MELO3C023670.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C023670.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RING-H2 finger protein ATL66
Location	chr01: 7121958 .. 7122260 (+)
Sequence length	303
RNA-Seq Expression	MELO3C023670.1
Synteny	MELO3C023670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTATGTATTTGGGAAAGATCGGAGACGATGTGGGGTCGAATGTGTCGAAGGGTACAATGGATTTCCCACTAACGATGGAAATGATATGGAGATCCCTATGATGTATAGTTGGGGACTAAACATGTCGCCTGACGACACCATGGGGACACATGGTCGCTCAAGTGAGGGTAGGAATGGTTCAATCGGGTCCAGGAGGAAGCAGGGAGGCCAAACGGTAGAAACTGTGAAAATCATTTGCAATGCAATGGAATATGCAAATGACCAGTTGAAGGACATTGCAGAATGGCCGAATTTATAA

mRNA sequence

ATGTGCTATGTATTTGGGAAAGATCGGAGACGATGTGGGGTCGAATGTGTCGAAGGGTACAATGGATTTCCCACTAACGATGGAAATGATATGGAGATCCCTATGATGTATAGTTGGGGACTAAACATGTCGCCTGACGACACCATGGGGACACATGGTCGCTCAAGTGAGGGTAGGAATGGTTCAATCGGGTCCAGGAGGAAGCAGGGAGGCCAAACGGTAGAAACTGTGAAAATCATTTGCAATGCAATGGAATATGCAAATGACCAGTTGAAGGACATTGCAGAATGGCCGAATTTATAA

Coding sequence (CDS)

ATGTGCTATGTATTTGGGAAAGATCGGAGACGATGTGGGGTCGAATGTGTCGAAGGGTACAATGGATTTCCCACTAACGATGGAAATGATATGGAGATCCCTATGATGTATAGTTGGGGACTAAACATGTCGCCTGACGACACCATGGGGACACATGGTCGCTCAAGTGAGGGTAGGAATGGTTCAATCGGGTCCAGGAGGAAGCAGGGAGGCCAAACGGTAGAAACTGTGAAAATCATTTGCAATGCAATGGAATATGCAAATGACCAGTTGAAGGACATTGCAGAATGGCCGAATTTATAA

Protein sequence

MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTHGRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWPNL

Homology

[Close]

BLAST of MELO3C023670.1 vs. NCBI nr
Match: KAA0061292.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYK09869.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 3.8e-50
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTHGRSSEGRN 60
           MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEI MMYSWGLNMSPDDTMGTHGRSSEGRN
Sbjct: 1   MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEIHMMYSWGLNMSPDDTMGTHGRSSEGRN 60

Query: 61  GSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWPNL 101
           GSIGS+RKQG QTVETVKIICNAMEYANDQLKDIAEW NL
Sbjct: 61  GSIGSKRKQGDQTVETVKIICNAMEYANDQLKDIAEWSNL 100

[Close]

BLAST of MELO3C023670.1 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  EGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVET 77
           EGY GF  +DGNDMEIPMMYS G++M  DD MGT   RS+EGR GS GS+RKQGGQ VET
Sbjct: 17  EGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVET 76

Query: 78  VKIICNAMEYANDQLKDIAEWPNL 101
           ++II N ME++ND+LK I EW N+
Sbjct: 77  MEIIRNVMEHSNDRLKAIVEWLNV 100

[Close]

BLAST of MELO3C023670.1 vs. NCBI nr
Match: KAA0056167.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 1   MCYVFGKDRR---------RCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGT 60
           +CYVFG+D             G   + GY GF  NDGND+EIP MYS GL+MS DD MGT
Sbjct: 261 LCYVFGRDHGTGGHVETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGT 320

Query: 61  HGR-SSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAE 97
             R +S+GRN S  S+RK  GQTVETVKII N++EY NDQL  I +
Sbjct: 321 RPRQASDGRNASSRSKRKWVGQTVETVKIIYNSIEYTNDQLYHIVD 366

[Close]

BLAST of MELO3C023670.1 vs. NCBI nr
Match: TYK08370.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 6.5e-18
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 19  GYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVETV 78
           GY GF  +DGN++EIP MYS GL+MS DD MGT   R+S+GRN S GS+RKQG Q VET 
Sbjct: 182 GYEGFTNDDGNNIEIPTMYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETT 241

Query: 79  KIICNAMEYANDQLKDIAEW 98
           KII +AMEYAN+ L  IA+W
Sbjct: 242 KIIRSAMEYANNHLNHIADW 261

[Close]

BLAST of MELO3C023670.1 vs. NCBI nr
Match: KAA0047716.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 6.5e-18
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 19  GYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVETV 78
           GY GF  +DGN++EIP MYS GL+MS DD MGT   R+S+GRN S GS+RKQG Q VET 
Sbjct: 135 GYEGFTNDDGNNIEIPTMYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETT 194

Query: 79  KIICNAMEYANDQLKDIAEW 98
           KII +AMEYAN+ L  IA+W
Sbjct: 195 KIIRSAMEYANNHLNHIADW 214

[Close]

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL
Match: A0A5A7UZF5 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00380 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTHGRSSEGRN 60
           MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEI MMYSWGLNMSPDDTMGTHGRSSEGRN
Sbjct: 1   MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEIHMMYSWGLNMSPDDTMGTHGRSSEGRN 60

Query: 61  GSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWPNL 101
           GSIGS+RKQG QTVETVKIICNAMEYANDQLKDIAEW NL
Sbjct: 61  GSIGSKRKQGDQTVETVKIICNAMEYANDQLKDIAEWSNL 100

[Close]

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  EGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVET 77
           EGY GF  +DGNDMEIPMMYS G++M  DD MGT   RS+EGR GS GS+RKQGGQ VET
Sbjct: 17  EGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVET 76

Query: 78  VKIICNAMEYANDQLKDIAEWPNL 101
           ++II N ME++ND+LK I EW N+
Sbjct: 77  MEIIRNVMEHSNDRLKAIVEWLNV 100

[Close]

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL
Match: A0A5A7UNI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00630 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 1   MCYVFGKDRR---------RCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGT 60
           +CYVFG+D             G   + GY GF  NDGND+EIP MYS GL+MS DD MGT
Sbjct: 261 LCYVFGRDHGTGGHVETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGT 320

Query: 61  HGR-SSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAE 97
             R +S+GRN S  S+RK  GQTVETVKII N++EY NDQL  I +
Sbjct: 321 RPRQASDGRNASSRSKRKWVGQTVETVKIIYNSIEYTNDQLYHIVD 366

[Close]

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL
Match: A0A5D3CAJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001830 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.2e-18
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 19  GYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVETV 78
           GY GF  +DGN++EIP MYS GL+MS DD MGT   R+S+GRN S GS+RKQG Q VET 
Sbjct: 182 GYEGFTNDDGNNIEIPTMYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETT 241

Query: 79  KIICNAMEYANDQLKDIAEW 98
           KII +AMEYAN+ L  IA+W
Sbjct: 242 KIIRSAMEYANNHLNHIADW 261

[Close]

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL
Match: A0A5A7U0G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002300 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.2e-18
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 19  GYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVETV 78
           GY GF  +DGN++EIP MYS GL+MS DD MGT   R+S+GRN S GS+RKQG Q VET 
Sbjct: 135 GYEGFTNDDGNNIEIPTMYSQGLDMSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETT 194

Query: 79  KIICNAMEYANDQLKDIAEW 98
           KII +AMEYAN+ L  IA+W
Sbjct: 195 KIIRSAMEYANNHLNHIADW 214

The following BLAST results are available for this feature:

BLAST of MELO3C023670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061292.1	3.8e-50	96.00	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYK09869.1 RING-H2 fing...	[more]
KAA0060529.1	3.7e-21	65.48	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
KAA0056167.1	2.7e-19	54.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK08370.1	6.5e-18	63.75	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047716.1	6.5e-18	63.75	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C023670.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZF5	1.8e-50	96.00	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V469	1.8e-21	65.48	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UNI7	1.3e-19	54.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CAJ4	3.2e-18	63.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0G0	3.2e-18	63.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C023670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023670	MELO3C023670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023670.1:exon:6909	MELO3C023670.1:exon:6909	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023670.1:cds	MELO3C023670.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C023670.1	MELO3C023670.1-protein	polypeptide