MELO3C017180.1 (mRNA) Melon (DHL92) v4
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACATTGAAGTGAAGTTACAAAGCCTTGCAAATTAGTTCTCAATTTCTTACTCCTGAAAACCCATTTTCTTCCTCAATCCAAAAAGATCATTCAGGAGAAATGGCCACCGTCACCACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGTGCCGCCCGATCAAGATTCCTTTCCGGTTCTTCCGGTAAACTCCACCGTGTGCTCTCGGTTAAGCCAGTTTCTGCTTCTTCGTCTTCATCTTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCTGGTCTCCCATCTCCGGCGTACTTAAACGGCAGGTAATTTTCACCTTCCTAATTTGCTTTGTAAATTTGTAAAATTGGGTTTTCTCTAATCCAATTCTTTAATCGAAATACAGTCTTCCCGGTGACAATGGATTTGACCCATTGGGATTAGCGGAAGACCCAGAGAATTTGAGGTGGTTTGTTCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTGGGTGTCGCAGGAATGCTTCTACCGGAAGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTTAAGCAATACAGTTTGCCACCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCTCCAACTCTCGAAGCTAAAGAGAAGGAACTAGCCAATGGTAAGCGTCATTGAATATGGTTGACTCTTAATGACCGTCGTGAACTCGAGATACTTTCACAGTTTCTTATTTGTGAATTGATGTGTGTTTTGTTGTTTGGTATAGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGCAAAGGGCCATTTGACAATCTTTTGCAACACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAAGTTTGGTTTGTTTGGAAGGTTGTTGTTGTTGTTGTATTAAGAGTAAAAATGGTTGATATGAACTGAGATACTTTCGAGAGTATGTTTTTGGAGTGTGGTGTTGCTAATGGAATTTGTAATATGCAACAACATAGTGGAATATCAGTGTACAGAAGGTGGAGGGGCTTGTCATTGTAGCTTGGATGTTGTTCTTTAAATGACATGAATTTGGCTCTTGCAGCTTCCTTCAACTTTCACATCTTTAATCATGTTGAAACTTAAACCACTAACTTGGGAATTCTACACTCAAGCTTAGTGTTATGATTAGTTATATGTTTTGAATGCGTCGATAGGAAATCTTTATCAGATTTCTAGACCATTTGAACTAAGATATCGACTAGTTAAGACATTGTAATTTAAAAGAAAAGAAAGTAAGAAGTTGAATATCCCTTAACAAATGAAGTAATACATATTTGGCAAAGAAAATTTGGAAGTTT AACATTGAAGTGAAGTTACAAAGCCTTGCAAATTAGTTCTCAATTTCTTACTCCTGAAAACCCATTTTCTTCCTCAATCCAAAAAGATCATTCAGGAGAAATGGCCACCGTCACCACTCAAGCTTCTGCCGCCGTTTTCCGGCCATGTGCCGCCCGATCAAGATTCCTTTCCGGTTCTTCCGGTAAACTCCACCGTGTGCTCTCGGTTAAGCCAGTTTCTGCTTCTTCGTCTTCATCTTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCTGGTCTCCCATCTCCGGCGTACTTAAACGGCAGGTAATTTTCACCTTCCTAATTTGCTTTGTAAATTTGTAAAATTGGGTTTTCTCTAATCCAATTCTTTAATCGAAATACAGTCTTCCCGGTGACAATGGATTTGACCCATTGGGATTAGCGGAAGACCCAGAGAATTTGAGGTGGTTTGTTCAAGCGGAGCTGGTGAATGGGCGGTGGGCGATGCTGGGTGTCGCAGGAATGCTTCTACCGGAAGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTTAAGCAATACAGTTTGCCACCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCTCCAACTCTCGAAGCTAAAGAGAAGGAACTAGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGCAAAGGGCCATTTGACAATCTTTTGCAACACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAAGTTTGGTTTGTTTGGAAGGTTGTTGTTGTTGTTGTATTAAGAGTAAAAATGGTTGATATGAACTGAGATACTTTCGAGAGTATGTTTTTGGAGTGTGGTGTTGCTAATGGAATTTGTAATATGCAACAACATAGTGGAATATCAGTGTACAGAAGGTGGAGGGGCTTGTCATTGTAGCTTGGATGTTGTTCTTTAAATGACATGAATTTGGCTCTTGCAGCTTCCTTCAACTTTCACATCTTTAATCATGTTGAAACTTAAACCACTAACTTGGGAATTCTACACTCAAGCTTAGTGTTATGATTAGTTATATGTTTTGAATGCGTCGATAGGAAATCTTTATCAGATTTCTAGACCATTTGAACTAAGATATCGACTAGTTAAGACATTGTAATTTAAAAGAAAAGAAAGTAAGAAGTTGAATATCCCTTAACAAATGAAGTAATACATATTTGGCAAAGAAAATTTGGAAGTTT ATGCTGGGTGTCGCAGGAATGCTTCTACCGGAAGTTTTCACGAAGATTGGAATCATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTAATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGAAGATGGCAAGACATTAAAAACCCTGGCTGTGTTAACCAAGACCCCATTTTTAAGCAATACAGTTTGCCACCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTCGCTCCAACTCTCGAAGCTAAAGAGAAGGAACTAGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATAGTGCAACACAATGTGACAGGCAAAGGGCCATTTGACAATCTTTTGCAACACATCTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN Homology
BLAST of MELO3C017180.1 vs. NCBI nr
Match: XP_008453211.1 (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo] >KAA0057949.1 chlorophyll a-b binding protein P4 [Cucumis melo var. makuwa]) HSP 1 Score: 324.7 bits (831), Expect = 4.2e-85 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MELO3C017180.1 vs. NCBI nr
Match: XP_004138171.1 (chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus] >KGN63677.1 hypothetical protein Csa_013519 [Cucumis sativus]) HSP 1 Score: 323.9 bits (829), Expect = 7.1e-85 Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MELO3C017180.1 vs. NCBI nr
Match: XP_038880569.1 (chlorophyll a-b binding protein P4, chloroplastic [Benincasa hispida]) HSP 1 Score: 323.9 bits (829), Expect = 7.1e-85 Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MELO3C017180.1 vs. NCBI nr
Match: ABK96327.1 (unknown [Populus trichocarpa x Populus deltoides]) HSP 1 Score: 320.9 bits (821), Expect = 6.0e-84 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of MELO3C017180.1 vs. NCBI nr
Match: KAG6746949.1 (hypothetical protein POTOM_049325 [Populus tomentosa]) HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 4.6e-79 Identity = 137/150 (91.33%), Postives = 140/150 (93.33%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 1.0e-78 Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.0e-61 Identity = 112/150 (74.67%), Postives = 125/150 (83.33%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 3.8e-41 Identity = 79/153 (51.63%), Postives = 99/153 (64.71%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41 Identity = 80/153 (52.29%), Postives = 98/153 (64.05%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A5A7UWR2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002520 PE=3 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 2.0e-85 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A1S3BV45 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493999 PE=3 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 2.0e-85 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A0A0LSB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G009810 PE=3 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 3.4e-85 Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A9PIX4 (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 2.9e-84 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of MELO3C017180.1 vs. ExPASy TrEMBL
Match: A0A6M2ECG7 (Chlorophyll a-b binding protein, chloroplastic OS=Populus davidiana OX=266767 PE=3 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 5.0e-84 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 ) HSP 1 Score: 293.9 bits (751), Expect = 7.4e-80 Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0
BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 ) HSP 1 Score: 164.5 bits (415), Expect = 6.7e-41 Identity = 79/153 (51.63%), Postives = 96/153 (62.75%), Query Frame = 0
BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 ) HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33 Identity = 71/155 (45.81%), Postives = 100/155 (64.52%), Query Frame = 0
BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 ) HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33 Identity = 71/155 (45.81%), Postives = 100/155 (64.52%), Query Frame = 0
BLAST of MELO3C017180.1 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 ) HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32 Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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