MELO3C026305.jh1.t2 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C026305.jh1.t2
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	chr07: 11233116 .. 11234413 (+)
Sequence length	469
RNA-Seq Expression	MELO3C026305.jh1.t2
Synteny	MELO3C026305.jh1.t2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAACTAAGTACTTTTATCAAACTGTTGTCTTCCAATGGGACGTTGGATGAAACCAGAGGTCAGCCCCCAAACTTGTTTCTCTATTTCTATGCTTTCTGTCCTTCAGTATTTACCTAAAACGACCAGCGTTTCACTACTAATTAATACATAATTTCAAATCTAATCATTATTAAACAAAACCTAAACCTTATGCTTCAATCTTTTATTTCTTCTATGAATTTACTTTTAAAAATGTAACTCTAATACATACTCAAACAACATCCAATTTTATGTTTTATACATCTTTGTCATATTAAAAATTAACAATTAAAAGTTTATAGTTAGATATAGAAGTGATTTTATGTTTTGATGGCCATGGAATTCTCAACTTGAATATTGTATTTAGCACATCTTTAGTTTTTTTTTTTTTTTTCAAATTTATTGAAAAGATTAAGAGACTGTCAGGTAGAAAATAGAAAATGGAGAGATGCATAGATCAGTAACACAAACCATCACACAGTAATGTTGATGGGTTAATTAAGAGATGGCGTTAACGGTGAATTGTGGAGGTGGGATAGAATTTAGTATATAAAACAGTAATTAATTGATTTATTAAATAAAAGAAAAAGGGTTTTGATATTAATGTAAATTAATCGGTAAATTGAAGGTTTATCCATTATTGGCGGCGATGGGATTTGTGACAAGTATGTGCGTCTTTCAACTTACTCGAAACATTCTCATTAATCCTGACGTTCGGTATTCCTTATTTTCTATTCTATTCTACTACTTTCCTTATAATAATTATTAGGATTGTTTTTTCATCATTAATGAATTGATATATATGATTTTAAGTATTGAATTGGTTAATAAAATAAACAAAGTTAACAATAATAATAATAAAGAAAAATGATTTTAAAAGATAAAATATTTACCAATTTACAAAATCATTACCCCATATAAAAAAAGAAGTAAAAAGAAATGTGTTTTGTATTTGTAGAGTGAACAAAGCGCATCGTAGAATGGGGGTATTGGAGAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCGCTATTTTTCTCAAGACAAATAAATAATTTCAATTAACACACACTTTCACTTTCTCCCATTTTCCTTTTATTATATTCCTTTTACACACTCTCTACTTTCTGTTTGCCCTTTGCTTTACGTCCCTTTTTGTCTTAGATAAATGTAAGGTGGCTTTGCCCACACATTGGGGAATAATAACAATTATAGTATGTTCA

mRNA sequence

AGGAACTAAGTACTTTTATCAAACTGTTGTCTTCCAATGGGACGTTGGATGAAACCAGAGGTTTATCCATTATTGGCGGCGATGGGATTTGTGACAAGTATGTGCGTCTTTCAACTTACTCGAAACATTCTCATTAATCCTGACGTTCGAGTGAACAAAGCGCATCGTAGAATGGGGGTATTGGAGAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCGCTATTTTTCTCAAGACAAATAAATAATTTCAATTAACACACACTTTCACTTTCTCCCATTTTCCTTTTATTATATTCCTTTTACACACTCTCTACTTTCTGTTTGCCCTTTGCTTTACGTCCCTTTTTGTCTTAGATAAATGTAAGGTGGCTTTGCCCACACATTGGGGAATAATAACAATTATAGTATGTTCA

Coding sequence (CDS)

ATGGGACGTTGGATGAAACCAGAGGTTTATCCATTATTGGCGGCGATGGGATTTGTGACAAGTATGTGCGTCTTTCAACTTACTCGAAACATTCTCATTAATCCTGACGTTCGAGTGAACAAAGCGCATCGTAGAATGGGGGTATTGGAGAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCGCTATTTTTCTCAAGACAAATAA

Protein sequence

MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSEHSLRRFLRTRPPEIMPTINRYFSQDK

Homology

[Close]

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr
Match: XP_008464582.1 (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 177 bits (449), Expect = 5.24e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMPTINRYFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr
Match: XP_038883437.1 (uncharacterized protein LOC120074394 [Benincasa hispida])

HSP 1 Score: 168 bits (426), Expect = 1.70e-52
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRW+KPEVYPLLAAMGFVTSMCVFQLTRNI+INPDVRVNKAHR+MGVLENEEEGEKYSE
Sbjct: 1  MGRWIKPEVYPLLAAMGFVTSMCVFQLTRNIMINPDVRVNKAHRKMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMP IN +FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPNINHFFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr
Match: XP_004137261.1 (uncharacterized protein LOC101217963 isoform X1 [Cucumis sativus] >KAE8649331.1 hypothetical protein Csa_014918 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 5.01e-52
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVT+MC+FQLTRNILINPDVRV K+HRRMGVL+NEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQD 85
          HSLRRFLRTRPPEIMPTIN YFSQD
Sbjct: 61 HSLRRFLRTRPPEIMPTINHYFSQD 85

[Close]

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr
Match: XP_022980760.1 (uncharacterized protein LOC111480034 [Cucurbita maxima])

HSP 1 Score: 167 bits (422), Expect = 6.91e-52
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQLTRNILINPDVRVNK HRRMGVLENEEEGEKY+E
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMPTINR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr
Match: XP_022955974.1 (uncharacterized protein LOC111457808 [Cucurbita moschata])

HSP 1 Score: 164 bits (414), Expect = 1.15e-50
Identity = 77/86 (89.53%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          M RW+KPEVYPL+AAMGFVT++CVFQLTRNILINPDVRVNK HRRMGVLENEEEGEKY+E
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMP INR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. ExPASy TrEMBL
Match: A0A1S3CLU5 (uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 2.53e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMPTINRYFSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1IXF3 (uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 3.35e-52
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          M RW+KPEVYPL+AAMGFVT+MCVFQLTRNILINPDVRVNK HRRMGVLENEEEGEKY+E
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMPTINR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1GXR5 (uncharacterized protein LOC111457808 OS=Cucurbita moschata OX=3662 GN=LOC111457808 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 5.56e-51
Identity = 77/86 (89.53%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          M RW+KPEVYPL+AAMGFVT++CVFQLTRNILINPDVRVNK HRRMGVLENEEEGEKY+E
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          HSLRRFLRTRPPEIMP INR+FSQDK
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1DLE5 (uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022208 PE=4 SV=1)

HSP 1 Score: 160 bits (405), Expect = 1.31e-49
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNIL+NPDVRVNK  R MGVLEN EEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          H LRRFLRTRPPEIMPTIN +FSQDK
Sbjct: 61 HRLRRFLRTRPPEIMPTINHFFSQDK 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. ExPASy TrEMBL
Match: A0A067JNC6 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25584 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 4.41e-48
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVTSMCVFQLTRN+ +NPDVR+NKAHRRM VLENE+EGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNVFLNPDVRINKAHRRMAVLENEDEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQDK 86
          H LR+FLRTRPPE+MP IN +FSQD+
Sbjct: 61 HGLRKFLRTRPPEVMPAINHFFSQDE 86

[Close]

BLAST of MELO3C026305.jh1.t2 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-33
Identity = 58/85 (68.24%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60
          MGRW++PEVYPLL AMGFVTSM VFQLTRN  +NPD R+NK HR+MG+LEN++EGEKY++
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 61 HSLRRFLRTRPPEIMPTINRYFSQD 86
          H+ R++LRTR P++MP++NR+FSQ+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFSQE 85

[Close]

BLAST of MELO3C026305.jh1.t2 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-21
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 3  RWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSEHS 62
          RW++PEVYPL AA G    +C F L RNI  NP+VR  K +R  G+L+N  EGEKY E+ 
Sbjct: 4  RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query: 63 LRRFLRTRPPEIMPTINRYFS 84
          LR+F+R + PEIMP +N++F+
Sbjct: 64 LRKFVRNKKPEIMPGLNKFFT 84

The following BLAST results are available for this feature:

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464582.1	5.24e-56	100.00	PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo]	[more]
XP_038883437.1	1.70e-52	93.02	uncharacterized protein LOC120074394 [Benincasa hispida]	[more]
XP_004137261.1	5.01e-52	92.94	uncharacterized protein LOC101217963 isoform X1 [Cucumis sativus] >KAE8649331.1 ...	[more]
XP_022980760.1	6.91e-52	91.86	uncharacterized protein LOC111480034 [Cucurbita maxima]	[more]
XP_022955974.1	1.15e-50	89.53	uncharacterized protein LOC111457808 [Cucurbita moschata]	[more]

BLAST of MELO3C026305.jh1.t2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C026305.jh1.t2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CLU5	2.53e-56	100.00	uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=...	[more]
A0A6J1IXF3	3.35e-52	91.86	uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034...	[more]
A0A6J1GXR5	5.56e-51	89.53	uncharacterized protein LOC111457808 OS=Cucurbita moschata OX=3662 GN=LOC1114578...	[more]
A0A6J1DLE5	1.31e-49	89.53	uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A067JNC6	4.41e-48	82.56	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25584 PE=4 SV=1	[more]

BLAST of MELO3C026305.jh1.t2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29970.1	1.7e-33	68.24	B12D protein	[more]
AT3G48140.1	1.5e-21	53.09	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 6..73 e-value: 4.2E-25 score: 87.3
None	No IPR available	PANTHER	PTHR33417:SF19	SUBFAMILY NOT NAMED	coord: 1..86
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 1..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026305.jh1	MELO3C026305.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026305.jh1.t2.exon	MELO3C026305.jh1.t2.exon	exon
MELO3C026305.jh1.t2.exon	MELO3C026305.jh1.t2.exon_2	exon
MELO3C026305.jh1.t2.exon	MELO3C026305.jh1.t2.exon_3	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026305.jh1.t2.start_codon	MELO3C026305.jh1.t2.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026305.jh1.t2.cds	MELO3C026305.jh1.t2.cds	CDS
MELO3C026305.jh1.t2.cds	MELO3C026305.jh1.t2.cds_2	CDS
MELO3C026305.jh1.t2.cds	MELO3C026305.jh1.t2.cds_3	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026305.jh1.t2.stop_codon	MELO3C026305.jh1.t2.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026305.jh1.t2	MELO3C026305.jh1.t2-protein	polypeptide