MELO3C017180.1 (mRNA) Melon (DHL92) v4

Overview
NameMELO3C017180.1
TypemRNA
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionChlorophyll a-b binding protein, chloroplastic
Locationchr02: 25348203 .. 25349722 (+)
Sequence length1415
RNA-Seq ExpressionMELO3C017180.1
SyntenyMELO3C017180.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACATTGAAGTGAAGTTACAAAGCCTTGCAAATTAGTTCTCAATTTCTTACTCCTGAAAACCCATTTTCTTCCTCAATCCAAAAAGATCATTCAGGAGAAATGGCCACCGTCACCACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGTGCCGCCCGATCAAGATTCCTTTCCGGTTCTTCCGGTAAACTCCACCGTGTGCTCTCGGTTAAGCCAGTTTCTGCTTCTTCGTCTTCATCTTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCTGGTCTCCCATCTCCGGCGTACTTAAACGGCAGGTAATTTTCACCTTCCTAATTTGCTTTGTAAATTTGTAAAATTGGGTTTTCTCTAATCCAATTCTTTAATCGAAATACAGTCTTCCCGGTGACAATGGATTTGACCCATTGGGATTAGCGGAAGACCCAGAGAATTTGAGGTGGTTTGTTCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTGGGTGTCGCAGGAATGCTTCTACCGGAAGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTTAAGCAATACAGTTTGCCACCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCTCCAACTCTCGAAGCTAAAGAGAAGGAACTAGCCAATGGTAAGCGTCATTGAATATGGTTGACTCTTAATGACCGTCGTGAACTCGAGATACTTTCACAGTTTCTTATTTGTGAATTGATGTGTGTTTTGTTGTTTGGTATAGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGCAAAGGGCCATTTGACAATCTTTTGCAACACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAAGTTTGGTTTGTTTGGAAGGTTGTTGTTGTTGTTGTATTAAGAGTAAAAATGGTTGATATGAACTGAGATACTTTCGAGAGTATGTTTTTGGAGTGTGGTGTTGCTAATGGAATTTGTAATATGCAACAACATAGTGGAATATCAGTGTACAGAAGGTGGAGGGGCTTGTCATTGTAGCTTGGATGTTGTTCTTTAAATGACATGAATTTGGCTCTTGCAGCTTCCTTCAACTTTCACATCTTTAATCATGTTGAAACTTAAACCACTAACTTGGGAATTCTACACTCAAGCTTAGTGTTATGATTAGTTATATGTTTTGAATGCGTCGATAGGAAATCTTTATCAGATTTCTAGACCATTTGAACTAAGATATCGACTAGTTAAGACATTGTAATTTAAAAGAAAAGAAAGTAAGAAGTTGAATATCCCTTAACAAATGAAGTAATACATATTTGGCAAAGAAAATTTGGAAGTTT

mRNA sequence

AACATTGAAGTGAAGTTACAAAGCCTTGCAAATTAGTTCTCAATTTCTTACTCCTGAAAACCCATTTTCTTCCTCAATCCAAAAAGATCATTCAGGAGAAATGGCCACCGTCACCACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGTGCCGCCCGATCAAGATTCCTTTCCGGTTCTTCCGGTAAACTCCACCGTGTGCTCTCGGTTAAGCCAGTTTCTGCTTCTTCGTCTTCATCTTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCTGGTCTCCCATCTCCGGCGTACTTAAACGGCAGGTAATTTTCACCTTCCTAATTTGCTTTGTAAATTTGTAAAATTGGGTTTTCTCTAATCCAATTCTTTAATCGAAATACAGTCTTCCCGGTGACAATGGATTTGACCCATTGGGATTAGCGGAAGACCCAGAGAATTTGAGGTGGTTTGTTCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTGGGTGTCGCAGGAATGCTTCTACCGGAAGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTTAAGCAATACAGTTTGCCACCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCTCCAACTCTCGAAGCTAAAGAGAAGGAACTAGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGCAAAGGGCCATTTGACAATCTTTTGCAACACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAAGTTTGGTTTGTTTGGAAGGTTGTTGTTGTTGTTGTATTAAGAGTAAAAATGGTTGATATGAACTGAGATACTTTCGAGAGTATGTTTTTGGAGTGTGGTGTTGCTAATGGAATTTGTAATATGCAACAACATAGTGGAATATCAGTGTACAGAAGGTGGAGGGGCTTGTCATTGTAGCTTGGATGTTGTTCTTTAAATGACATGAATTTGGCTCTTGCAGCTTCCTTCAACTTTCACATCTTTAATCATGTTGAAACTTAAACCACTAACTTGGGAATTCTACACTCAAGCTTAGTGTTATGATTAGTTATATGTTTTGAATGCGTCGATAGGAAATCTTTATCAGATTTCTAGACCATTTGAACTAAGATATCGACTAGTTAAGACATTGTAATTTAAAAGAAAAGAAAGTAAGAAGTTGAATATCCCTTAACAAATGAAGTAATACATATTTGGCAAAGAAAATTTGGAAGTTT

Coding sequence (CDS)

ATGCTGGGTGTCGCAGGAATGCTTCTACCGGAAGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTTAAGCAATACAGTTTGCCACCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCTCCAACTCTCGAAGCTAAAGAGAAGGAACTAGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGCAAAGGGCCATTTGACAATCTTTTGCAACACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA

Protein sequence

MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Homology
BLAST of MELO3C017180.1 vs. NCBI nr
Match: XP_008453211.1 (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA0057949.1 chlorophyll a-b binding protein P4 [Cucumis melo var. makuwa])

HSP 1 Score: 324.7 bits (831), Expect = 4.2e-85
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252

BLAST of MELO3C017180.1 vs. NCBI nr
Match: XP_004138171.1 (chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN63677.1 hypothetical protein Csa_013519 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 7.1e-85
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFIVQH
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252

BLAST of MELO3C017180.1 vs. NCBI nr
Match: XP_038880569.1 (chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida])

HSP 1 Score: 323.9 bits (829), Expect = 7.1e-85
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFIVQH
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252

BLAST of MELO3C017180.1 vs. NCBI nr
Match: ABK96327.1 (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 320.9 bits (821), Expect = 6.0e-84
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 161

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT+EAKEKELANGRLAMLAFLGF++QH
Sbjct: 162 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEAKEKELANGRLAMLAFLGFVIQH 221

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTF GN
Sbjct: 222 NVTGKGPFDNLLQHISDPWHNTIVQTFSGN 251

BLAST of MELO3C017180.1 vs. NCBI nr
Match: KAG6746949.1 (hypothetical protein POTOM_049325 [Populus tomentosa])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 161

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGF++QH
Sbjct: 162 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVIQH 221

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPF+NLLQHISDPWHNTIVQTF GN
Sbjct: 222 NVTGKGPFENLLQHISDPWHNTIVQTFSGN 251

BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 4.6e-79
Identity = 137/150 (91.33%), Postives = 140/150 (93.33%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFT IGIIN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PG VNQDPIFKQYSLP  E GYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFI+QH
Sbjct: 163 PGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQT GGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252

BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-78
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 104 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKN 163

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PG VNQDPIFKQYSLP  E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQH
Sbjct: 164 PGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQH 223

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTF 148
           NVTGKGPF+NLLQH+SDPWHNTIVQTF
Sbjct: 224 NVTGKGPFENLLQHLSDPWHNTIVQTF 250

BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-61
Identity = 112/150 (74.67%), Postives = 125/150 (83.33%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYD-AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 60
           MLGVAGML+PEV TK G++NAP+W    GK  YFASSST   +  +   YVEIRRWQDIK
Sbjct: 83  MLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIK 142

Query: 61  NPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQ 120
           NPG VNQDPIFK YSLPP+ECGYPG +FNPLNFAP LE KEKELANGRLAMLAFLGF+VQ
Sbjct: 143 NPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-LENKEKELANGRLAMLAFLGFLVQ 202

Query: 121 HNVTGKGPFDNLLQHISDPWHNTIVQTFGG 150
           HNV GKGPF+NL QH++DPWHNTI+QT  G
Sbjct: 203 HNVHGKGPFENLQQHLADPWHNTIIQTISG 230

BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.8e-41
Identity = 79/153 (51.63%), Postives = 99/153 (64.71%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLG AG+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  
Sbjct: 115 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIK 174

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGI-FNPLNF-----APTLEAKEKELANGRLAMLAFL 120
           PGCVN DPIF    L   + GYPGG+ F+PL +     A   E + KE+ NGRLAMLA +
Sbjct: 175 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234

Query: 121 GFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 148
           G   QH  TG GP DNL  H++DP H TI   F
Sbjct: 235 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267

BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 80/153 (52.29%), Postives = 98/153 (64.05%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLG AG+ +PE  TKIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  
Sbjct: 115 MLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIK 174

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGI-FNPLNF-----APTLEAKEKELANGRLAMLAFL 120
           PGCVN DPIF    L   + GYPGG+ F+PL +     A   E + KE+ NGRLAMLA +
Sbjct: 175 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVM 234

Query: 121 GFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 148
           G   QH  TG GP DNL  H++DP H TI   F
Sbjct: 235 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267

BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A5A7UWR2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002520 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.0e-85
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252

BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A1S3BV45 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493999 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.0e-85
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252

BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A0A0LSB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G009810 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.4e-85
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 162

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKE+ANGRLAMLAFLGFIVQH
Sbjct: 163 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQH 222

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTFGGN
Sbjct: 223 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252

BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A9PIX4 (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 2.9e-84
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 161

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPT+EAKEKELANGRLAMLAFLGF++QH
Sbjct: 162 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTIEAKEKELANGRLAMLAFLGFVIQH 221

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPFDNLLQHISDPWHNTIVQTF GN
Sbjct: 222 NVTGKGPFDNLLQHISDPWHNTIVQTFSGN 251

BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A6M2ECG7 (Chlorophyll a-b binding protein, chloroplastic OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.0e-84
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 161

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGF++QH
Sbjct: 162 PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVIQH 221

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTFGGN 151
           NVTGKGPF+NLLQHISDPWHNTIVQTF GN
Sbjct: 222 NVTGKGPFENLLQHISDPWHNTIVQTFSGN 251

BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 293.9 bits (751), Expect = 7.4e-80
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLGVAGMLLPEVFTKIGIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKN
Sbjct: 104 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKN 163

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQH 120
           PG VNQDPIFKQYSLP  E GYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQH
Sbjct: 164 PGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQH 223

Query: 121 NVTGKGPFDNLLQHISDPWHNTIVQTF 148
           NVTGKGPF+NLLQH+SDPWHNTIVQTF
Sbjct: 224 NVTGKGPFENLLQHLSDPWHNTIVQTF 250

BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 164.5 bits (415), Expect = 6.7e-41
Identity = 79/153 (51.63%), Postives = 96/153 (62.75%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           MLG AG+ +PE  TKIGI+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGI-FNPLNF-----APTLEAKEKELANGRLAMLAFL 120
           PG VN DP+F    L   + GYPGG+ F+PL +     A   E + KE+ NGRLAMLA +
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221

Query: 121 GFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 148
           G   QH  TG GP DNL  H++DP H TI   F
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254

BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33
Identity = 71/155 (45.81%), Postives = 100/155 (64.52%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 60
           MLGVAG+L  ++    GI N P WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  
Sbjct: 96  MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFV 155

Query: 61  NPGCVNQDPIF---KQYSLPPNECGYPGG-IFNPLNFAPTLEA----KEKELANGRLAML 120
           +PG   ++  F    + +L   E GYPGG + NPL  A  ++     K KE+ NGRLAM+
Sbjct: 156 SPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMM 215

Query: 121 AFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQT 147
           A LGF VQ +VT  GP DNL++H+S+PWH TI+QT
Sbjct: 216 AMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33
Identity = 71/155 (45.81%), Postives = 100/155 (64.52%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 60
           MLGVAG+L  ++    GI N P WY+AG  ++ FAS+ TL V++F+L  + E +R+ D  
Sbjct: 96  MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFV 155

Query: 61  NPGCVNQDPIF---KQYSLPPNECGYPGG-IFNPLNFAPTLEA----KEKELANGRLAML 120
           +PG   ++  F    + +L   E GYPGG + NPL  A  ++     K KE+ NGRLAM+
Sbjct: 156 SPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMM 215

Query: 121 AFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQT 147
           A LGF VQ +VT  GP DNL++H+S+PWH TI+QT
Sbjct: 216 AMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQT 250

BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 0

Query: 1   MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
           ML V G+++PE   ++G I    WYDAG  EYFA S+TLFV + +L  + E RRW D+  
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIK 174

Query: 61  PGCVNQDPIFKQYSLPPNECGYPGGIFNPLNF------APTLEAKEKELANGRLAMLAFL 120
           PG V+ +P +     P  + GYPGG++            P +  + KE+ NGRLAMLAFL
Sbjct: 175 PGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFL 234

Query: 121 GFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 148
           GF  Q   T + P +NL+ H++DP H  +   F
Sbjct: 235 GFCFQATYTSQDPIENLMAHLADPGHCNVFSAF 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008453211.14.2e-85100.00PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA... [more]
XP_004138171.17.1e-8599.33chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN63677.1 ... [more]
XP_038880569.17.1e-8599.33chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida][more]
ABK96327.16.0e-8497.33unknown [Populus trichocarpa x Populus deltoides][more]
KAG6746949.11.0e-8397.33hypothetical protein POTOM_049325 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
Q9SQL24.6e-7991.33Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh... [more]
P275211.0e-7891.84Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q367182.0e-6174.67Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga... [more]
P107083.8e-4151.63Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081... [more]
P138695.0e-4152.29Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S... [more]
Match NameE-valueIdentityDescription
A0A5A7UWR22.0e-85100.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3BV452.0e-85100.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0LSB43.4e-8599.33Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa... [more]
A9PIX42.9e-8497.33Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa x Populus ... [more]
A0A6M2ECG75.0e-8497.33Chlorophyll a-b binding protein, chloroplastic OS=Populus davidiana OX=266767 PE... [more]
Match NameE-valueIdentityDescription
AT3G47470.17.4e-8091.84light-harvesting chlorophyll-protein complex I subunit A4 [more]
AT3G61470.16.7e-4151.63photosystem I light harvesting complex gene 2 [more]
AT1G45474.11.4e-3345.81photosystem I light harvesting complex gene 5 [more]
AT1G45474.21.4e-3345.81photosystem I light harvesting complex gene 5 [more]
AT1G19150.12.0e-3241.18photosystem I light harvesting complex gene 6 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 1..120
e-value: 2.3E-26
score: 93.3
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 1..140
e-value: 8.9E-44
score: 151.7
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..150
NoneNo IPR availablePANTHERPTHR21649:SF109CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 1..150
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 1..147

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C017180MELO3C017180gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017180.1:exon:62867MELO3C017180.1:exon:62867exon
MELO3C017180.1:exon:62868MELO3C017180.1:exon:62868exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017180.1:five_prime_utrMELO3C017180.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017180.1:cdsMELO3C017180.1:cdsCDS
MELO3C017180.1:cdsMELO3C017180.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C017180.1:three_prime_utrMELO3C017180.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C017180.1MELO3C017180.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
cellular_component GO:0016020 membrane