MELO3C022482.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C022482.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	upstream activation factor subunit spp27-like
Location	chr11: 33973443 .. 33975602 (-)
Sequence length	1625
RNA-Seq Expression	MELO3C022482.jh1.t1
Synteny	MELO3C022482.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAAAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAATCGAAAGCCGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGGTTAACTTTATTTCTCTTTTGTTCTAACCGATATGGCTATTTTTTAAGTATCGCTTTTCTACTTCCTTCTTTGCTGCAATCTCTTCGTTTGCTTTGTTATTTTAACTTAGCCTAGAACTTGAGGATTTGGGTGTTGTGTTCATTCGTAGTGTATCAAATGTTAGTTCTCTGTGAGCCGAATCTCTCTTTCAGACCTCAGTTGCTCAACTGAAGGTCTCTGGAATGGATGTTCTGAATTTGAAAACTAGGTTAAAGTATAGGTGGTGAACCCTACTATTCTTGAATCAAATAATCTATATACCTGTTCGCAAGTTTCGGTGAATGCATTCATTCAGCAGTGTTGTTTAAAGGATTTTGCTACTGTGTGACGTTTTCTTTTCACATGGATTCGGGTTTGAGCTCTGCTTTGAAAAAGTTAGCTGCTACATAGAGCTGGGAGGGAGAAATTAGAATTTAACGTAGTATTGATTTCTTTTTTGGGAATTTGGAAGATTTTGCTGATTGATACACATGTATATAACATTTTGATGTGCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAATACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCGCCATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGAACCTTTTTCAGAATTCGTAGTTTTTTCTAGTCCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGATAGAAGTTTTTCCTATTTCATATATACATAGATACATTTTGGAGAAGTAATGATCGTTGTGGACTTAAAAATTGATATTCGTTGAGGTAAATGCAATTTATTGGTAGGTTGAATGTGGTAATTGTAATTATTAATGTTAACTTAGCTCAATAATTTCATTTCTACAATCAGTTGAAAAGATGGTAAATGTAATTTAACGTTAACGTGTAAATGTAATTTATTACTTGAATACTTAAAATTTCAATTATGTGCAAGATCTTGAAGAAAATTATGTTTCTAAGTTGATATGCCAAGTAACGCCAGAAATTCAAACGTACACAACAACACTCGAAATAATAATAATTATCTAAGTGAACCAATCCTAAAAGCAAGTTTATACTTTCTAAATTTGTTTTCGAGATTATAATTGAAGAATTCATAATTTTTAGCATTAGCCTTAGATCATCATAAACAAAGGTATGCTAGAAAGAACACACTCTCTTAGATGTTATTATTATTATAATTACCATATATAGTTGAGTTAGCTTTCAAGCTTAGTAGCCAAAAACGTACATGGCAATTTAGCATGGATGAAAGGAATTAAAAAAAAATTAAATATTACTAATTTGAGAGTGACTATGAGGGTAACAAGATTTAATGGAGAAGATGATAAACCCATTGATCAAGAATAGCAGGGGAACCATACCAGGGTCTCAATTCATCATCAGATCCAACAGGGGAATGATAGACTCCATCGAAGCTAATGTTGATAGCTCCCTCCAAATGAGC

mRNA sequence

ACCAAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAAAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAATCGAAAGCCGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAATACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCGCCATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGAACCTTTTTCAGAATTCGTAGTTTTTTCTAGTCCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGATAGAAGTTTTTCCTATTTCATATATACATAGATACATTTTGGAGAAGTAATGATCGTTGTGGACTTAAAAATTGATATTCGTTGAGGTAAATGCAATTTATTGGTAGGTTGAATGTGGTAATTGTAATTATTAATGTTAACTTAGCTCAATAATTTCATTTCTACAATCAGTTGAAAAGATGGTAAATGTAATTTAACGTTAACGTGTAAATGTAATTTATTACTTGAATACTTAAAATTTCAATTATGTGCAAGATCTTGAAGAAAATTATGTTTCTAAGTTGATATGCCAAGTAACGCCAGAAATTCAAACGTACACAACAACACTCGAAATAATAATAATTATCTAAGTGAACCAATCCTAAAAGCAAGTTTATACTTTCTAAATTTGTTTTCGAGATTATAATTGAAGAATTCATAATTTTTAGCATTAGCCTTAGATCATCATAAACAAAGGTATGCTAGAAAGAACACACTCTCTTAGATGTTATTATTATTATAATTACCATATATAGTTGAGTTAGCTTTCAAGCTTAGTAGCCAAAAACGTACATGGCAATTTAGCATGGATGAAAGGAATTAAAAAAAAATTAAATATTACTAATTTGAGAGTGACTATGAGGGTAACAAGATTTAATGGAGAAGATGATAAACCCATTGATCAAGAATAGCAGGGGAACCATACCAGGGTCTCAATTCATCATCAGATCCAACAGGGGAATGATAGACTCCATCGAAGCTAATGTTGATAGCTCCCTCCAAATGAGC

Coding sequence (CDS)

ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAATCGAAAGCCGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAA

Protein sequence

MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG

Homology

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BLAST of MELO3C022482.jh1.t1 vs. NCBI nr
Match: XP_008460088.1 (PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cucumis melo var. makuwa] >TYK24519.1 protein TRI1-like [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (708), Expect = 1.35e-93
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of MELO3C022482.jh1.t1 vs. NCBI nr
Match: XP_004154030.1 (upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262.1 hypothetical protein Csa_005564 [Cucumis sativus])

HSP 1 Score: 230 bits (586), Expect = 5.37e-75
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of MELO3C022482.jh1.t1 vs. NCBI nr
Match: XP_038906873.1 (upstream activation factor subunit spp27-like [Benincasa hispida])

HSP 1 Score: 201 bits (510), Expect = 1.96e-63
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASG  NGTRFFRGC+TL DSLK TTQAYSSTPAVS+K KLK  + AVSGQKS A PK+ 
Sbjct: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N S GI KS  VSP LAGFLG SE SR++A+KQIW+YIKLNNLQ+  DKRQINCD KLK
Sbjct: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GREKVG LEI K L+PHFVKS
Sbjct: 121 AIFDGREKVGFLEIGKLLTPHFVKS 144

[Close]

BLAST of MELO3C022482.jh1.t1 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (505), Expect = 1.21e-62
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K   AA S +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI+KS++VSP LAGFLG SE SRA+A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GRE VG LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKS 145

[Close]

BLAST of MELO3C022482.jh1.t1 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198 bits (503), Expect = 2.44e-62
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA S +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI+KS++VSP LAGFLG SE SR +A+KQIWSYIKLNNLQN  +KRQINCD KLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.8e-10
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 50  GQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 109
           G++     + Q  ++  + K +K+SP LA FLG  ++SR   +K++W YIK ++LQ+  D
Sbjct: 100 GEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPND 159

Query: 110 KRQINCDAKLKAIFGGREKVGMLEISKFLS 140
           KR I CD KLK++F   + + M  ++K+L+
Sbjct: 160 KRTILCDDKLKSVF-EVDTLHMFTMNKYLT 188

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 37  SKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIW 96
           S  K K  S + S +K K      +NS    ++ + +S  L  FLG  E+ R   +K IW
Sbjct: 92  STRKRKGKSESKSKRKKKKNDSPDSNSIS--VRKVLLSAPLQKFLGSEELPRTQVVKMIW 151

Query: 97  SYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPH 142
            YIK ++LQN  D+R+I CD K++ IFG  +K+ M  ++K L+ H
Sbjct: 152 QYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-08
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 10  RFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMK 69
           RF R  + LL   +  T A   T  ++   +        S  K     K++   S   + 
Sbjct: 63  RFERSLEDLLK--ENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPIS 122

Query: 70  SLKV--SPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGRE 129
           + KV  S +LA  LG+ E++R + ++++W+YIK +NLQN  +K++I CD KL+ I G  +
Sbjct: 123 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--K 182

Query: 130 KVGMLEISKFLSPHFVK 145
              M E+ K L+ H  +
Sbjct: 183 STNMFEMHKILASHMTE 195

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 277 bits (708), Expect = 6.55e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 277 bits (708), Expect = 6.55e-94
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
           TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEISKFLSPHFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 2.60e-75
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 6.82e-62
Identity = 104/145 (71.72%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA S +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIKLN+LQN  +KRQINCD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 1.95e-61
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60
           MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA + +KS+A  K++
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120
            N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIKLN+LQN  +KRQINCD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEISKFLSPHFVKS 145
           AIF GRE VG+LEI K LSPHFVKS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKS 145

[Close]

BLAST of MELO3C022482.jh1.t1 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 5.9e-26
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 12  FRGCKTLLDSLKPTTQAYSSTPAVSSKSK--LKPPSAAVSGQKSKA-APKRQTNSSGGIM 71
           FRG ++L   L P ++A SS  +  S  K   KP + A    K+K+ +P ++T  S GI 
Sbjct: 9   FRGARSL---LAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIF 68

Query: 72  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 131
           K   VSP LA FLG  E SR DAIK IW+YIK ++LQN  DKR+I CD  LK IF G++K
Sbjct: 69  KVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDK 128

Query: 132 VGMLEISKFLSPHFVKS 146
           VG LEISK LSPHFVK+
Sbjct: 129 VGFLEISKLLSPHFVKT 142

[Close]

BLAST of MELO3C022482.jh1.t1 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-22
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 52  KSKAAPKRQTNSSG-GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDK 111
           K+ ++   +T   G GI+K + VS  LA F+G++E+SR  A+K+IW YIKLNNLQN  +K
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 112 RQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           R+I CD +LK IF G++ VG LEISK LS HF KS
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of MELO3C022482.jh1.t1 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 53  SKAAPKRQTNSSG---GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTD 112
           SKAA       +G   GI K+  VS  LA F G+ E++R  A+K++W Y+KL+NLQN  +
Sbjct: 16  SKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPAN 75

Query: 113 KRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS 146
           K++I+CD KLK IF G++KVG+ EI K LSPHF KS
Sbjct: 76  KKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of MELO3C022482.jh1.t1 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 9   TRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIM 68
           T  FR   T L SL+     ++S PA    +KL+   A  S  +S            GIM
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPA----AKLRLVRAVTSATESSEPTATNKRVPRGIM 75

Query: 69  KSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREK 128
           K   VSP +   +   EI+R  A+K+IW+YIK ++LQ+  +KR+I CD KLK IF GR++
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 129 VGMLEISKFLSPHFV 144
           VG LEI+K + PHF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

[Close]

BLAST of MELO3C022482.jh1.t1 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.2e-15
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 22  LKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFL 81
           L P++   S     + +      SAA +        K  T    GIMK   VS  +   +
Sbjct: 25  LSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTK--TREPRGIMKPRPVSQAMQDVV 84

Query: 82  GQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPH 141
           G  EI R  A+K+IW+YIK ++LQ+  +KR I CD KLK IF G+E+VG LEI+K + PH
Sbjct: 85  GVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPH 144

Query: 142 FV 144
           F+
Sbjct: 145 FL 144

The following BLAST results are available for this feature:

BLAST of MELO3C022482.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460088.1	1.35e-93	100.00	PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cuc...	[more]
XP_004154030.1	5.37e-75	82.88	upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262....	[more]
XP_038906873.1	1.96e-63	74.48	upstream activation factor subunit spp27-like [Benincasa hispida]	[more]
KAG6593744.1	1.21e-62	72.41	hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6593745.1	2.44e-62	72.41	hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	5.8e-10	36.67	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	3.8e-09	37.14	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	4.2e-08	30.66	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of MELO3C022482.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMJ2	6.55e-94	100.00	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	6.55e-94	100.00	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A0A0KCY9	2.60e-75	82.88	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]
A0A6J1KHF5	6.82e-62	71.72	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	1.95e-61	71.03	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of MELO3C022482.jh1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	5.9e-26	51.82	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	6.8e-22	53.68	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	4.4e-21	51.04	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.7e-17	40.74	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	6.2e-15	39.34	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..146 e-value: 2.2E-28 score: 110.3
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 70..142 e-value: 9.7E-30 score: 102.3
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 66..144 score: 21.914476
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 60..146 e-value: 9.5E-28 score: 98.0
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 64..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..68
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..145
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 7..145
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 71..142 e-value: 3.73718E-35 score: 114.948

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022482.jh1	MELO3C022482.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022482.jh1.t1.exon	MELO3C022482.jh1.t1.exon	exon
MELO3C022482.jh1.t1.exon	MELO3C022482.jh1.t1.exon_2	exon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022482.jh1.t1.stop_codon	MELO3C022482.jh1.t1.stop_codon	stop_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022482.jh1.t1.cds	MELO3C022482.jh1.t1.cds	CDS
MELO3C022482.jh1.t1.cds	MELO3C022482.jh1.t1.cds_2	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022482.jh1.t1.start_codon	MELO3C022482.jh1.t1.start_codon	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C022482.jh1.t1	MELO3C022482.jh1.t1-protein	polypeptide