGTAAATCCTTTTGCAACTAACCTTGTCTTATGTCTGTCAAGTGTTTCATCTGCTTTGTATTTGAGAGTGAACACCCATTTGCATCCCACAGGCTTGTGTCCCTTGGGTAGAGCACAGATCTCCCAAGTGTTATTCTTTTCAAGAGCTTTCATCTCTTCCATGACATCATTTTTCCATTCAGGGCATTCTAAAGCAATATGAATATCTTTCGGTATTGTGGTAGAGTCAAGACTGGCAGTAAAAGCTCTGAACTGTGGTGAGAGATTCTCGTATGAAACATAATTAGATATGGAGTGCTTTGTACAAGACCTAGTACCTTTTCTCAGTGCAATAGGAAGATCAAGAGAAGGAGCATGCTTGTCAAGTTTTCCTGTATGACCCTGTTCAGCTTCATTGTTACTAGTTTTTATTATGACCTCATTTTCGTCACCACTGTTCTTTTCTTCCACATTTTCAAGAACAGCAACATCAAACCTGTCATTCTCATTTATTGTATTATTAGTGCAAGGTTCAGTAGGGTTTTCCATACCTTGATCTCGAGGAGGTTTGGAGTCTTAGACTGGAGCCGGCGGCTGACTGGTAGGAGACCCGACTTCCTTTTTGAGATTCCTCCTGTAATATGTTTTCCAAGGAACTTGGTTTGTAGGTAGGATTATAGGGTGAGGATCAATGTCAGACACGATACTAAGAGTAGGTTCGATAAATTCAAAGGTGCTGTTAGACTTTTCACTCATACTCTCCCCCTGAAGATGGCTAACGGGAAAATAGGGTCGGTCCTCACAGAAAGTAACATCCATAGTGACAAAGTATTTTCTGGATGGCAGGTGAAAACATTTATAACCACGCTGGTGAGGGGGATACCCAACAAACACACAAGCCTGAGCCCGAGGGGTAAATTTGGTCTGATTAGGGCCAAAACTATGGACATAAGCGGTACACCCAAACACACGAAAAGGAACCTCTGAAACGAGACGAGTAGAGAGGTAGGACTACTTAAGACATTCTATGGGAGTTTAAAGGTGGAGGATACGAGAAGGCATTCTATTGGTTAAATGAGCTGCTATAAGAATAGCATCTCCCCACAGGTTGGAAAAGAAGTGGAAAGCATAAGGGAACGGGCTACTTCCAGAAGGTGATGATTTTTTTACTTGGCCACTCCATTTTGTTGAGGAGTGTAGGCACACGAGTTTTGGTGAACAATCCCCTTAGAGGCTAGGAATTCACTAAGGTTATGGTTTTGAAATTCCCGACTATTATCACTCTGAAGAATAACAATTTTTTTATGGAATTGTGTTTCAATGGTATGGTAGAAGTTTTGGAAAATAACGGAAACCTTAGATTTATCGGTGATAAGGTAGACCCAGGTAAGACGGGTATGATCATCAATGAAGGTTACAAATGACCTTTTTCCAAATGAGGTGGTGACCTTGGAAGGACCCCAAACGTCACTATGGATAAGGGTAAACGGTTGTGTGGGTTTATATGGTTGTGAGGGAAAAGAAACACAATGTTGATTTGTCTGAATGCACACATCACAAGGAGACATCTATTTTAAGAAAGAGATGGGGAAACAAATATTTCATATACGTAAAGTTCGGGCGACCTAATCGAAAATGCCACAACATAAAGTCATGTTCAGAGGTGCTAAAATAGGAAGACAGTAAACTAGTCGTAGAGATACTACTATCAGAGGTATCATCATTAAGGATGTAAAGTCCCCTGTTATGCCGGGCAGTGCCAATCGTCCTCCCCGAATTCAAGTCCTGAAAGCAAACAAACTCAAGTAAGAAAGTAGCTTTACAGTGCAGCTCACGGGTGATCTTATTGATAGATAACAGATTGTAAGAAAAAGCTTAGGCACATGCAAAACATTCTGGAGGGAGAAATCGTCAAAGAGGACTATTTGTCCTTTCCCAGCAATCGGGGCTAAAGAGCCATTGACTATCCGAATTTTCTCATTACTAGCACATGGGGTACAAGTGACAAAATGCTTCGGAAACCTGTCAAGTGATCTGTGGCCCCCGAGTCCAAAATCCAGGGATTTGTCCCATCAACACTAATAAGGCCAAGGGGCTGAGACATACCTGATTGAGCAATGACGCTTAGAGTAGGAGAGCTGGTCTGACTAGCAATAGGGCCGGTTGAGAGGTGTTGGCAGTCTCCCTAACATCGGTATGCCCTAAGTTCCGTTGCTCGTTGGAGGAGCGTTTGTTACCTCTTGGGGGCCGACCGTGGAGTTTCCAACACTGATCCTTGGTATGCCGTTGTTTCTTGCAGTGCTCACAAACGAGAATTGGTTTCTTATTATCATGGGTCAATGAGTGAGCACTAAAGACAACAGAGTTAGTTATATAATTTGAAGGCACGTCAGGAAGCGAAATTACTGGGTTCTTAGAATACATCGGTATATCGGTCTGTGCCAAGGATGTACTAACTTCAAAAACAGCTCTTCTATAGGTTTGATTAATCCCGAGACCACGAACATATGACTGTCCATAACTAGAGGGTGCCGATGACTCACCCGCTTCAATCCTTGATCTGTTATGGTGTTGGTCAGCTCTGTTCCTATAGAAGAAAGGTTGCTGTAAAGGGTCGACAGACAGATTTGTACTACTGTACAGATTTGCACTGCTGTACAGATTTGACAGTTTTGAAGGTTGCTGTCCGGCGACGATGGGCGGCGAATGACTGGAAGGGTGAGACGGTTGGACAGGCGACGACGCGTAGAAGCGGATGGGATGGGCGGTGAGATTAACGGACGTCGGCAGGTGGTTTCTGGCCGGAAGGTTGCGCGGACGGTGGCAAGGGTTGGCCCATTGGATAGATCGACGACATCTGAATCCGTTGGAGTAGTTTTTCCATGGTGGTGTCCACGGCGGCAGCGACAGTTGTTTTGGTCTAGGTGATTCCTAAAATTTTTTATAGGGATATGTTGTTGCTTCGCTCTGATACCATATTGAAAGCAATAAACACGAAACCAGCTTACGTGGAAACTCGAGAAGCAGGAGAAAAACCACGATGTTTTTAGTTCTATTATTTTCTGATATTCATACAATAGGTACAAGAGGGAATAAATAAAAAGTACAAAGAGATAATAAAGGAAAGAATATTTAGGGTAAATCTTTCCAATGGGCTAGGCCCACTAATTCTAATAATTCTAACAAGAAGAACTACATGAAATTATTGTTCAAAGTTAATTACAACTCTAGCTAGAGTTTAGGGAGTAAATATCTATAAGTTTATAACTGAGTTGAAAGGTCTCATTGATGTAATATTATTATCGATTATGTTCTAGGACTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTGAAAGGGAAACAAGTCTCTTTTATTAATGATAATAATAATGAGACAAAAGCTCAAAGTACAAGAGAGTTATATGATGAGTAAAATATCCTAAGGGTCTGTAGACACACCCGAGCATGTCAATTACGTTCTACTAACTTGTTTTGGTCAGTTAATTAGTTATTGGGAATAAATCAATTTATAACCCCATATGTGCAAGATAAATCAAGTAAAACCAACCTTAAAACGTTTAAAATAAACTCAAATAACATTATTCTAGAAATTGTCACAGTGAAGGACAATTACTGTGAATTTTATTGAATAAATTATAATAATTCAAAATACATAATGATGTTTTACATAAAAAATTAATATATAGATCTCAAAGAAACCACTAAAGGAAAATACATAAATGGAAAAAATATAGACTTCAAAGAAGGTAGTGTGAGTAAAAACTCATTAATTACTCTGAACTTATTAAATATGACATTAATAACAAAACGATGAACCAAGCAAAAACTATAATATCATTTCTGAAATGCCCATCCTTTGCTAATGAAAGTTCTGTTTCTTATCAGGTAAAAACCAAATCTAAAATGACTAAATTTAAGAGTGAATATATGCATTGCAATTTATTCTTAGTGTTATCCTTTTTATTGGGTAATAATGTCTTTAACTATGTTGCTTTTTCTGCAGAGGGACTATATCCGTAGACTTATATTGTTTCTTTATTTTATGTAGCTGTTGAAGGAGTTTTCTGATGACCTGGTTCCTGTAGTAATTTCAGCGAAGAGTGGAGGAACTCAAGCAATTCGTGCCATTTTGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGGTACCAGTATATTCACTGGATTTCCACATTCTAAGTTCCTGAACTATTTTCTCATAAAAAAAACAAAAAAAAGATCCCTAAACTATTAATTCTTTAACTACCACTTTGTAGAAGTTTATATACTTCAGTTGATTCTTTCATCATTTTCAACTGGCCTATGCATCTGGATAATTAAGAATATGCATGTCTTAATATTATATTTTTTTAAAAAAAATAAAATAAATAAAGGTGAAGAAATGGTACATGATGGAAATAAGGTTTGAACTTCCAAAAATTGAGAGCATTAGACTGATGGGTTAACCGAGTAATGCTAAATTGTAAATGGATTTGCTAGAATGTGCCATCCAGCTTTGTAGAACGTGTAAATTATTTTGTGTTCCCGTGCAGAAGGAGCTTCGAAATCTTGAAGACGAAGAAAGCAAGAAATTTCGTGGTTTTCGAGAGGTGATAGAGATGATTTCTGCTTCACAGAACCCTATTGTCTCCTACAGTTCTCTTCATGGTGTTTATCTTATATATTTTTTAGTTTTGGTTGATCTCTTTGCTTTATTTTCTTTTGTTCTCTAATGCTTTTGTTTTGGATGCAGAGTTTACATTTATTCATTCTAAATTCCTTGCTCCCCTGCCTACTAGCATAGATGAGTTTGCATCTTCCTTGCATTTGGTTTTCCCACAAGTGCTTGAGGTAAAGCAATTGATGAGCAAGATTGGTGGCCTCAGTAAGCCGATGAGTATAGCCGCAGCTCTTTCTTACTTGAAAAAACATTATTATGCACCTACTTACTTGGATATCCCAATTGAAGGTTTGTCACCTCATCGTCCCTTCCTGATGCTATGAAAAACACTTTTTCATTGTGTTTGTGAGAGAGAGACATGACCTAAAACTCACTTAAAATGTTTAGTAAATACGTGCTGATAATACTGATGATGACGTATATGTGGGTCCATTGGCTTTCCCAATGCTAAGCTAAGTGATTGAAGGACTCAATCAAGCACCGAAGACATTTAATCTCTGCACTTTGAGGTCTATGTTTATTTCGACTCTAAGTTTTGAAAAGTGTATAATAAGTTCTTAAGCTTTCAATTTAGTTTGTAATAGAACTTAACAAATTTGAAATTTTAAACAACCAATCGATCTATTAGATAATTTAAATTCTATGTCTAATGGAACCCCTAAAATTTTGAACAAAAATGATATCGAACTATCAAAGGTTAGAAACTAAATCCCTTATCTTGAAAGTCTAGGGAGAGGATTGAATTTGTGATTTAGCCTATATTTTTTATGTTTACATTCATTTCTTCACGGTACACATTATAAGCCTTTTGCTAGGCCTTAGTTTTTGTTTCTCTTTTTAAATTGTCTTTTGTCTTACCGATCAGGGAAAAGAAGGCCTATCCATGTTTTATCTTTTTTGTTTTACCGTAATTAGTACACAAAATCTTTTCTTAATACATCCATTTTTAAGTGAATTATTTGTGTTTTTCACGTATTGAGTATCCTTCTAAATCTCACTATTTTATTTTTCATTAGGCTCCACTGATCATCACCAAGGTCCCTAAAGTAGAAATCTTTCGTTTCTGCTAACCTTGTAGTGTTCTATTGCAGCTCCAGGAAATGATCACAAGCCTCAGGGGCATAATGCTATACGGTTATGCCATTTGTTTGCAAAAGTCTGCTCTCTACTTAAAATTGATCTCAGTGGTGTGTAATCCAACAACAATGAGTGTTTGGCCTCGATGCTCGACGAGTGTTCAAATGTTTCTTCTTCATTCTCCCCTTACCACCACGAACCCAAGGATGAGGACGTTAAGATCTGGGCTCGGGATGTTAGAAAAGCAAGTTGTAGGCATTTGGTTTTCTTGTGGGGATTTAGAGAAGGGATGACGGCTCCGTTTGTAAAAGCTTCACTTGAAGGATCCCATGAAGTTTTATGTGAAGAGTTTTATGTTTGATTCGTGGACAAGGAATGTGCCATTATCGTTTTCTCACAACCAGGCCTATCCGAGACCTTCCTTGATGCAATAAATAGTGATGGCAATGTTGGATCTTTAAGAGAGATGGTATCCGAAGGGATAAGAGCAGCAGGTTATGAAACTTACAAAAGAATGTGTAGGTTTGATTTATGGGAAGCAGATTTAGCTGAGTCCCTGGAGAGAGCCTTTTTCAAAGCCAACCCTGAAACCGCTCAGTTAGATATTTGGCATCCATGATAAAACCTTTTAAGTTTTGGTT

mRNA sequence

CGTATGTAACCCTTCTCCAAACATATTTGTCACAATAAATTCGTAACCTCTTCTCCGACCACCCTCGTTAAGCAGACTCCATCTCCATAGGAGAGTCTTGGTAAAGCTTGGCACATAAAACAGAACTCGCAACTCATTTCGCCACTTCTGCCATGAATTTTGAATGAGAGCTTAACCGGGAAAACTATGGCGTCTCGGTTCTCATATTTCCAGCTGCACAGACGCCTCTATACAACCACCACCGATCAATGGAGTATCAAGCAAGTTCGCAATTCCAACTTCCATGGCTGCTTGGGGGACCTGAAGAACCATATCTCCGATTCCGACTTCATCGCATTTTTTCTTCAGAGAACGGGTTCTTCTTCTTTCCCTTGGCACCGCCCTCAGCCCTTCGACACTCTCGATACCGCTTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAGTTTTCTCTCTGTCCTTTCTCTGTTAGAGATTCCAAGCTAATCGCCCATCCGTACAACTTTCATTTGTTCCCCAGAGATGAACTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATAGCTCGTGAAGATTTTGACTTTGGTGCTTGGGTATATGATGGTAAGCCTAATTGTGGACAATTTACTTCTGTTTCACCCTCACTAATAGAGGAGAAATTCAAGGAGCTTCGAAATCTTGAAGACGAAGAAAGCAAGAAATTTCGTGGTTTTCGAGAGGTGATAGAGATGATTTCTGCTTCACAGAACCCTATTGTCTCCTACAGTTCTCTTCATGAGTTTACATTTATTCATTCTAAATTCCTTGCTCCCCTGCCTACTAGCATAGATGAGTTTGCATCTTCCTTGCATTTGGTTTTCCCACAAGTGCTTGAGGTAAAGCAATTGATGAGCAAGATTGGTGGCCTCAGTAAGCCGATGAGTATAGCCGCAGCTCTTTCTTACTTGAAAAAACATTATTATGCACCTACTTACTTGGATATCCCAATTGAAGCTCCAGGAAATGATCACAAGCCTCAGGGGCATAATGCTATACGGTTATGCCATTTGTTTGCAAAAGTCTGCTCTCTACTTAAAATTGATCTCAGTGGTGTGTAATCCAACAACAATGAGTGTTTGGCCTCGATGCTCGACGAGTGTTCAAATGTTTCTTCTTCATTCTCCCCTTACCACCACGAACCCAAGGATGAGGACGTTAAGATCTGGGCTCGGGATGTTAGAAAAGCAAGTTGTAGGCATTTGGTTTTCTTGTGGGGATTTAGAGAAGGGATGACGGCTCCGTTTGTAAAAGCTTCACTTGAAGGATCCCATGAAGTTTTATGTGAAGAGTTTTATGTTTGATTCGTGGACAAGGAATGTGCCATTATCGTTTTCTCACAACCAGGCCTATCCGAGACCTTCCTTGATGCAATAAATAGTGATGGCAATGTTGGATCTTTAAGAGAGATGGTATCCGAAGGGATAAGAGCAGCAGGTTATGAAACTTACAAAAGAATGTGTAGGTTTGATTTATGGGAAGCAGATTTAGCTGAGTCCCTGGAGAGAGCCTTTTTCAAAGCCAACCCTGAAACCGCTCAGTTAGATATTTGGCATCCATGATAAAACCTTTTAAGTTTTGGTT

Coding sequence (CDS)

ATGGCGTCTCGGTTCTCATATTTCCAGCTGCACAGACGCCTCTATACAACCACCACCGATCAATGGAGTATCAAGCAAGTTCGCAATTCCAACTTCCATGGCTGCTTGGGGGACCTGAAGAACCATATCTCCGATTCCGACTTCATCGCATTTTTTCTTCAGAGAACGGGTTCTTCTTCTTTCCCTTGGCACCGCCCTCAGCCCTTCGACACTCTCGATACCGCTTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTTCAGTTTTCTCTCTGTCCTTTCTCTGTTAGAGATTCCAAGCTAATCGCCCATCCGTACAACTTTCATTTGTTCCCCAGAGATGAACTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATAGCTCGTGAAGATTTTGACTTTGGTGCTTGGGTATATGATGGTAAGCCTAATTGTGGACAATTTACTTCTGTTTCACCCTCACTAATAGAGGAGAAATTCAAGGAGCTTCGAAATCTTGAAGACGAAGAAAGCAAGAAATTTCGTGGTTTTCGAGAGGTGATAGAGATGATTTCTGCTTCACAGAACCCTATTGTCTCCTACAGTTCTCTTCATGAGTTTACATTTATTCATTCTAAATTCCTTGCTCCCCTGCCTACTAGCATAGATGAGTTTGCATCTTCCTTGCATTTGGTTTTCCCACAAGTGCTTGAGGTAAAGCAATTGATGAGCAAGATTGGTGGCCTCAGTAAGCCGATGAGTATAGCCGCAGCTCTTTCTTACTTGAAAAAACATTATTATGCACCTACTTACTTGGATATCCCAATTGAAGCTCCAGGAAATGATCACAAGCCTCAGGGGCATAATGCTATACGGTTATGCCATTTGTTTGCAAAAGTCTGCTCTCTACTTAAAATTGATCTCAGTGGTGTGTAA

Protein sequence

MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVLEVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLFAKVCSLLKIDLSGV

Homology

[Close]

BLAST of MELO3C027004.1 vs. NCBI nr
Match: XP_016903395.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo])

HSP 1 Score: 649.4 bits (1674), Expect = 1.5e-182
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEE 180
           GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEE
Sbjct: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEE 180

Query: 181 SKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVL 240
           SKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVL
Sbjct: 181 SKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVL 240

Query: 241 EVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLF 300
           EVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLF
Sbjct: 241 EVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLF 300

Query: 301 AKVCSLLKIDLSGV 315
           AKVCSLLKIDLSGV
Sbjct: 301 AKVCSLLKIDLSGV 314

[Close]

BLAST of MELO3C027004.1 vs. NCBI nr
Match: XP_008451634.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo])

HSP 1 Score: 548.9 bits (1413), Expect = 2.8e-152
Identity = 291/418 (69.62%), Postives = 299/418 (71.53%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFH CLGDLKNHISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHSCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDG---------------------KPNCGQFT 180
           GMPSYSFSCQVSHLTSIARE FDFGAWVYDG                      PN     
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDGISYLSRAQESIAKAQMGCQTLTPNTDAVK 180

Query: 181 SVS---------------------------------------------------PSLIEE 240
           S S                                                   PS++ +
Sbjct: 181 SSSEPSVFDTIFVQRVKSRVKNWKDAYDSSSKTNDALLSTLKKLIVGIEQYGSRPSIVID 240

Query: 241 KF--------------------------------KELRNLEDEESKKFRGFREVIEMISA 300
            +                                KEL+NLEDEE+KKFRGFREVIEMISA
Sbjct: 241 VYSERQTLLALEMDLLECAIQLCRTCKLFCVPVQKELQNLEDEENKKFRGFREVIEMISA 300

Query: 301 SQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVLEVKQLMSKIGGLSKPM 315
           SQ PIVSYSSLH+FTFIHSKFLAPLPTSIDEFASSLHLVFP+VLEVK LMSKIGGLSKPM
Sbjct: 301 SQKPIVSYSSLHDFTFIHSKFLAPLPTSIDEFASSLHLVFPRVLEVKHLMSKIGGLSKPM 360

[Close]

BLAST of MELO3C027004.1 vs. NCBI nr
Match: KAA0059619.1 (poly(A)-specific ribonuclease PARN-like [Cucumis melo var. makuwa])

HSP 1 Score: 545.0 bits (1403), Expect = 4.1e-151
Identity = 294/435 (67.59%), Postives = 301/435 (69.20%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDG---------------------KPNCGQFT 180
           GMPSYSFSCQVSHLTSIARE FDFGAWVYDG                      PN     
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDGISYLSRAQESIAKAQMGCQTLTPNTDAVK 180

Query: 181 SVS---------------------------------------------------PSLI-- 240
           S S                                                   PS++  
Sbjct: 181 SSSEPSVFDTIFVQRVKSRVKNWKDAYDSSSKTNDALLSTLKKLIVGIEQYGSRPSIVID 240

Query: 241 --------------------------------------------EEKF---KELRNLEDE 300
                                                       E+K    KEL+NLEDE
Sbjct: 241 VYSERQALLALELLKEFSDDVVPVVISAKSGGTQAIRAILTSSKEDKILLEKELQNLEDE 300

Query: 301 ESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQV 315
           E+KKFRGFREVIEMISASQ PIVSYSSLH+FTFIHSKFLAPLPTSIDEFASSLHLVFP+V
Sbjct: 301 ENKKFRGFREVIEMISASQKPIVSYSSLHDFTFIHSKFLAPLPTSIDEFASSLHLVFPRV 360

[Close]

BLAST of MELO3C027004.1 vs. NCBI nr
Match: TYK08152.1 (poly(A)-specific ribonuclease PARN-like [Cucumis melo var. makuwa])

HSP 1 Score: 536.2 bits (1380), Expect = 1.9e-148
Identity = 293/452 (64.82%), Postives = 300/452 (66.37%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGK---------------------------- 180
           GMPSYSFSCQVSHLTSIARE FDFGAWVYD                              
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDDSTMGLQWLDILQEFFFCPLRAKTAQESIA 180

Query: 181 ----------PNCGQFTSVS---------------------------------------- 240
                     PN     S S                                        
Sbjct: 181 KAQMGCQTLTPNTDAVKSSSEPSVFDTIFVQRVKSRVKNWKDAYDSSSKTNDALLSTLKK 240

Query: 241 -----------PSLI--------------------------------------------- 300
                      PS++                                             
Sbjct: 241 LIVGIEQYGSRPSIVIDVYSERQALLALELLKEFSDDVVPVVISAKSGGTQAIRAILTSS 300

Query: 301 -EEKF---KELRNLEDEESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLP 315
            E+K    KEL+NLEDEE+KKFRGFREVIEMISASQ PIVSYSSLH+FTFIHSKFLAPLP
Sbjct: 301 KEDKILLEKELQNLEDEENKKFRGFREVIEMISASQKPIVSYSSLHDFTFIHSKFLAPLP 360

[Close]

BLAST of MELO3C027004.1 vs. NCBI nr
Match: XP_004148964.1 (poly(A)-specific ribonuclease PARN-like [Cucumis sativus] >KAE8646280.1 hypothetical protein Csa_016030 [Cucumis sativus])

HSP 1 Score: 482.6 bits (1241), Expect = 2.5e-132
Identity = 267/435 (61.38%), Postives = 290/435 (66.67%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTT+ QWS++QVRNSNF G L DLKN ISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTS-QWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHR QPFDT DTAYCKAKYAAEKFQI+QFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDG------------KPNCGQFT--------- 180
           GMPSYSFSCQVSHLTS+ARE FDFGAWVYDG            K   G  T         
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPNINAVK 180

Query: 181 -----SVS----------------------------------------------PSLI-- 240
                SV+                                              PS++  
Sbjct: 181 PSSELSVADTIFVQRVKSRVKNWKDAYDSSSKTSDALLSTLKKLIVGSEQYGSRPSIVID 240

Query: 241 --------------------------------------------EEKF---KELRNLEDE 300
                                                       E+K    KEL+ LED+
Sbjct: 241 VYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLEKELQYLEDK 300

Query: 301 ESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQV 315
           E+KKFRGFREVI++ISASQ PIVSY+SLH+FTFIHSKFLAPLPTSIDE+ASSLH VFP+V
Sbjct: 301 ENKKFRGFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLHSVFPRV 360

[Close]

BLAST of MELO3C027004.1 vs. ExPASy Swiss-Prot
Match: Q8W4C3 (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-67
Identity = 151/425 (35.53%), Postives = 215/425 (50.59%), Query Frame = 0


Query: 16  TTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDTLDTA 75
           T    +WS+KQV+ SNFH  L +++  I  SDFIA  LQ TGS +  WHR    DT  T+
Sbjct: 18  TLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTS 77

Query: 76  YCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLT 135
           Y KAKYAAE++QILQF+LCPFS++ SKL  HPYNFHLFPRDEL  GMPSYSFSCQ S LT
Sbjct: 78  YLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLT 137

Query: 136 SIAREDFDFGAWVYDG-------KPNCGQFTSVSPSLIE--------------------- 195
           ++ARE FDF   +Y+G       + +  +F S +P L +                     
Sbjct: 138 AMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSSPATVADTVFVGRIR 197

Query: 196 ---------------------------------EKF------------------------ 255
                                            E++                        
Sbjct: 198 SRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLT 257

Query: 256 ------------------------------------KELRNLEDEESKKFRGFREVIEMI 315
                                               +EL++LE EE+++ RGFREV++ I
Sbjct: 258 EFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFREVVDFI 317

[Close]

BLAST of MELO3C027004.1 vs. ExPASy Swiss-Prot
Match: Q9LG26 (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-25
Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 17  TTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDTLDTAY 76
           + T  + +K V  SNF   L DL++ +  +DF+A  L+ TG +S PW     FD  D  Y
Sbjct: 31  SATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRY 90

Query: 77  CKAKYAAEKFQILQFSLCPF--SVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHL 136
            K K +AEKF ++QF +CPF    R    +++P+NF +FPR EL    P++ F CQ + +
Sbjct: 91  LKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSM 150

Query: 137 TSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEESKKFRGFREVIEMI 195
             +A+  FDF   +++G       + +S    EE  K L+ L  E+     G  E ++++
Sbjct: 151 DFLAKYQFDFNTCIHEG------ISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLV 204

[Close]

BLAST of MELO3C027004.1 vs. ExPASy Swiss-Prot
Match: Q5R6R6 (Poly(A)-specific ribonuclease PNLDC1 OS=Pongo abelii OX=9601 GN=PNLDC1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 21/65 (32.31%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 185 RGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVLEVKQ 244
           RGF    +M+  +Q P+V ++ + +   +H KF  PLP S D+F  ++H +FP +++ K 
Sbjct: 236 RGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKS 295

Query: 245 LMSKI 250
           +   I
Sbjct: 296 VTKDI 300

[Close]

BLAST of MELO3C027004.1 vs. ExPASy Swiss-Prot
Match: Q8NA58 (Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapiens OX=9606 GN=PNLDC1 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-05
Identity = 21/65 (32.31%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 185 RGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVLEVKQ 244
           RGF    +M+  +Q P+V ++ + +   +H KF  PLP S D+F  ++H +FP +++ K 
Sbjct: 236 RGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKS 295

Query: 245 LMSKI 250
           +   I
Sbjct: 296 VTKDI 300

[Close]

BLAST of MELO3C027004.1 vs. ExPASy Swiss-Prot
Match: B2RXZ1 (Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=10090 GN=Pnldc1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-05
Identity = 21/65 (32.31%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 185 RGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVLEVKQ 244
           RGF    +M+  +Q P+V ++ + +   +H KF  PLP S D+F  ++H +FP +++ K 
Sbjct: 247 RGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKN 306

Query: 245 LMSKI 250
           +   I
Sbjct: 307 VTKDI 311

[Close]

BLAST of MELO3C027004.1 vs. ExPASy TrEMBL
Match: A0A1S4E5Z5 (poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103503081 PE=3 SV=1)

HSP 1 Score: 649.4 bits (1674), Expect = 7.5e-183
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEE 180
           GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEE
Sbjct: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEE 180

Query: 181 SKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVL 240
           SKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVL
Sbjct: 181 SKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVL 240

Query: 241 EVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLF 300
           EVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLF
Sbjct: 241 EVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQGHNAIRLCHLF 300

Query: 301 AKVCSLLKIDLSGV 315
           AKVCSLLKIDLSGV
Sbjct: 301 AKVCSLLKIDLSGV 314

[Close]

BLAST of MELO3C027004.1 vs. ExPASy TrEMBL
Match: A0A1S3BT38 (poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103492866 PE=3 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.4e-152
Identity = 291/418 (69.62%), Postives = 299/418 (71.53%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFH CLGDLKNHISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHSCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDG---------------------KPNCGQFT 180
           GMPSYSFSCQVSHLTSIARE FDFGAWVYDG                      PN     
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDGISYLSRAQESIAKAQMGCQTLTPNTDAVK 180

Query: 181 SVS---------------------------------------------------PSLIEE 240
           S S                                                   PS++ +
Sbjct: 181 SSSEPSVFDTIFVQRVKSRVKNWKDAYDSSSKTNDALLSTLKKLIVGIEQYGSRPSIVID 240

Query: 241 KF--------------------------------KELRNLEDEESKKFRGFREVIEMISA 300
            +                                KEL+NLEDEE+KKFRGFREVIEMISA
Sbjct: 241 VYSERQTLLALEMDLLECAIQLCRTCKLFCVPVQKELQNLEDEENKKFRGFREVIEMISA 300

Query: 301 SQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQVLEVKQLMSKIGGLSKPM 315
           SQ PIVSYSSLH+FTFIHSKFLAPLPTSIDEFASSLHLVFP+VLEVK LMSKIGGLSKPM
Sbjct: 301 SQKPIVSYSSLHDFTFIHSKFLAPLPTSIDEFASSLHLVFPRVLEVKHLMSKIGGLSKPM 360

[Close]

BLAST of MELO3C027004.1 vs. ExPASy TrEMBL
Match: A0A5A7V1F6 (Poly(A)-specific ribonuclease PARN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00470 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 2.0e-151
Identity = 294/435 (67.59%), Postives = 301/435 (69.20%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDG---------------------KPNCGQFT 180
           GMPSYSFSCQVSHLTSIARE FDFGAWVYDG                      PN     
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDGISYLSRAQESIAKAQMGCQTLTPNTDAVK 180

Query: 181 SVS---------------------------------------------------PSLI-- 240
           S S                                                   PS++  
Sbjct: 181 SSSEPSVFDTIFVQRVKSRVKNWKDAYDSSSKTNDALLSTLKKLIVGIEQYGSRPSIVID 240

Query: 241 --------------------------------------------EEKF---KELRNLEDE 300
                                                       E+K    KEL+NLEDE
Sbjct: 241 VYSERQALLALELLKEFSDDVVPVVISAKSGGTQAIRAILTSSKEDKILLEKELQNLEDE 300

Query: 301 ESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFASSLHLVFPQV 315
           E+KKFRGFREVIEMISASQ PIVSYSSLH+FTFIHSKFLAPLPTSIDEFASSLHLVFP+V
Sbjct: 301 ENKKFRGFREVIEMISASQKPIVSYSSLHDFTFIHSKFLAPLPTSIDEFASSLHLVFPRV 360

[Close]

BLAST of MELO3C027004.1 vs. ExPASy TrEMBL
Match: A0A5D3CA51 (Poly(A)-specific ribonuclease PARN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00350 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.3e-149
Identity = 293/452 (64.82%), Postives = 300/452 (66.37%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIA  LQRTGSSS
Sbjct: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIALSLQRTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI
Sbjct: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDGK---------------------------- 180
           GMPSYSFSCQVSHLTSIARE FDFGAWVYD                              
Sbjct: 121 GMPSYSFSCQVSHLTSIAREGFDFGAWVYDDSTMGLQWLDILQEFFFCPLRAKTAQESIA 180

Query: 181 ----------PNCGQFTSVS---------------------------------------- 240
                     PN     S S                                        
Sbjct: 181 KAQMGCQTLTPNTDAVKSSSEPSVFDTIFVQRVKSRVKNWKDAYDSSSKTNDALLSTLKK 240

Query: 241 -----------PSLI--------------------------------------------- 300
                      PS++                                             
Sbjct: 241 LIVGIEQYGSRPSIVIDVYSERQALLALELLKEFSDDVVPVVISAKSGGTQAIRAILTSS 300

Query: 301 -EEKF---KELRNLEDEESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLP 315
            E+K    KEL+NLEDEE+KKFRGFREVIEMISASQ PIVSYSSLH+FTFIHSKFLAPLP
Sbjct: 301 KEDKILLEKELQNLEDEENKKFRGFREVIEMISASQKPIVSYSSLHDFTFIHSKFLAPLP 360

[Close]

BLAST of MELO3C027004.1 vs. ExPASy TrEMBL
Match: A0A6J1GQJ8 (poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456191 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.6e-124
Identity = 240/385 (62.34%), Postives = 275/385 (71.43%), Query Frame = 0


Query: 1   MASRFSYFQLHRRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSS 60
           MASRFS  +L RR   T T+Q S++Q+RN++F+GCLGDLKNHISDSDFIA  LQ TGSSS
Sbjct: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRPQPFDTLDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNI 120
           FPWHR Q FDT DTAYCKAKYAAEKFQILQF+LCPFSVR+SKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSIAREDFDFGAWVYDG----------------------------- 180
           GMPSYSFSCQVSHLTS+ARE FDF A +YDG                             
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 -----------------------KPNCGQF--TSVSP--------------SLIEEKF-- 240
                                  K  C     T+V+P              S  E+K   
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNVNPAKGGGTQAIRAILTSSKEDKILL 240

Query: 241 -KELRNLEDEESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPTSIDEFA 300
            KEL+NLE+EE+KKFRGFREV+++ISASQ PI+SY+SL++F FIHSKFLAPLPT +DEFA
Sbjct: 241 EKELQNLEEEENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFA 300

Query: 301 SSLHLVFPQVLEVKQLMSKIGGLSKPMSIAAALSYLKKHYYAPTYLDIPIEAPGNDHKPQ 315
           SSLHLVFP+VL+VK L+SKIGGLSKP+SIA+ALSYLK HY+AP  LDIP+EA GND K  
Sbjct: 301 SSLHLVFPRVLDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFH 360

[Close]

BLAST of MELO3C027004.1 vs. TAIR 10
Match: AT3G25430.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-68
Identity = 151/425 (35.53%), Postives = 215/425 (50.59%), Query Frame = 0


Query: 16  TTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDTLDTA 75
           T    +WS+KQV+ SNFH  L +++  I  SDFIA  LQ TGS +  WHR    DT  T+
Sbjct: 18  TLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTS 77

Query: 76  YCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLT 135
           Y KAKYAAE++QILQF+LCPFS++ SKL  HPYNFHLFPRDEL  GMPSYSFSCQ S LT
Sbjct: 78  YLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLT 137

Query: 136 SIAREDFDFGAWVYDG-------KPNCGQFTSVSPSLIE--------------------- 195
           ++ARE FDF   +Y+G       + +  +F S +P L +                     
Sbjct: 138 AMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSSPATVADTVFVGRIR 197

Query: 196 ---------------------------------EKF------------------------ 255
                                            E++                        
Sbjct: 198 SRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLT 257

Query: 256 ------------------------------------KELRNLEDEESKKFRGFREVIEMI 315
                                               +EL++LE EE+++ RGFREV++ I
Sbjct: 258 EFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFREVVDFI 317

[Close]

BLAST of MELO3C027004.1 vs. TAIR 10
Match: AT1G55870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-26
Identity = 60/180 (33.33%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 17  TTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDTLDTAY 76
           + T  + +K V  SNF   L DL++ +  +DF+A  L+ TG +S PW     FD  D  Y
Sbjct: 31  SATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRY 90

Query: 77  CKAKYAAEKFQILQFSLCPF--SVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHL 136
            K K +AEKF ++QF +CPF    R    +++P+NF +FPR EL    P++ F CQ + +
Sbjct: 91  LKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSM 150

Query: 137 TSIAREDFDFGAWVYDGKPNCGQFTSVSPSLIEEKFKELRNLEDEESKKFRGFREVIEMI 195
             +A+  FDF   +++G       + +S    EE  K L+ L  E+     G  E ++++
Sbjct: 151 DFLAKYQFDFNTCIHEG------ISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLV 204

[Close]

BLAST of MELO3C027004.1 vs. TAIR 10
Match: AT1G55870.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 7.8e-07
Identity = 23/84 (27.38%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 164 SLIEEKFKELRNLEDEESKKFRGFREVIEMISASQNPIVSYSSLHEFTFIHSKFLAPLPT 223
           +L++E   E + L + + +   GFR+VI+++++ +  IV ++   +   ++SKF+ PLP+
Sbjct: 160 NLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPS 219

Query: 224 SIDEFASSLHLVFPQVLEVKQLMS 248
           + ++F +S++  FP +++ K L++
Sbjct: 220 TAEKFVASINSHFPYIVDTKILLN 243

The following BLAST results are available for this feature:

BLAST of MELO3C027004.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903395.1	1.5e-182	100.00	PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo]	[more]
XP_008451634.1	2.8e-152	69.62	PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo]	[more]
KAA0059619.1	4.1e-151	67.59	poly(A)-specific ribonuclease PARN-like [Cucumis melo var. makuwa]	[more]
TYK08152.1	1.9e-148	64.82	poly(A)-specific ribonuclease PARN-like [Cucumis melo var. makuwa]	[more]
XP_004148964.1	2.5e-132	61.38	poly(A)-specific ribonuclease PARN-like [Cucumis sativus] >KAE8646280.1 hypothet...	[more]

BLAST of MELO3C027004.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4C3	2.2e-67	35.53	Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g2...	[more]
Q9LG26	3.6e-25	33.33	Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 ...	[more]
Q5R6R6	1.1e-05	32.31	Poly(A)-specific ribonuclease PNLDC1 OS=Pongo abelii OX=9601 GN=PNLDC1 PE=2 SV=1	[more]
Q8NA58	1.4e-05	32.31	Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapiens OX=9606 GN=PNLDC1 PE=1 SV=2	[more]
B2RXZ1	1.4e-05	32.31	Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=10090 GN=Pnldc1 PE=1 SV=...	[more]

BLAST of MELO3C027004.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5Z5	7.5e-183	100.00	poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103503081 ...	[more]
A0A1S3BT38	1.4e-152	69.62	poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103492866 ...	[more]
A0A5A7V1F6	2.0e-151	67.59	Poly(A)-specific ribonuclease PARN-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CA51	9.3e-149	64.82	Poly(A)-specific ribonuclease PARN-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1GQJ8	1.6e-124	62.34	poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita moschata OX=3662...	[more]

BLAST of MELO3C027004.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25430.1	1.6e-68	35.53	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.1	2.6e-26	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.2	7.8e-07	27.38	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 27..268 e-value: 2.4E-42 score: 145.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 26..312 e-value: 1.2E-48 score: 167.8
None	No IPR available	PANTHER	PTHR15092:SF42	POLY(A)-SPECIFIC RIBONUCLEASE PARN-LIKE	coord: 16..152 coord: 171..310
None	No IPR available	PANTHER	PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	coord: 16..152 coord: 171..310
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 24..310

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C027004	MELO3C027004	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C027004.1:exon:29773	MELO3C027004.1:exon:29773	exon
MELO3C027004.1:exon:29772	MELO3C027004.1:exon:29772	exon
MELO3C027004.1:exon:29771	MELO3C027004.1:exon:29771	exon
MELO3C027004.1:exon:29770	MELO3C027004.1:exon:29770	exon
MELO3C027004.1:exon:29769	MELO3C027004.1:exon:29769	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C027004.1:three_prime_utr	MELO3C027004.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C027004.1:cds	MELO3C027004.1:cds	CDS
MELO3C027004.1:cds	MELO3C027004.1:cds_2	CDS
MELO3C027004.1:cds	MELO3C027004.1:cds_3	CDS
MELO3C027004.1:cds	MELO3C027004.1:cds_4	CDS
MELO3C027004.1:cds	MELO3C027004.1:cds_5	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C027004.1:five_prime_utr	MELO3C027004.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C027004.1	MELO3C027004.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding