MELO3C020633.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C020633.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RING-H2 finger protein ATL39-like
Location	chr12: 1727717 .. 1728205 (+)
Sequence length	489
RNA-Seq Expression	MELO3C020633.1
Synteny	MELO3C020633.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCACCGCCTCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACAGCTGCCATCGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

mRNA sequence

ATGCCTTCACCGCCTCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACAGCTGCCATCGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Coding sequence (CDS)

ATGCCTTCACCGCCTCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACAGCTGCCATCGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Protein sequence

MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS

Homology

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BLAST of MELO3C020633.1 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 4   PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIF--TCYERKFWNRNGDIEGGQLP 63
           PPPPP   P   LS L    + V G   L +  ++F++     +R+              
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI----------SAA 85

Query: 64  SVTMDESPASETGDSSRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 123
           SVT  ++   E  D +  R  S                A+ S  +  +  G G+I    +
Sbjct: 86  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 145

Query: 124 CSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 153
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 146 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of MELO3C020633.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 4   PPPPP----DDLPVGFLSALDLDFLNVAGL--SALAMMFIYFIFTCYERKFWNRNGDIEG 63
           PPPPP    DD      S+     + + G+  SAL ++  Y + +    K+ +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 64  GQLPSVTMDESPASETGDSSRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 123
               S T++ +   E   SS +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  ----SETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 124 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 151
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of MELO3C020633.1 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 93  QYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 152
           +Y  G G +    DCS+CL EF++GE  R+LP+C H FH+ CID WL +  NCP+CR+ +
Sbjct: 144 KYRRGDGFV-HTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI 202

[Close]

BLAST of MELO3C020633.1 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-13
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 106 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYV 155
           DCSICL EF E E  R+LPKC H FH  CID+WL +  NCP+CR+ + V
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of MELO3C020633.1 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-13
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 2   PSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLP 61
           P+PPP P        SALD        +  +A+ F+ F F+ Y R F + +         
Sbjct: 36  PTPPPQPP-------SALDSTMALTIFILLVALFFMGF-FSVYFRHFADSSSS------- 95

Query: 62  SVTMDESPASETGDSSRRRPSSRAVISTRL-FQYGVGGGVI-------------GKNADC 121
           +V +   P + +   S RR S+  V+S    F+ G+    +              +N DC
Sbjct: 96  TVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDC 155

Query: 122 SICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 151
            ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 156 VICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of MELO3C020633.1 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 2.5e-91
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL
Sbjct: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. NCBI nr
Match: KAA0067737.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 3.6e-90
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGG+L
Sbjct: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGRL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           PS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. NCBI nr
Match: KAE8653247.1 (hypothetical protein Csa_019633 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 9.4e-83
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+WNRNGDIEGG+L
Sbjct: 145 MPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRL 204

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           P+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 205 PTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 264

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 265 RMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 306

[Close]

BLAST of MELO3C020633.1 vs. NCBI nr
Match: XP_004151031.2 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 9.4e-83
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+WNRNGDIEGG+L
Sbjct: 12  MPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           P+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. NCBI nr
Match: XP_038895799.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 263.8 bits (673), Expect = 9.4e-67
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MP PPP P +L V  LS LDLDFLN AGLSALA+M +YFIFTCYERK+WNRNGDIEGG+ 
Sbjct: 1   MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRP 60

Query: 61  PSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEI 120
           PS  T+ E  ASE GDSS RR +S AVIST+LFQYG  GG++GKNADCSICLDEF+EGEI
Sbjct: 61  PSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYG-EGGLMGKNADCSICLDEFSEGEI 120

Query: 121 CRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           CRMLPKCKHVFHRFCIDQWLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 121 CRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 162

[Close]

BLAST of MELO3C020633.1 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL
Sbjct: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL
Sbjct: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.7e-90
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGG+L
Sbjct: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGRL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           PS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.6e-83
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60
           MP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+WNRNGDIEGG+L
Sbjct: 12  MPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRL 71

Query: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120
           P+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 72  PTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131

Query: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           RMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 132 RMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.1 vs. ExPASy TrEMBL
Match: A0A6J1I603 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.9e-50
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 5   PPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSVT 64
           PPPP +L V  LS +DLDFLN AGL  LA+  +YFI+T YE K+WNR+ DIEGG+     
Sbjct: 3   PPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62

Query: 65  MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 124
              +  +  G S   R  + AVISTRLFQYG   G+ GKNADCSICLDEF EGEICRMLP
Sbjct: 63  --SAATASVGSSGEDRRWATAVISTRLFQYG-ERGMEGKNADCSICLDEFVEGEICRMLP 122

Query: 125 KCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 163
           KCKHVFHRFCIDQWLPNER+CP+CRSPV+VR +++  S
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of MELO3C020633.1 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-17
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 86  VISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNC 145
           + S ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID WL +  NC
Sbjct: 197 ISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNC 256

Query: 146 PVCRSPV 153
           P+CR+P+
Sbjct: 257 PLCRAPI 262

[Close]

BLAST of MELO3C020633.1 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-17
Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 4   PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIF--TCYERKFWNRNGDIEGGQLP 63
           PPPPP   P   LS L    + V G   L +  ++F++     +R+              
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI----------SAA 85

Query: 64  SVTMDESPASETGDSSRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 123
           SVT  ++   E  D +  R  S                A+ S  +  +  G G+I    +
Sbjct: 86  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 145

Query: 124 CSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 153
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 146 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of MELO3C020633.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-15
Identity = 53/160 (33.12%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 4   PPPPP----DDLPVGFLSALDLDFLNVAGL--SALAMMFIYFIFTCYERKFWNRNGDIEG 63
           PPPPP    DD      S+     + + G+  SAL ++  Y + +    K+ +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 64  GQLPSVTMDESPASETGDSSRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 123
               S T++ +   E   SS +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  ----SETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 124 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 151
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of MELO3C020633.1 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 2   PSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLP 61
           P+PPP P        SALD        +  +A+ F+ F F+ Y R F + +         
Sbjct: 36  PTPPPQPP-------SALDSTMALTIFILLVALFFMGF-FSVYFRHFADSSSS------- 95

Query: 62  SVTMDESPASETGDSSRRRPSSRAVISTRL-FQYGVGGGVI-------------GKNADC 121
           +V +   P + +   S RR S+  V+S    F+ G+    +              +N DC
Sbjct: 96  TVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDC 155

Query: 122 SICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 151
            ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 156 VICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of MELO3C020633.1 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 106 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYV 155
           DCSICL EF E E  R+LPKC H FH  CID+WL +  NCP+CR+ + V
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

The following BLAST results are available for this feature:

BLAST of MELO3C020633.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	1.0e-15	32.53	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LF64	1.3e-13	33.13	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	2.8e-13	48.33	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P0C041	3.7e-13	59.18	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9SJJ7	3.7e-13	31.29	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]

BLAST of MELO3C020633.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457570.2	2.5e-91	100.00	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 ...	[more]
KAA0067737.1	3.6e-90	98.77	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
KAE8653247.1	9.4e-83	90.12	hypothetical protein Csa_019633 [Cucumis sativus]	[more]
XP_004151031.2	9.4e-83	90.12	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
XP_038895799.1	9.4e-67	77.91	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]

BLAST of MELO3C020633.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEF0	1.2e-91	100.00	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C5T1	1.2e-91	100.00	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
A0A5A7VKM2	1.7e-90	98.77	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0M0H1	4.6e-83	90.12	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A6J1I603	3.9e-50	63.29	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 P...	[more]

BLAST of MELO3C020633.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	1.5e-17	50.75	RING/U-box superfamily protein	[more]
AT5G10380.1	7.3e-17	32.53	RING/U-box superfamily protein	[more]
AT5G17600.1	8.9e-15	33.13	RING/U-box superfamily protein	[more]
AT2G27940.1	2.6e-14	31.29	RING/U-box superfamily protein	[more]
AT4G17905.1	2.6e-14	59.18	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 1.0E-7 score: 41.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 4.0E-13 score: 49.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..153 e-value: 2.1E-20 score: 74.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 29..153
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 107..149 e-value: 3.17097E-16 score: 66.4813
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..155
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 29..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020633	MELO3C020633	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C020633.1:exon:340842	MELO3C020633.1:exon:340842	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C020633.1:cds	MELO3C020633.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C020633.1	MELO3C020633.1-protein	polypeptide