MELO3C022543.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C022543.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr10: 14402583 .. 14402957 (-)
Sequence length375
RNA-Seq ExpressionMELO3C022543.1
SyntenyMELO3C022543.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATAGGGAAAAGGTCTCTTTTAGCGTAGAGACTATTAACAAAATACATGGACTCCCAAACGATGAGGTGGAAGCATACCTTGGCCACCAACTGATCAACGCGCCTACTCAAGGTTTCGCAAGGATAATGTTAAAAAAGATCGTGTGGCTAGACGCTGAGTGGAAGAAGATACCTATGGGGAGGTTGCAACTCTACCCGCATCAACTTACAACTGAATCCAACGTTTGGCTTTTCTTTATAAAGAAGAAAATTCTTCCCACAAGGCATGATAGTGCGATGCCGTTTGACTACGCGATGCTTCTCTACTCCATCCTCATGAAGCAAGCGTTCAACTTAGGCTATTTAATGCAAGGGGCACTTTTCGCTTAG

mRNA sequence

ATGGTGGATAGGGAAAAGGTCTCTTTTAGCGTAGAGACTATTAACAAAATACATGGACTCCCAAACGATGAGGTGGAAGCATACCTTGGCCACCAACTGATCAACGCGCCTACTCAAGGTTTCGCAAGGATAATGTTAAAAAAGATCGTGTGGCTAGACGCTGAGTGGAAGAAGATACCTATGGGGAGGTTGCAACTCTACCCGCATCAACTTACAACTGAATCCAACGTTTGGCTTTTCTTTATAAAGAAGAAAATTCTTCCCACAAGGCATGATAGTGCGATGCCGTTTGACTACGCGATGCTTCTCTACTCCATCCTCATGAAGCAAGCGTTCAACTTAGGCTATTTAATGCAAGGGGCACTTTTCGCTTAG

Coding sequence (CDS)

ATGGTGGATAGGGAAAAGGTCTCTTTTAGCGTAGAGACTATTAACAAAATACATGGACTCCCAAACGATGAGGTGGAAGCATACCTTGGCCACCAACTGATCAACGCGCCTACTCAAGGTTTCGCAAGGATAATGTTAAAAAAGATCGTGTGGCTAGACGCTGAGTGGAAGAAGATACCTATGGGGAGGTTGCAACTCTACCCGCATCAACTTACAACTGAATCCAACGTTTGGCTTTTCTTTATAAAGAAGAAAATTCTTCCCACAAGGCATGATAGTGCGATGCCGTTTGACTACGCGATGCTTCTCTACTCCATCCTCATGAAGCAAGCGTTCAACTTAGGCTATTTAATGCAAGGGGCACTTTTCGCTTAG

Protein sequence

MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIPMGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQGALFA
Homology
[Close]
BLAST of MELO3C022543.1 vs. NCBI nr
Match: TYK22187.1 (hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 8.6e-28
Identity = 63/121 (52.07%), Postives = 89/121 (73.55%), Query Frame = 0 

Query: 1   MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIP 60
           +V+R+KVSF++E IN+++GL ND +++Y    LI  PT+G +R++++ I WL A W +  
Sbjct: 19  IVERKKVSFTMEEINELYGLLND-LDSYPSQSLIAEPTKGDSRMIIQLIAWLGAGWTRTT 78

Query: 61  MGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQG 120
              LQLYPHQLTTE+NVWL FIKKKI+P  +DS +P +Y +LLY  + KQ FNLGY+M  
Sbjct: 79  TRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMAKQPFNLGYMMNE 138

Query: 121 A 122
           A
Sbjct: 139 A 138

[Close]
BLAST of MELO3C022543.1 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 1    MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIP 60
            +V+ EKV F+ E IN+++ LPND + AY G +LI    +G A+ ++K IVW +A+    P
Sbjct: 1226 IVEDEKVPFTTEEINELYDLPND-LGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTP 1285

Query: 61   MGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQG 120
              RLQL+PHQLT E+NVWLFFIKKKI PT HDS +  +YA++LY I  K+ FNLGY+M  
Sbjct: 1286 TRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNE 1345

Query: 121  ALFA 125
            A  +
Sbjct: 1346 AFLS 1348

[Close]
BLAST of MELO3C022543.1 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 1   MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIP 60
           +V+ EKV F+ E IN+++ LPND + AY G +LI    +G A+ ++K IVW +A+    P
Sbjct: 65  IVEDEKVPFTTEEINELYDLPND-LGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTP 124

Query: 61  MGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQG 120
             RLQL+PHQLT E+NVWLFFIKKKI PT HDS +  +YA++LY I  K+ FNLGY+M  
Sbjct: 125 TRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNE 184

Query: 121 ALFA 125
           A  +
Sbjct: 185 AFLS 187

[Close]
BLAST of MELO3C022543.1 vs. NCBI nr
Match: TYK09554.1 (hypothetical protein E5676_scaffold757G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1  MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKI- 60
          MV+REKV+F  E IN+++GLP D+ +AY  HQLIN PT+G  R ML  I W   +W+ + 
Sbjct: 1  MVEREKVAFRAEAINELYGLP-DKEDAYPCHQLINKPTEGLVRRMLGVIAWPCVDWESLA 60

Query: 61 ----PMGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSA 95
                 +LQLYPHQLT E++VWLFFIK KILP  HD A
Sbjct: 61 NVYHATVKLQLYPHQLTIEASVWLFFIKIKILPMHHDEA 98

[Close]
BLAST of MELO3C022543.1 vs. NCBI nr
Match: KAA0067453.1 (hypothetical protein E6C27_scaffold40G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-20
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1  MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKI- 60
          MV+REKV+F  E IN+++GLP D+ +AY  HQLIN PT+G  R ML  I W   +W+ + 
Sbjct: 1  MVEREKVAFRAEAINELYGLP-DKEDAYPCHQLINKPTKGLVRRMLGVIAWPCVDWESLA 60

Query: 61 ----PMGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSA 95
                 +LQLYPHQLT E+++WLFFIK KILP  HD A
Sbjct: 61 NVYHATVKLQLYPHQLTIEASIWLFFIKIKILPMHHDEA 98

[Close]
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match: A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.2e-28
Identity = 63/121 (52.07%), Postives = 89/121 (73.55%), Query Frame = 0 

Query: 1   MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIP 60
           +V+R+KVSF++E IN+++GL ND +++Y    LI  PT+G +R++++ I WL A W +  
Sbjct: 19  IVERKKVSFTMEEINELYGLLND-LDSYPSQSLIAEPTKGDSRMIIQLIAWLGAGWTRTT 78

Query: 61  MGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQG 120
              LQLYPHQLTTE+NVWL FIKKKI+P  +DS +P +Y +LLY  + KQ FNLGY+M  
Sbjct: 79  TRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMAKQPFNLGYMMNE 138

Query: 121 A 122
           A
Sbjct: 139 A 138

[Close]
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.7e-26
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 1    MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIP 60
            +V+ EKV F+ E IN+++ LPND + AY G +LI    +G A+ ++K IVW +A+    P
Sbjct: 1226 IVEDEKVPFTTEEINELYDLPND-LGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTP 1285

Query: 61   MGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQG 120
              RLQL+PHQLT E+NVWLFFIKKKI PT HDS +  +YA++LY I  K+ FNLGY+M  
Sbjct: 1286 TRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNE 1345

Query: 121  ALFA 125
            A  +
Sbjct: 1346 AFLS 1348

[Close]
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.7e-26
Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 0 

Query: 1   MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKIP 60
           +V+ EKV F+ E IN+++ LPND + AY G +LI    +G A+ ++K IVW +A+    P
Sbjct: 65  IVEDEKVPFTTEEINELYDLPND-LGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTP 124

Query: 61  MGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSAMPFDYAMLLYSILMKQAFNLGYLMQG 120
             RLQL+PHQLT E+NVWLFFIKKKI PT HDS +  +YA++LY I  K+ FNLGY+M  
Sbjct: 125 TRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNE 184

Query: 121 ALFA 125
           A  +
Sbjct: 185 AFLS 187

[Close]
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match: A0A5D3CEC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00370 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1  MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKI- 60
          MV+REKV+F  E IN+++GLP D+ +AY  HQLIN PT+G  R ML  I W   +W+ + 
Sbjct: 1  MVEREKVAFRAEAINELYGLP-DKEDAYPCHQLINKPTEGLVRRMLGVIAWPCVDWESLA 60

Query: 61 ----PMGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSA 95
                 +LQLYPHQLT E++VWLFFIK KILP  HD A
Sbjct: 61 NVYHATVKLQLYPHQLTIEASVWLFFIKIKILPMHHDEA 98

[Close]
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match: A0A5A7VH86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001190 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1  MVDREKVSFSVETINKIHGLPNDEVEAYLGHQLINAPTQGFARIMLKKIVWLDAEWKKI- 60
          MV+REKV+F  E IN+++GLP D+ +AY  HQLIN PT+G  R ML  I W   +W+ + 
Sbjct: 1  MVEREKVAFRAEAINELYGLP-DKEDAYPCHQLINKPTKGLVRRMLGVIAWPCVDWESLA 60

Query: 61 ----PMGRLQLYPHQLTTESNVWLFFIKKKILPTRHDSA 95
                 +LQLYPHQLT E+++WLFFIK KILP  HD A
Sbjct: 61 NVYHATVKLQLYPHQLTIEASIWLFFIKIKILPMHHDEA 98

The following BLAST results are available for this feature:
BLAST of MELO3C022543.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22187.18.6e-2852.07hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa][more]
KAA0049609.11.4e-2551.61transposase [Cucumis melo var. makuwa][more]
TYK15967.11.4e-2551.61hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa][more]
TYK09554.15.1e-2054.55hypothetical protein E5676_scaffold757G00370 [Cucumis melo var. makuwa][more]
KAA0067453.18.7e-2053.54hypothetical protein E6C27_scaffold40G001190 [Cucumis melo var. makuwa][more]
BLAST of MELO3C022543.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DES74.2e-2852.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U8066.7e-2651.61Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE... [more]
A0A5D3CVL76.7e-2651.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CEC62.5e-2054.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VH864.2e-2053.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C022543.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C022543MELO3C022543gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C022543.1:exon:294819MELO3C022543.1:exon:294819exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C022543.1:cdsMELO3C022543.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C022543.1MELO3C022543.1-proteinpolypeptide